mRNA_L-elsbetiae_contig8859.17877.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8859.17877.1
Unique NamemRNA_L-elsbetiae_contig8859.17877.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8859.17877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8859contigL-elsbetiae_contig8859:1286..1806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.111983-CDS-L-elsbetiae_contig8859:1287..14111622816963.111983-CDS-L-elsbetiae_contig8859:1287..1411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8859 1288..1411 -
1691683945.2227733-CDS-L-elsbetiae_contig8859:1287..14111691683945.2227733-CDS-L-elsbetiae_contig8859:1287..1411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8859 1288..1411 -
1622816963.1220148-CDS-L-elsbetiae_contig8859:1681..18061622816963.1220148-CDS-L-elsbetiae_contig8859:1681..1806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8859 1682..1806 -
1691683945.2393818-CDS-L-elsbetiae_contig8859:1681..18061691683945.2393818-CDS-L-elsbetiae_contig8859:1681..1806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8859 1682..1806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8859.17877.1prot_L-elsbetiae_contig8859.17877.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8859 1288..1806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8859.17877.1

>prot_L-elsbetiae_contig8859.17877.1 ID=prot_L-elsbetiae_contig8859.17877.1|Name=mRNA_L-elsbetiae_contig8859.17877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
CGNWVELDKEPGQTLPSGFPHAMYQTDAHQQMLEGVLERPKRFGAGLPPP
EDTKIDYSRVLNYDRQQGDALWAAITTTEFVAP
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mRNA from alignment at L-elsbetiae_contig8859:1286..1806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8859.17877.1 ID=mRNA_L-elsbetiae_contig8859.17877.1|Name=mRNA_L-elsbetiae_contig8859.17877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=521bp|location=Sequence derived from alignment at L-elsbetiae_contig8859:1286..1806- (Laminarionema elsbetiae ELsaHSoW15)
TGTGGGAACTGGGTGGAGCTGGACAAGGAACCGGGACAAACGCTTCCCTC
CGGATTTCCGCATGCCATGTACCAGACCGACGCGCATCAGCAAATGCTCG
AAGGTGTCCTTGAACGGCCGAAGAGGTAAGGCGCGTTATGGTGGCAAGAT
GGTGGTGCACCTCGTGTGTGCATAAGGTGCGAGGGTGCGGCATCTAGGTA
TGCAGACAGTATGACGTAGAAATGGAGTATCGGTGGGTATTACTGTAGTC
TATGACCAGCTGGCGGTTCGTCAATACGCCCAGTCCTTGCATCTTGAGGA
GTGAAGCACCTATGTATCTGCAACTGCCGGGACTCTATCTACCTGCTAAC
ATGTGCAACAATCTCATAGCAATGCCGACATCGAAAAACAAACAGGTTTG
GCGCCGGGCTGCCTCCCCCGGAGGACACCAAAATCGACTACAGCCGGGTA
TTAAACTACGATAGGCAGCAGGGGGACGCACTGTGGGCCGCTATCACCAC
CACCGAGTTTGTCGCCCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8859:1286..1806-

>mRNA_L-elsbetiae_contig8859.17877.1 ID=mRNA_L-elsbetiae_contig8859.17877.1|Name=mRNA_L-elsbetiae_contig8859.17877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig8859:1286..1806- (Laminarionema elsbetiae ELsaHSoW15)
TGTGGGAACTGGGTGGAGCTGGACAAGGAACCGGGACAAACGCTTCCCTC
CGGATTTCCGCATGCCATGTACCAGACCGACGCGCATCAGCAAATGCTCG
AAGGTGTCCTTGAACGGCCGAAGAGTGTGGGAACTGGGTGGAGCTGGACA
AGGAACCGGGACAAACGCTTCCCTCCGGATTTCCGCATGCCATGTACCAG
ACCGACGCGCATCAGCAAATGCTCGAAGGTGTCCTTGAACGGCCGAAGAG
GTTTGGCGCCGGGCTGCCTCCCCCGGAGGACACCAAAATCGACTACAGCC
GGGTATTAAACTACGATAGGCAGCAGGGGGACGCACTGTGGGCCGCTATC
ACCACCACCGAGTTTGTCGCCCCGGTTTGGCGCCGGGCTGCCTCCCCCGG
AGGACACCAAAATCGACTACAGCCGGGTATTAAACTACGATAGGCAGCAG
GGGGACGCACTGTGGGCCGCTATCACCACCACCGAGTTTGTCGCCCCG
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