mRNA_L-elsbetiae_contig8829.17854.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8829.17854.1
Unique NamemRNA_L-elsbetiae_contig8829.17854.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8829.17854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8829contigL-elsbetiae_contig8829:2141..2900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size761
Cds size759
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816960.798267-CDS-L-elsbetiae_contig8829:2140..28991622816960.798267-CDS-L-elsbetiae_contig8829:2140..2899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8829 2141..2899 +
1691683943.261556-CDS-L-elsbetiae_contig8829:2140..28991691683943.261556-CDS-L-elsbetiae_contig8829:2140..2899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8829 2141..2899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8829.17854.1prot_L-elsbetiae_contig8829.17854.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8829 2141..2899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8829.17854.1

>prot_L-elsbetiae_contig8829.17854.1 ID=prot_L-elsbetiae_contig8829.17854.1|Name=mRNA_L-elsbetiae_contig8829.17854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=253bp
AAGDSATAVQLLAPLLLQMQGGGGGLFAAAASAASASAAVVAPAEVDSEK
SAAVVPDDGGGGGSLAVLLREERGRAPSPGGKQEESGAAELAPTTEPPED
DAAAAAAAAGDLADILRKEREEMAPHREKADEEEAASVGASTGLGIAPEA
GSSDECPRGGAATAEAAATMVAAARSGGAEEEIPPVDAPDGFHVGVGVVS
PAPGWESPPRRGRRGHGSGASSGGGGARVGSGSTSPSSQHSSAGSMSWSL
SRS
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mRNA from alignment at L-elsbetiae_contig8829:2141..2900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8829.17854.1 ID=mRNA_L-elsbetiae_contig8829.17854.1|Name=mRNA_L-elsbetiae_contig8829.17854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=760bp|location=Sequence derived from alignment at L-elsbetiae_contig8829:2141..2900+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGGAGACTCCGCCACCGCCGTGCAGCTGCTGGCCCCGCTGCTGCT
GCAGATGCAGGGGGGCGGTGGGGGGCTTTTCGCCGCCGCCGCCTCCGCCG
CTTCCGCTTCGGCCGCCGTCGTCGCCCCGGCGGAGGTAGACTCGGAGAAG
TCTGCGGCGGTGGTGCCGGACGATGGTGGCGGTGGTGGTAGCCTGGCTGT
CCTTTTGCGAGAAGAGAGGGGCCGGGCGCCGTCACCGGGGGGAAAGCAGG
AGGAGAGCGGCGCGGCGGAGTTAGCCCCGACGACGGAACCACCGGAGGAT
GATGCTGCTGCTGCTGCTGCTGCTGCTGGCGACCTCGCCGATATTTTACG
AAAAGAGAGGGAGGAAATGGCACCGCACAGAGAAAAAGCAGATGAAGAAG
AAGCCGCCTCTGTGGGTGCTTCCACCGGTCTTGGTATCGCACCCGAAGCC
GGCAGTTCGGATGAATGCCCGAGAGGTGGAGCAGCAACAGCAGAGGCAGC
GGCGACGATGGTGGCGGCGGCAAGATCAGGCGGAGCGGAAGAAGAAATTC
CTCCGGTCGACGCCCCCGATGGGTTTCACGTCGGTGTCGGTGTCGTGAGC
CCCGCCCCGGGGTGGGAATCCCCTCCGAGGAGGGGGAGAAGGGGACACGG
GAGCGGAGCCAGCAGCGGCGGCGGAGGGGCGCGGGTTGGCTCAGGATCCA
CTTCGCCGTCGTCGCAGCATTCGTCTGCGGGGTCCATGTCGTGGTCGCTC
TCTCGGTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8829:2141..2900+

>mRNA_L-elsbetiae_contig8829.17854.1 ID=mRNA_L-elsbetiae_contig8829.17854.1|Name=mRNA_L-elsbetiae_contig8829.17854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1518bp|location=Sequence derived from alignment at L-elsbetiae_contig8829:2141..2900+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGGAGACTCCGCCACCGCCGTGCAGCTGCTGGCCCCGCTGCTGCT
GCAGATGCAGGGGGGCGGTGGGGGGCTTTTCGCCGCCGCCGCCTCCGCCG
CTTCCGCTTCGGCCGCCGTCGTCGCCCCGGCGGAGGTAGACTCGGAGAAG
TCTGCGGCGGTGGTGCCGGACGATGGTGGCGGTGGTGGTAGCCTGGCTGT
CCTTTTGCGAGAAGAGAGGGGCCGGGCGCCGTCACCGGGGGGAAAGCAGG
AGGAGAGCGGCGCGGCGGAGTTAGCCCCGACGACGGAACCACCGGAGGAT
GATGCTGCTGCTGCTGCTGCTGCTGCTGGCGACCTCGCCGATATTTTACG
AAAAGAGAGGGAGGAAATGGCACCGCACAGAGAAAAAGCAGATGAAGAAG
AAGCCGCCTCTGTGGGTGCTTCCACCGGTCTTGGTATCGCACCCGAAGCC
GGCAGTTCGGATGAATGCCCGAGAGGTGGAGCAGCAACAGCAGAGGCAGC
GGCGACGATGGTGGCGGCGGCAAGATCAGGCGGAGCGGAAGAAGAAATTC
CTCCGGTCGACGCCCCCGATGGGTTTCACGTCGGTGTCGGTGTCGTGAGC
CCCGCCCCGGGGTGGGAATCCCCTCCGAGGAGGGGGAGAAGGGGACACGG
GAGCGGAGCCAGCAGCGGCGGCGGAGGGGCGCGGGTTGGCTCAGGATCCA
CTTCGCCGTCGTCGCAGCATTCGTCTGCGGGGTCCATGTCGTGGTCGCTC
TCTCGGTCCGCCGCCGGAGACTCCGCCACCGCCGTGCAGCTGCTGGCCCC
GCTGCTGCTGCAGATGCAGGGGGGCGGTGGGGGGCTTTTCGCCGCCGCCG
CCTCCGCCGCTTCCGCTTCGGCCGCCGTCGTCGCCCCGGCGGAGGTAGAC
TCGGAGAAGTCTGCGGCGGTGGTGCCGGACGATGGTGGCGGTGGTGGTAG
CCTGGCTGTCCTTTTGCGAGAAGAGAGGGGCCGGGCGCCGTCACCGGGGG
GAAAGCAGGAGGAGAGCGGCGCGGCGGAGTTAGCCCCGACGACGGAACCA
CCGGAGGATGATGCTGCTGCTGCTGCTGCTGCTGCTGGCGACCTCGCCGA
TATTTTACGAAAAGAGAGGGAGGAAATGGCACCGCACAGAGAAAAAGCAG
ATGAAGAAGAAGCCGCCTCTGTGGGTGCTTCCACCGGTCTTGGTATCGCA
CCCGAAGCCGGCAGTTCGGATGAATGCCCGAGAGGTGGAGCAGCAACAGC
AGAGGCAGCGGCGACGATGGTGGCGGCGGCAAGATCAGGCGGAGCGGAAG
AAGAAATTCCTCCGGTCGACGCCCCCGATGGGTTTCACGTCGGTGTCGGT
GTCGTGAGCCCCGCCCCGGGGTGGGAATCCCCTCCGAGGAGGGGGAGAAG
GGGACACGGGAGCGGAGCCAGCAGCGGCGGCGGAGGGGCGCGGGTTGGCT
CAGGATCCACTTCGCCGTCGTCGCAGCATTCGTCTGCGGGGTCCATGTCG
TGGTCGCTCTCTCGGTCC
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