mRNA_L-elsbetiae_contig8884.17906.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8884.17906.1
Unique NamemRNA_L-elsbetiae_contig8884.17906.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8884.17906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8884contigL-elsbetiae_contig8884:2939..4028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.3767776-CDS-L-elsbetiae_contig8884:2938..30971622816965.3767776-CDS-L-elsbetiae_contig8884:2938..3097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8884 2939..3097 +
1691683946.884402-CDS-L-elsbetiae_contig8884:2938..30971691683946.884402-CDS-L-elsbetiae_contig8884:2938..3097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8884 2939..3097 +
1622816965.387156-CDS-L-elsbetiae_contig8884:3899..40281622816965.387156-CDS-L-elsbetiae_contig8884:3899..4028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8884 3900..4028 +
1691683946.8938777-CDS-L-elsbetiae_contig8884:3899..40281691683946.8938777-CDS-L-elsbetiae_contig8884:3899..4028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8884 3900..4028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8884.17906.1prot_L-elsbetiae_contig8884.17906.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8884 2939..4028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8884.17906.1

>prot_L-elsbetiae_contig8884.17906.1 ID=prot_L-elsbetiae_contig8884.17906.1|Name=mRNA_L-elsbetiae_contig8884.17906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
RRKTEATPLCQRRSRRGKGGGSSGNNDRGRGGRHTTVHGLGGRAKRETEW
QIKLRLLLKGVFFSSVSGATTLPAKAPLQNAWTDVVALFMICKHA*
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mRNA from alignment at L-elsbetiae_contig8884:2939..4028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8884.17906.1 ID=mRNA_L-elsbetiae_contig8884.17906.1|Name=mRNA_L-elsbetiae_contig8884.17906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1090bp|location=Sequence derived from alignment at L-elsbetiae_contig8884:2939..4028+ (Laminarionema elsbetiae ELsaHSoW15)
AGACGGAAAACAGAAGCGACCCCGCTTTGTCAAAGAAGAAGCCGTAGAGG
AAAGGGTGGGGGCAGCAGCGGTAACAACGACCGTGGCCGAGGTGGGCGCC
ACACAACCGTTCATGGGCTTGGGGGAAGGGCGAAGAGGGAGACAGAGTGG
CAAATAAAGGTGGGCTTTCCCCGGCCAGCACCCTATCTATTAAGTTGCGA
ACGAGGGCGCACTCGTGTTATGTGTACATACGTGTAAATGGGATGTATTT
GAGGCCATGGAAATCGTGTACGTGCGGCCACGGACGTGAGAGAAAGACGC
TGGTTCCAGCGTGAGGTCGCGATAGTAAGTGGCGGCAAACACAAACGCCA
GAATTCCCCATCCCGCCCCTGCTCATACTGTAGCCATATACTCCGAAACA
TTTTTCGGAGTATTTAGCGACTTCCGGAAAGAATGTGGGTTATTTTTGGC
CCGTGTTCATGTGTGTGTGCAGACATACAGAGGGCGGCCACATCGGTCCA
AGCACTCTGGATGGGTGTCCTGGATAAAAGGGTAGCATTGGCTGCCGCCC
AGAGGAAGATATTACCTCTCAACAGCAAGCGGAGCTCTAGAGCAGGCGAT
ACAGCAGTCCAGGCTGTTCGGGATATGTCCTGTGTTGAGCTTCATAGACC
GAGGATGTTGTTAACCACATGTATTAGGGTGTCGTCGAGACATGAGGAGA
GAGATAACGAGAAGGAGTGAGACCAAAACATCTGGAACGGGGTCCCGCAA
CTCATATCCAGAAGGCTCTCATACCATGTCATTTCCATCTACGGGACAAG
AAACCGTCCGCACATCTGTCAACCACCTAATCCACTTCTACACACGAACA
CAGGCAATGACAATGTGCCACGTATCAGGATACGTTTGTTTCTGTATTCC
AACTGTCTTCACCAGCCCTTGTGTTCCTCCCTCTCGTTACTATTGTGGCT
CCCTCTAACAGCTGCGCTTGTTGCTCAAAGGTGTCTTCTTCTCCTCGGTG
TCGGGAGCCACTACCCTCCCAGCCAAGGCACCCCTCCAGAACGCCTGGAC
CGACGTGGTCGCCCTCTTCATGATCTGCAAACACGCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8884:2939..4028+

>mRNA_L-elsbetiae_contig8884.17906.1 ID=mRNA_L-elsbetiae_contig8884.17906.1|Name=mRNA_L-elsbetiae_contig8884.17906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig8884:2939..4028+ (Laminarionema elsbetiae ELsaHSoW15)
AGACGGAAAACAGAAGCGACCCCGCTTTGTCAAAGAAGAAGCCGTAGAGG
AAAGGGTGGGGGCAGCAGCGGTAACAACGACCGTGGCCGAGGTGGGCGCC
ACACAACCGTTCATGGGCTTGGGGGAAGGGCGAAGAGGGAGACAGAGTGG
CAAATAAAGAGACGGAAAACAGAAGCGACCCCGCTTTGTCAAAGAAGAAG
CCGTAGAGGAAAGGGTGGGGGCAGCAGCGGTAACAACGACCGTGGCCGAG
GTGGGCGCCACACAACCGTTCATGGGCTTGGGGGAAGGGCGAAGAGGGAG
ACAGAGTGGCAAATAAAGCTGCGCTTGTTGCTCAAAGGTGTCTTCTTCTC
CTCGGTGTCGGGAGCCACTACCCTCCCAGCCAAGGCACCCCTCCAGAACG
CCTGGACCGACGTGGTCGCCCTCTTCATGATCTGCAAACACGCGTGACTG
CGCTTGTTGCTCAAAGGTGTCTTCTTCTCCTCGGTGTCGGGAGCCACTAC
CCTCCCAGCCAAGGCACCCCTCCAGAACGCCTGGACCGACGTGGTCGCCC
TCTTCATGATCTGCAAACACGCGTGA
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