mRNA_L-elsbetiae_contig883.17857.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig883.17857.1
Unique NamemRNA_L-elsbetiae_contig883.17857.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig883.17857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig883contigL-elsbetiae_contig883:10847..11616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size770
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig883.17857.1prot_L-elsbetiae_contig883.17857.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig883 10939..11340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816961.3850543-UTR-L-elsbetiae_contig883:10846..109381622816961.3850543-UTR-L-elsbetiae_contig883:10846..10938Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig883 10847..10938 +
1691683943.7185218-UTR-L-elsbetiae_contig883:10846..109381691683943.7185218-UTR-L-elsbetiae_contig883:10846..10938Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig883 10847..10938 +
1622816961.4067497-UTR-L-elsbetiae_contig883:11340..116161622816961.4067497-UTR-L-elsbetiae_contig883:11340..11616Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig883 11341..11616 +
1691683943.7381506-UTR-L-elsbetiae_contig883:11340..116161691683943.7381506-UTR-L-elsbetiae_contig883:11340..11616Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig883 11341..11616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816961.3951585-CDS-L-elsbetiae_contig883:10938..113401622816961.3951585-CDS-L-elsbetiae_contig883:10938..11340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig883 10939..11340 +
1691683943.7296376-CDS-L-elsbetiae_contig883:10938..113401691683943.7296376-CDS-L-elsbetiae_contig883:10938..11340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig883 10939..11340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig883.17857.1

>prot_L-elsbetiae_contig883.17857.1 ID=prot_L-elsbetiae_contig883.17857.1|Name=mRNA_L-elsbetiae_contig883.17857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MPLLLFRDMNNLRLSKSIAAHTILQPCTQEWFSLLPAPPPTSHALLSLVP
RGKHERHENNENYHTVPLTPITLKRGMTYSNQPSSGPRQLEPTLLQPVAK
KRDFQACDTSTAREHTNNDNEANRQKTNQEERN*
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mRNA from alignment at L-elsbetiae_contig883:10847..11616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig883.17857.1 ID=mRNA_L-elsbetiae_contig883.17857.1|Name=mRNA_L-elsbetiae_contig883.17857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=770bp|location=Sequence derived from alignment at L-elsbetiae_contig883:10847..11616+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTCGTCTTTTTCTCTCTCCCACCCTCGACACAAGTTTGATTACGAGTT
GTAATCATTTTCTTTCTCAAGCCCACAAGCAACTGCTCTCAAATGCCACT
TTTACTGTTTCGAGACATGAACAATTTACGCTTGTCGAAATCGATAGCAG
CGCACACGATACTACAGCCGTGCACGCAAGAGTGGTTCTCTCTTCTCCCG
GCACCACCACCCACATCACATGCCCTCCTCTCACTTGTCCCCCGCGGGAA
GCATGAAAGGCATGAAAACAATGAGAATTACCATACTGTACCTCTTACAC
CAATAACTTTAAAACGAGGAATGACTTATTCAAACCAGCCCTCTTCAGGC
CCCCGACAACTAGAGCCAACACTTCTCCAACCAGTAGCCAAAAAACGAGA
CTTTCAGGCATGCGACACGTCTACCGCTCGCGAACACACCAACAACGACA
ACGAAGCAAATCGACAGAAAACAAATCAGGAAGAGCGAAATTAGGTATGT
AGGATGTGCGTGGTCTAGGCATCGAGCCGTGAGTATGTGATGAACAGACC
ATTCGTCCAGCACCCCTTTTGGTACCCGGGGGTGGCAGCACGCAAAAACA
AAGGAGGCGTGTCACCCTCTCCCCACGCCAAATGAACAGCACACAGCAAC
GTAGGGTAGGAGCCCACCTGCGCCGAGCCTGCGTACGACAATCAACTTAT
AAACCAACAGAGAACGAATGAAAAACACGGATGTATTCGGGTATAGGGGT
GTGCCACCGCGGGCTTTGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig883:10847..11616+

>mRNA_L-elsbetiae_contig883.17857.1 ID=mRNA_L-elsbetiae_contig883.17857.1|Name=mRNA_L-elsbetiae_contig883.17857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig883:10847..11616+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACTTTTACTGTTTCGAGACATGAACAATTTACGCTTGTCGAAATC
GATAGCAGCGCACACGATACTACAGCCGTGCACGCAAGAGTGGTTCTCTC
TTCTCCCGGCACCACCACCCACATCACATGCCCTCCTCTCACTTGTCCCC
CGCGGGAAGCATGAAAGGCATGAAAACAATGAGAATTACCATACTGTACC
TCTTACACCAATAACTTTAAAACGAGGAATGACTTATTCAAACCAGCCCT
CTTCAGGCCCCCGACAACTAGAGCCAACACTTCTCCAACCAGTAGCCAAA
AAACGAGACTTTCAGGCATGCGACACGTCTACCGCTCGCGAACACACCAA
CAACGACAACGAAGCAAATCGACAGAAAACAAATCAGGAAGAGCGAAATT
AGATGCCACTTTTACTGTTTCGAGACATGAACAATTTACGCTTGTCGAAA
TCGATAGCAGCGCACACGATACTACAGCCGTGCACGCAAGAGTGGTTCTC
TCTTCTCCCGGCACCACCACCCACATCACATGCCCTCCTCTCACTTGTCC
CCCGCGGGAAGCATGAAAGGCATGAAAACAATGAGAATTACCATACTGTA
CCTCTTACACCAATAACTTTAAAACGAGGAATGACTTATTCAAACCAGCC
CTCTTCAGGCCCCCGACAACTAGAGCCAACACTTCTCCAACCAGTAGCCA
AAAAACGAGACTTTCAGGCATGCGACACGTCTACCGCTCGCGAACACACC
AACAACGACAACGAAGCAAATCGACAGAAAACAAATCAGGAAGAGCGAAA
TTAG
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