mRNA_L-elsbetiae_contig882.17849.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig882.17849.1
Unique NamemRNA_L-elsbetiae_contig882.17849.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 6.170e-18
Identity = 45/75 (60.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:    1 GGVRSLERTCSATVGAPCIVTE---DPPAPTPAPVTDDQVCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDD 216
            GGVR+  R CS T  APCIVT      PAPTPAP      C  G+ G+ ASD CC  SCGSCGGDGCS RDGG+D
Sbjct:  371 GGVRASGRDCSVTGEAPCIVTSPEPSTPAPTPAPTRAAGTCDGGIVGVQASDVCCALSCGSCGGDGCSDRDGGED 445
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BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.730e-15
Identity = 48/96 (50.00%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 GGVRSLERTCSATVGAPCIVTEDPPAPTPAPVTDDQ----------VCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVRS 258
            GGVRS  R CS T  APCI     PAPTP P               +C  G+ GI +SD CC +SCGSCGG GC+ RDGG+D     ACC GGVR+
Sbjct:   92 GGVRSSGRFCSVTGEAPCITG---PAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGED-----ACCGGGVRA 179
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BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.750e-14
Identity = 48/94 (51.06%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 GGVRSLERTCSATVGAPCIVTEDPPAPTPAP--------VTDDQVCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVRS 258
            GGVR+  R CS T  APCI     PAPTP            +   C  G+ GI ASD CC  SCGSCGG GCS RDGG D     ACC GGVR+
Sbjct:  436 GGVRASGRFCSVTGEAPCITG---PAPTPXXXXXXXXXXTIEVPECDGGIVGIQASDVCCSLSCGSCGGSGCSGRDGGSD-----ACCGGGVRA 521
[Close]
BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 8.520e-14
Identity = 46/94 (48.94%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:    1 GGVRSLERTCSATVGAPCIVTEDPPAPTPAPV-------TDD-QVCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVRS 258
            GGVR+  R CS T  APC+     PAPTP          TD+  +C  G+ GI  SD CC +SCGSCGG GC+ RDGG +     ACC GGVR+
Sbjct:  103 GGVRASGRYCSVTGEAPCMTG---PAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSE-----ACCGGGVRA 188
[Close]
BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.570e-13
Identity = 46/94 (48.94%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 GGVRSLERTCSATVGAPCIVTEDPPAPTPAP--------VTDDQVCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVRS 258
            GGVR+  R CS T  APC+     PAPTP            +  +C   + GI ASD CC  SCGSCGG GCS RDGG D     ACC GGVR+
Sbjct:  219 GGVRASGRFCSITEEAPCMTG---PAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGSD-----ACCGGGVRA 304
[Close]
BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 6.420e-13
Identity = 44/93 (47.31%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 GGVRSLERTCSATVGAPCIVTEDPPAPTPAP--------VTDDQVCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVR 255
            GGVR+  R CS T  APC+     PAPTP            +  +C  G+ GI +SD CC  SCGSCGG GCS RDGG +     +CC GGVR
Sbjct:  278 GGVRASGRYCSITGEAPCMTG---PAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGSE-----SCCGGGVR 362
[Close]
BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.160e-12
Identity = 41/86 (47.67%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 GGVRSLERTCSATVGAPCIVTEDPPAPTPAPVTDDQVCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVRS 258
            GGVR+  R CS T  APC+  E P            +C  G+ GI  SD CC  SCGSCGG GC+ RDGG +     ACC GGVR+
Sbjct:  145 GGVRASGRYCSVTGEAPCMTNEVP------------MCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSE-----ACCGGGVRA 213
[Close]
BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.000e-12
Identity = 44/94 (46.81%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 GGVRSLERTCSATVGAPCIVTEDPPAPTPAP--------VTDDQVCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVRS 258
            GGVR+  R CS T  APC+      APTPA           +   C  G+ GI ASD CC  SCGSCGG GC+ RDGG +     +CC GGVR+
Sbjct:  265 GGVRASGRYCSITGEAPCMTGA---APTPAXXXXXXXXXTVEVPKCDGGIVGIQASDVCCSLSCGSCGGSGCTGRDGGSE-----SCCGGGVRA 350
[Close]
BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.200e-10
Identity = 31/50 (62.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  109 VCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVRS 258
            +C  G+ GI ASD CC  SCGSCGG GCS RDGG D     ACC GGVR+
Sbjct:    1 MCDGGIVGIQASDVCCSASCGSCGGSGCSGRDGGSD-----ACCGGGVRA 45
[Close]
BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Match: A0A6H5K3F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.530e-10
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:   31 SATVGAPCIVTEDPPAPTPAP--------VTDDQVCIAGVPGILASDACCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVRS 258
            S + GA C + E  PAPT             +  +C  G+ GI ASD CC  SCGSCGG GC+ RDGG +     ACC GGVR+
Sbjct:    3 SVSTGA-CTIRETGPAPTXXXXXXXXXXXTVEVPMCDGGIVGIQASDVCCSASCGSCGGSGCTGRDGGAN-----ACCGGGVRA 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig882.17849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G3U7_ECTSI6.170e-1860.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVC9_9PHAE1.730e-1550.00AMOP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JWJ0_9PHAE2.750e-1451.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5D5_ECTSI8.520e-1448.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3Y1_9PHAE1.570e-1348.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4E0_ECTSI6.420e-1347.31N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
D7G3T6_ECTSI1.160e-1247.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTV1_9PHAE3.000e-1246.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVK3_9PHAE3.200e-1062.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3F5_9PHAE4.530e-1045.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig882contigL-elsbetiae_contig882:5859..7819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size263
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig882.17849.1prot_L-elsbetiae_contig882.17849.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig882 5861..7819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816960.3582435-CDS-L-elsbetiae_contig882:5860..59401622816960.3582435-CDS-L-elsbetiae_contig882:5860..5940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig882 5861..5940 -
1691683942.900405-CDS-L-elsbetiae_contig882:5860..59401691683942.900405-CDS-L-elsbetiae_contig882:5860..5940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig882 5861..5940 -
1622816960.371661-CDS-L-elsbetiae_contig882:6806..68841622816960.371661-CDS-L-elsbetiae_contig882:6806..6884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig882 6807..6884 -
1691683942.9136736-CDS-L-elsbetiae_contig882:6806..68841691683942.9136736-CDS-L-elsbetiae_contig882:6806..6884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig882 6807..6884 -
1622816960.3819351-CDS-L-elsbetiae_contig882:7117..71531622816960.3819351-CDS-L-elsbetiae_contig882:7117..7153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig882 7118..7153 -
1691683942.926917-CDS-L-elsbetiae_contig882:7117..71531691683942.926917-CDS-L-elsbetiae_contig882:7117..7153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig882 7118..7153 -
1622816960.3921938-CDS-L-elsbetiae_contig882:7752..78191622816960.3921938-CDS-L-elsbetiae_contig882:7752..7819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig882 7753..7819 -
1691683942.9385023-CDS-L-elsbetiae_contig882:7752..78191691683942.9385023-CDS-L-elsbetiae_contig882:7752..7819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig882 7753..7819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig882.17849.1

>prot_L-elsbetiae_contig882.17849.1 ID=prot_L-elsbetiae_contig882.17849.1|Name=mRNA_L-elsbetiae_contig882.17849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
GGVRSLERTCSATVGAPCIVTEDPPAPTPAPVTDDQVCIAGVPGILASDA
CCPTSCGSCGGDGCSQRDGGDDFSGGAACCVGGVRSL
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mRNA from alignment at L-elsbetiae_contig882:5859..7819-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig882.17849.1 ID=mRNA_L-elsbetiae_contig882.17849.1|Name=mRNA_L-elsbetiae_contig882.17849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1961bp|location=Sequence derived from alignment at L-elsbetiae_contig882:5859..7819- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCGTCAGATCGTTGGAACGGACCTGCTCTGCCACCGTTGGAGCGCC
GTGCATCGTAACGGAGGGTGAGCGGTTTTGAAATATATACCATAGACTAC
AATTAAATCAATAGTGGAGCCTAACCCACATGGAGACGGGACTTGGTGAA
GTTCAACCAGTTTGTATTTCATATACTGTGTAGTGACATCATATTGCGCC
AGCCGAGTAGAAAAAAAACACCTACCATATCTATATTACAAGGATGGAAA
CGACGTTCACGCATACATACGATACCATGCCCGCCGGATGGAGAGGTTGC
TTGTTTCGTGTGTGACTGAGTGCAGTGTCCAAGCTTGTTTATCGTAGAAA
TACCATCTCGGGCTTGTGCAGCACCAGATGTTATATGTACGTGCACCGCA
GCAAGGGCACCCCCGTTTTTCGTGACTGCCACGTGCTGTATTAGGATGGC
TTGGGACGTATGTGTAGCCCAGCTGCCCGTTCTTTCTCGCATGACGTCGT
TGCATCGTTACAACTCCTTCAAGCCTTAAGCGAAACACCCGTCAAACCCC
GAGCAATCCGAGACCGCCGCGCAACGCGACAATATCCCTTTTTGTCCCGG
TTTTCGTTGGATACATAGTCTAACCCGTCGCCGATATCGTGAACCCCGCT
GCTGCCGGTATGACAGACCCGCCCGCGCCCACTCCGGCGCCTGTCACGGA
CGGTGAGTGATTTTGGCACCTGACCACTTCGAACCCTCTATATATACGAA
TTTGATGTTGACGTCAGCTATTAGATCTTCCAAAGCGTGCAAGCACGGTT
CATGTATGGCAAGTCCTCCCGGGAGGAAAGACTGTCAACAGCGTATATAG
GAACCTTTCCTCTGCTGCAGGAAGTGAGTTCTCAAAGCTCAAACCTCTCG
CGGCGTTGCTCTGATGTTGCTGTCGTCACGAGCAGACCAAGTGTGCATCG
CCGGCGTCCCTGGGATTCTGGCCAGTGACGCCTGCTGCCCGACCAGCTGT
GGATCTTGCGGAGGTATGGTCTGTCCAGGACAATTTGTCCTATTACGGTT
TTTTGCGATAACGTTTGAATAAAAACGATTTAGTTAGGCGGAGTTTCAGC
CACGATAGTGATCCCCGCATCAAGAGGGCAAAAAAATATTTCAAATATAT
TTTGGACAATTTTGGACACCCCTACACTAATTTCAAGTAATACAGGGGCC
ACCCGCTTAAAAAAAAAGTTGAAGACTGGGAGAAAATCCGGGTTCTGGAC
AAAATGTTGAATATTATCTCGCGCACCAGAGTTTTCATTGGAAATCGGAA
AAATTTTACCCCTGGGGATTTTCGAGCGGAATCGATTGCCGTGGTCTATT
TTAAAATCTAATGGTTGGGTATCGTAGGAAAAAGCGAACAAATAAGCCTC
TTAAATCCGGTTTTTCGTCGATAACTTATTTATTTCTTAAATCAAAACAA
AATCGGAAAAATATACCCCTGGGGAATTCCGAGAGCTGACCAAATCCGGT
CTCAGAATTGTGCTCAGAGAAAAACACGCCCCAGGAAAAAGCGAACAAGA
TTTTCCGGTTTTTCGGAAGTAAAAGACGAACGAGAAAAATAATAAAAAAA
ATCTTTCCATACAAAGACGCGCCTGGAGACAGGGCGTTTGCCGGTACTTT
TTGGTTTTCGGAACAAATACCTGTGTCCAGAGAAAAGTGCACCTAAGTGC
CGATCGGAATATAGGACATTTTATCCCGGACAAACCATACGTGGATGGAT
CTAGCTACATACCGACACAGGCCCACGTAGCGCCGATTGGTCTATTAAAT
AGAAGTGTTAGACTAGACTAGCAACTCTGAAAATGCCACGTCGTTCACCT
TGTACAACACGAATTTGGCCCTCCCTCAGGCGACGGTTGCAGTCAGAGGG
ACGGTGGCGACGACTTCAGCGGAGGCGCTGCTTGCTGCGTAGGAGGCGTC
AGATCGTTGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig882:5859..7819-

>mRNA_L-elsbetiae_contig882.17849.1 ID=mRNA_L-elsbetiae_contig882.17849.1|Name=mRNA_L-elsbetiae_contig882.17849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig882:5859..7819- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCGTCAGATCGTTGGAACGGACCTGCTCTGCCACCGTTGGAGCGCC
GTGCATCGTAACGGAGGGGAGGCGTCAGATCGTTGGAACGGACCTGCTCT
GCCACCGTTGGAGCGCCGTGCATCGTAACGGAGGACCCGCCCGCGCCCAC
TCCGGCGCCTGTCACGGACGACCCGCCCGCGCCCACTCCGGCGCCTGTCA
CGGACGACCAAGTGTGCATCGCCGGCGTCCCTGGGATTCTGGCCAGTGAC
GCCTGCTGCCCGACCAGCTGTGGATCTTGCGGAGACCAAGTGTGCATCGC
CGGCGTCCCTGGGATTCTGGCCAGTGACGCCTGCTGCCCGACCAGCTGTG
GATCTTGCGGAGGCGACGGTTGCAGTCAGAGGGACGGTGGCGACGACTTC
AGCGGAGGCGCTGCTTGCTGCGTAGGAGGCGTCAGATCGTTGGCGACGGT
TGCAGTCAGAGGGACGGTGGCGACGACTTCAGCGGAGGCGCTGCTTGCTG
CGTAGGAGGCGTCAGATCGTTG
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