mRNA_L-elsbetiae_contig8809.17838.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8809.17838.1
Unique NamemRNA_L-elsbetiae_contig8809.17838.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: D8LFN2_ECTSI (GS1-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFN2_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 1.020e-123
Identity = 183/229 (79.91%), Postives = 200/229 (87.34%), Query Frame = 2 
Query:   92 MAPFSDKPIHGVVFDLDAGTLLDTEGLSSKALQMSIEKFGKVFTWEVKQKMLGLRKESWAPIVIAEFGLEGQLSPDELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRIGIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAWRLE 778
            MA FSDKPI GVVFDLD GTLLDTE LSS++LQ S+ KFGK FTWEVKQK+LGLRKESWAPIVIAE GLEGQLS ++LG  WE NL ELSPQV KC GAE+ T  LKDMG+PQ IATSS+KAAV IKR++HE LF RM+CVVTGDDPEVIEGKPAPDIYL AA R+GIKP+ECLAFEDALSGVR+AKAAGM  VAVPDPRLDK PF+EAGADL+LGSL EWD SAWRLE
Sbjct:    1 MAAFSDKPIRGVVFDLD-GTLLDTEELSSQSLQQSVGKFGKQFTWEVKQKILGLRKESWAPIVIAELGLEGQLSWEDLGAQWEHNLHELSPQVKKCDGAETVTKRLKDMGVPQGIATSSSKAAVSIKRQNHEGLFERMECVVTGDDPEVIEGKPAPDIYLAAARRMGIKPQECLAFEDALSGVRSAKAAGMLVVAVPDPRLDKAPFLEAGADLLLGSLGEWDPSAWRLE 228
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BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: W7T731_9STRA (Had-superfamily hydrolase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T731_9STRA)

HSP 1 Score: 225 bits (573), Expect = 1.860e-69
Identity = 116/219 (52.97%), Postives = 150/219 (68.49%), Query Frame = 2 
Query:  116 IHGVVFDLDAGTLLDTEGLSSKALQMSIEKFGKVFTWEVKQKMLGLRKESWAPIVIAEFGLEGQLSPDELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHED-LFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRIGIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAW 769
            I  +V+DLD GTLLDTE LS++A+Q  +  +GK FTW++K+K+LG+R E W  +V+ + GL  Q+ P  L   WE+ L  ++P V    GA          G+PQAIATSS+   V  KR HHED +FGRM+ +VTGDDP+V+ GKPAPDIYL AA R+G+ PEECL FEDAL+GV + KAAGMF VA+PDPRLD   F +A A  VL SL  +D  +W
Sbjct:   27 IKAIVYDLD-GTLLDTESLSTEAIQAVVGAYGKTFTWDIKKKILGMRGEEWGRVVVDDLGLSDQIEPMMLVKQWERELEVVTPTVQLLPGAREIIQFFDSKGLPQAIATSSSALLVAHKRTHHEDHVFGRMRTIVTGDDPKVVRGKPAPDIYLEAAQRLGVAPEECLVFEDALTGVLSGKAAGMFVVAIPDPRLDAACF-QAHAHQVLKSLDTFDPRSW 243
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BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: A0A0D2VUU1_CAPO3 (HAD-superfamily hydrolase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VUU1_CAPO3)

HSP 1 Score: 204 bits (519), Expect = 1.030e-61
Identity = 106/217 (48.85%), Postives = 144/217 (66.36%), Query Frame = 2 
Query:  125 VVFDLDAGTLLDTEGLSSKALQMSIEKFGKVFTWEVKQKMLGLRKESWAPIVIAEFGLEGQLSPDELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRIGIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAWRL 775
            V+FDLD GTLLDTE LS  A+Q  +++FGK  +WE+K+K+LGL+   W+ IV+  FGL G + P  +   WE N  +L  +  K  GA+  T  L  +GIP AI TSS  AAV++KR  H ++F R   VVTGDDPE+  GKP+PDI+L+AA R+G++PE+CL FEDALSG +A  AAGM  + +PD RLD+ PF  A    +L SL  +  + + L
Sbjct:    9 VLFDLD-GTLLDTEPLSDIAMQGVLDRFGKTMSWELKRKILGLKGSDWSVIVVDHFGLHGLIEPAAIVDGWETNFKQLYSRAQKLPGADRITAHLAQLGIPMAICTSSNSAAVELKRAAHPEMFARCTLVVTGDDPELKNGKPSPDIFLLAAKRLGMRPEQCLVFEDALSGCQAGVAAGMRTIVIPDTRLDRQPFEIATE--ILTSLESFQPAVYGL 222
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BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: A0A6U2ELU4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2ELU4_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.360e-55
Identity = 115/240 (47.92%), Postives = 142/240 (59.17%), Query Frame = 2 
Query:  116 IHGVVFDLDAGTLLDTEGLSSKALQMSIEKF--------------GKVFTWEVKQKMLGLRKESWAPIVIAEFGLEG-----QLSPDELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRIGIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAWRLE 778
            I  V+FDLD GTLLDTE LS KA+  + E                G    WE+K++ LGLR  +W P+VI E+G E        S  E    WE  L EL   V +C GA      L D G+P AIATSS   AV+ KR  HE +FG +  +V G+D  V  GKPAPDIYL AA RIGI P ECL FEDA++GV +A+AAGM+C+AVPDPR++   F+EA AD V+ SL  +D   W LE
Sbjct:   34 IKAVIFDLD-GTLLDTETLSCKAVLDAFEDSMSEEVRETLARSPEGYKLPWELKKRTLGLRGGAWIPMVI-EYGSEHWDVNEAPSVSEFWERWESRLCELCLDVDECPGATDLVQTLHDRGVPIAIATSSRGIAVEKKRVKHEGMFGCIPTIVCGED--VQNGKPAPDIYLEAARRIGIDPSECLCFEDAVAGVESARAAGMYCIAVPDPRMEPNAFIEAEADEVIQSLKHFDYKKWGLE 269
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BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: A0A7S1ZHR4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZHR4_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.630e-50
Identity = 106/249 (42.57%), Postives = 137/249 (55.02%), Query Frame = 2 
Query:  116 IHGVVFDLDAGTLLDTEGLSSKALQMS------------IEKFGKVFTWEVKQKMLGLRKESWAPIVIA-------------EFGLEGQLSP---DELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRIGIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAWRLE 778
            I  V+FDLD GTLLDTE L+ +A+  +            I K G    WE+K K+LG+R   W P+V+              E G+     P   DE    WE NL EL   V +C GA S    L  + +P AIATSS   +V  KR  HE++F   + +VTGDD  V  GKPAPDIY+ AA R+G+ P ECL FEDA++GV++  AAG   VA+PDPR+DK  F    AD VL SL  +D   W ++
Sbjct:    8 IKAVIFDLD-GTLLDTEVLADRAMFQAFGKSLPESVREHIRKDGDKLPWEIKSKILGMRGSEWIPMVLKYAQEHWGVASSGEEDGITTHALPPPVDEFWRRWETNLSELCLDVKECPGATSLVQELSRLNVPLAIATSSRLVSVNKKRIKHEEMFKHFQTIVTGDDKAVKNGKPAPDIYIEAARRLGVHPSECLVFEDAMTGVKSGNAAGCQVVAIPDPRMDKAVFSPM-ADAVLESLWHFDGEMWGIQ 254
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BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: B4FM45_MAIZE ((DL)-glycerol-3-phosphatase 2 n=5 Tax=Andropogoneae TaxID=147429 RepID=B4FM45_MAIZE)

HSP 1 Score: 171 bits (433), Expect = 1.520e-48
Identity = 102/222 (45.95%), Postives = 128/222 (57.66%), Query Frame = 2 
Query:  116 IHGVVFDLDAGTLLDTEGLSSKALQMSIEKFGKVFTWEVKQKMLGLRKESWAPIVIAEFGLEGQLSPDELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRI--GIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAWRL 775
            I  V+FD+D G LLDTEG  +   +  + +FGKVF W VK KM+G        I+  EFGL G L+P++     E  L +L P  V   G      LL   GIP A+AT + K    +K ++HED+F  M  +VTGDDPEV  GKP+PDI+L A  R    ++P  CL FEDA  GV AAK +GM  V VPDPRLD       GAD VL SL E++ S W L
Sbjct:   23 ISHVIFDMD-GLLLDTEGFYTTVQEKILMRFGKVFDWSVKAKMMGKTTAESTRILFEEFGLAGLLTPEQFLEERETMLKKLLPTCVAMPGLLRLINLLHTNGIPIAVATGTHKHHFALKTQNHEDIFSLMHHIVTGDDPEVKAGKPSPDIFLAAMRRFEANVEPSNCLVFEDAPLGVAAAKTSGMHVVMVPDPRLDVSH--HKGADQVLTSLLEFNPSEWGL 241
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BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: A0A5J9W2F8_9POAL (Uncharacterized protein (Fragment) n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9W2F8_9POAL)

HSP 1 Score: 170 bits (431), Expect = 6.330e-48
Identity = 100/222 (45.05%), Postives = 129/222 (58.11%), Query Frame = 2 
Query:  116 IHGVVFDLDAGTLLDTEGLSSKALQMSIEKFGKVFTWEVKQKMLGLRKESWAPIVIAEFGLEGQLSPDELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRI--GIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAWRL 775
            I  V+FD+D G LLDTEG  ++  +  + ++GKVF W +K KM+G +    A I + E GL G L+P++     E  L EL P   K  G       L   GIP A+AT S K    +K ++H+++F  M  +V GDDPEV  GKP+PDI+L A  R    ++P +CL FEDA SGV AAK AGM  V VPDPRLD     EA  D VL SL E+  S W L
Sbjct:   49 ISHVIFDMD-GLLLDTEGFYTQVQEKILARYGKVFDWSLKAKMMGKKAIESARIFVDECGLNGLLTPEQFLEERESMLQELFPSCTKLPGVLRLVHHLHAKGIPMAVATGSHKRHFALKTQNHQEMFSLMHHIVMGDDPEVKSGKPSPDIFLAAMRRFEGNVEPNKCLVFEDAPSGVAAAKNAGMSAVMVPDPRLDVSYHKEA--DQVLSSLLEFKPSEWGL 267
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BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: A0A1B6PGH6_SORBI (Uncharacterized protein n=6 Tax=Panicoideae TaxID=147369 RepID=A0A1B6PGH6_SORBI)

HSP 1 Score: 171 bits (432), Expect = 8.000e-48
Identity = 100/226 (44.25%), Postives = 131/226 (57.96%), Query Frame = 2 
Query:  116 IHGVVFDLDAGTLLDTEGLSSKALQMSIEKFGKVFTWEVKQKMLGLRKESWAPIVIAEFGLEGQLSPDELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRI--GIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAWRLEALA 787
            I  V+FD+D G LLDTEG  ++  +  + ++GKVF W +K KM+G +    A I + E GL G L+P+E     E  L  L P   K  G       L   GIP A+AT S K    +K ++H+++F  M  VV GDDPEV  GKP+PDI+L A  R    I+P +CL FEDA +GV AAK AGM  V VPDPRLD     + GAD VL SL ++  + W L A +
Sbjct:   70 ISHVIFDMD-GLLLDTEGFYTEVQEKILARYGKVFDWSLKAKMMGKKATESARIFVDECGLNGLLTPEEFLEERESMLQALFPSCTKLPGVLRLVHHLHANGIPMAVATGSHKRHFALKTQNHQEMFALMHHVVMGDDPEVKAGKPSPDIFLAAMRRFEGDIEPSKCLVFEDAPAGVAAAKNAGMSAVMVPDPRLDVS--YQKGADQVLSSLLDFKPTEWGLPAFS 292
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BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: A0A2A4ZPJ8_9BACT (HAD family hydrolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A4ZPJ8_9BACT)

HSP 1 Score: 168 bits (425), Expect = 1.220e-47
Identity = 91/220 (41.36%), Postives = 132/220 (60.00%), Query Frame = 2 
Query:  125 VVFDLDAGTLLDTEGLSSKALQMSIEKFGKVFTWEVKQKMLGLRKESWAPIVIAEFGLEGQLSPDELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRIGIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAWRLEAL 784
            +++D+D G LLDTEG+ ++  Q  + ++GKVF W +K+K++G R    A I++    L   +SP +   + +  L+E         GA+  T      GIPQA+ATSS+    + K E H+  F + K +V GDDPE+ EGKPAPDI+L+AA R+G++P ECL FEDA SG+ AA AAGM  V VPDP +D   +  A    ++ SL  +D   W L +L
Sbjct:    8 IIYDMD-GLLLDTEGIYTEVTQEIVAEYGKVFDWTIKKKIIGRRSIQAAQIIVESLDLP--ISPQDYLDSRKDVLLERFRDTQALPGAKELTTHFFKHGIPQALATSSSSPMYEAKYEKHKKWFSQFKQIVRGDDPELKEGKPAPDIFLIAAKRLGVEPAECLVFEDAPSGMEAALAAGMSVVVVPDPNMDHSQYQNASQ--IISSLENFDPEYWGLPSL 222
[Close]
BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Match: A0A7C5MKY7_9BACT (HAD family hydrolase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5MKY7_9BACT)

HSP 1 Score: 166 bits (421), Expect = 2.820e-47
Identity = 94/198 (47.47%), Postives = 123/198 (62.12%), Query Frame = 2 
Query:  182 ALQMSIEKFGKVFTWEVKQKMLGLRKESWAPIVIAEFGLEGQLSPDELGTAWEQNLMELSPQVVKCAGAESATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVIEGKPAPDIYLVAAGRIGIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPRLDKGPFVEAGADLVLGSLSEWDASAWRL 775
            A Q    +FGKVF W+VK KM+GLR +  A +++AE  L   L+ +E      Q L +L PQ     GA+  T  L   GIPQAIATSS +    +K  HH++ F    C+VTGDDPE+  GKPAPDI+L+AA R+G  P  CL  ED+  G+ AA+AAGMF VAVPDP +D   F  AGA  ++ SL+++D S W L
Sbjct:    5 AHQAMAARFGKVFDWKVKSKMIGLRAQDSARVMLAELNLP--LTVEEYLQQRRQILEKLFPQAEPLPGAQRLTRHLHRRGIPQAIATSSDRHDFALKITHHQEWFSIFDCLVTGDDPELERGKPAPDIFLLAAKRMGADPARCLVIEDSPFGIEAARAAGMFSVAVPDPHMDDRAF--AGAHQIIRSLNDFDFSYWGL 198
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8809.17838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFN2_ECTSI1.020e-12379.91GS1-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
W7T731_9STRA1.860e-6952.97Had-superfamily hydrolase n=2 Tax=Monodopsidaceae ... [more]
A0A0D2VUU1_CAPO31.030e-6148.85HAD-superfamily hydrolase n=1 Tax=Capsaspora owcza... [more]
A0A6U2ELU4_9STRA1.360e-5547.92Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1ZHR4_9STRA1.630e-5042.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B4FM45_MAIZE1.520e-4845.95(DL)-glycerol-3-phosphatase 2 n=5 Tax=Andropogonea... [more]
A0A5J9W2F8_9POAL6.330e-4845.05Uncharacterized protein (Fragment) n=2 Tax=Eragros... [more]
A0A1B6PGH6_SORBI8.000e-4844.25Uncharacterized protein n=6 Tax=Panicoideae TaxID=... [more]
A0A2A4ZPJ8_9BACT1.220e-4741.36HAD family hydrolase n=1 Tax=Planctomycetes bacter... [more]
A0A7C5MKY7_9BACT2.820e-4747.47HAD family hydrolase n=1 Tax=Acidobacteria bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8809contigL-elsbetiae_contig8809:1068..5700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.4
Seed ortholog evalue4e-98
Seed eggNOG ortholog2880.D8LFN2
KEGG rclassRC00017
KEGG koko:K10752,ko:K17623
KEGG ReactionR11180
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pseudouridine 5'-phosphatase activity
EggNOG OGsCOG0637@1,KOG2914@2759
EC3.1.3.96
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03036
Ec32 ortholog descriptionGS1-like protein
Ec32 orthologEc-04_001490.1
Exons5
Model size905
Cds size699
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816959.4537218-UTR-L-elsbetiae_contig8809:1067..11821622816959.4537218-UTR-L-elsbetiae_contig8809:1067..1182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8809 1068..1182 -
1691683942.2712102-UTR-L-elsbetiae_contig8809:1067..11821691683942.2712102-UTR-L-elsbetiae_contig8809:1067..1182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8809 1068..1182 -
1622816959.529469-UTR-L-elsbetiae_contig8809:5609..57001622816959.529469-UTR-L-elsbetiae_contig8809:5609..5700Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8809 5610..5700 -
1691683942.347508-UTR-L-elsbetiae_contig8809:5609..57001691683942.347508-UTR-L-elsbetiae_contig8809:5609..5700Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8809 5610..5700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816959.4662247-CDS-L-elsbetiae_contig8809:1182..14371622816959.4662247-CDS-L-elsbetiae_contig8809:1182..1437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 1183..1437 -
1691683942.2819562-CDS-L-elsbetiae_contig8809:1182..14371691683942.2819562-CDS-L-elsbetiae_contig8809:1182..1437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 1183..1437 -
1622816959.4773817-CDS-L-elsbetiae_contig8809:1879..19841622816959.4773817-CDS-L-elsbetiae_contig8809:1879..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 1880..1984 -
1691683942.2904453-CDS-L-elsbetiae_contig8809:1879..19841691683942.2904453-CDS-L-elsbetiae_contig8809:1879..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 1880..1984 -
1622816959.4908504-CDS-L-elsbetiae_contig8809:2604..27471622816959.4908504-CDS-L-elsbetiae_contig8809:2604..2747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 2605..2747 -
1691683942.302962-CDS-L-elsbetiae_contig8809:2604..27471691683942.302962-CDS-L-elsbetiae_contig8809:2604..2747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 2605..2747 -
1622816959.504805-CDS-L-elsbetiae_contig8809:4577..47211622816959.504805-CDS-L-elsbetiae_contig8809:4577..4721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 4578..4721 -
1691683942.3154836-CDS-L-elsbetiae_contig8809:4577..47211691683942.3154836-CDS-L-elsbetiae_contig8809:4577..4721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 4578..4721 -
1622816959.5183547-CDS-L-elsbetiae_contig8809:5557..56091622816959.5183547-CDS-L-elsbetiae_contig8809:5557..5609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 5558..5609 -
1691683942.3290968-CDS-L-elsbetiae_contig8809:5557..56091691683942.3290968-CDS-L-elsbetiae_contig8809:5557..5609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8809 5558..5609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8809.17838.1prot_L-elsbetiae_contig8809.17838.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8809 1183..5609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8809.17838.1

>prot_L-elsbetiae_contig8809.17838.1 ID=prot_L-elsbetiae_contig8809.17838.1|Name=mRNA_L-elsbetiae_contig8809.17838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=233bp
MAPFSDKPIHGVVFDLDAGTLLDTEGLSSKALQMSIEKFGKVFTWEVKQK
MLGLRKESWAPIVIAEFGLEGQLSPDELGTAWEQNLMELSPQVVKCAGAE
SATVLLKDMGIPQAIATSSAKAAVKIKREHHEDLFGRMKCVVTGDDPEVI
EGKPAPDIYLVAAGRIGIKPEECLAFEDALSGVRAAKAAGMFCVAVPDPR
LDKGPFVEAGADLVLGSLSEWDASAWRLEALA*
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mRNA from alignment at L-elsbetiae_contig8809:1068..5700-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8809.17838.1 ID=mRNA_L-elsbetiae_contig8809.17838.1|Name=mRNA_L-elsbetiae_contig8809.17838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4633bp|location=Sequence derived from alignment at L-elsbetiae_contig8809:1068..5700- (Laminarionema elsbetiae ELsaHSoW15)
CCCACGGCACACACCACCAGCCACTCCACACTGACTGTGTGCTAACTCTG
TGCTCAACCGACTTCCCCCTCACTTTGTGCCAACTGAAGAAATGGCACCG
TTCAGCGATAAGCCCATCCATGGGGTTGTTTTTGATCTTGACGGTGAGTT
CAAATAATTCAAACAGAGTTCAAACTATATGCTGCTCATGATAGTTCACG
ATGCGCAGGTCAGCTGAATAGGTGAGCAGCGGCTGGTCGACACGCACGGG
AGTGAGTTTGGATTTTCTAACCTGTTGGTGCGAGGAGAGGCGAGACAGTT
TACGTCTTTGTTGCTATGCCCTTGGTGGTGATACCCTTGCGGACCCATAC
GTATGATATACCAGATGACCGGCATCACTCTCATCACTCTCCACGGTTGT
TGTTCTCCCGTTCCGATGGATCATTTTTCCGCCGCAGCAATTACGATCAA
CGTGAAGTTCAGTCTAGAGGAGGCCCATTCCCCCCTTCCTGCGCCTCTCA
TATACCAGGGAATATTTGACCCGCCGTACAATCCGCCGGAAAGACAAAAA
ATAAATAGCCCACCGGCGGGCTTCGCTGTTGCCCCGTCTTCCCGTACCGC
GGCAAGAAGGTGAACACATGGTTGGGCTACAAAACAGAGAACCTATGAAC
TTACTCGTCACCTATAGACGATATGGGGAAATGGACTGTCGATTTGTTTC
TTATCTGCATGCCTCTACCCACGTGTTAGGTCTAGATACATTTAGATAGA
TGCCCGTATATGCAAATGATCGTCTTGAGTTTGCCTTCTGGGTGGAAACA
ATTTTCAAGATGCAAAAAAACAAAAAAACGGCGCGGGGGGGTGGGGGTCG
CTAGCAACAATTCACTGCCGAGCGACGCGCCCATCATGGATGGATCTCGG
CAGAGATCTTTCCGAATTGAATATTTTGCTTGGATTGATCGATTTTCGCG
TTTATGTAAAACTGGTGGTATGTTTCGAGCAGGGACGCTGCTCGACACGG
AAGGACTTTCGTCGAAAGCTCTCCAGATGAGCATCGAAAAGTTTGGGAAG
GTGTTCACGTGGGAGGTCAAGCAGAAGATGCTCGGTCTCCGCAAGGAATC
TTGGGCACCTATCGTCATCGCTGGTGAGTTTTTGTTTTTTCCTCCCATTA
TTAGCTTATTCGTCGTCTGCCCCACTGGCCCCCTTCCTCCACTACGACTA
GCAGACGACCCACCAACTGGGGTCACACAGGAGGGGGGGGGGGGGAGCCC
CTCCTGCAGTGCCTGCGCGTGGTGCACCAGGTGAACACTTGATTGATTGC
GCGACGAGACGATGAGGTGCCATGATGCACTCTATCATGTCCTGCTGTTC
CGCCTATGACACGTATATATACCGTTGCCCTGATTTCCCCCCGGCGAGGC
TCTTGATTTTTCGGATCCACGCCGCCCCCGGGGGCAAATCAAAGTACCAG
AGGGGGGGATTTTGTTTTTTTCGACAATACCCCCGGGGGAAATCTACCGG
GGGGGGGGGGGGGGGGGCCCCCCACAACAAACGTAGCGGGGGGGGGAGGG
AGACACACCGGGACAAAAAAACAAAAGGAAGGATAAAAAAAANNNNNNNN
NNTTGGGGTGGTCTTTTTTGCGCGCCGCGGGAAGGATGTGCGGGGGGGGG
GGGGTGGGGGGGTGGGCGGGCGGGTGCGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCACTCACACTACATACGTAGCTGCGGAGACAGGCAGAC
ATACCGGTACATACATACACAGAGATGGATCTAAGAACAAGTATTCAGGA
GGCAAAGAGAGGAGGGAAGCGCATGGGGCAGCTTAGCCCGTGATGCCGAA
TCCTCCAACAAGAGGAAAGGGAAAGGTCCAAAACCCAGAGAGTACCCGCA
ACCGCCTTCTTTCAAGCTGCGCACACCGCAATCTGTTTGTTCTTGGTGAG
AAAGGCGGGGATATTTGGTTGTCGAGTTAAACCTCACATTAAAAGCTTTC
ACGATTACATACCTAGTATACGTGCTGGGTGTTACTTGGTGCGGTTTGTT
GCGCGACGGCCTTTTCATCAACACCTTGAACATAATACTTACAGTCGGTC
AACTTGGGGCCGCTATTCATTGTCCTGTGGACACACTGCAAAGCACCACC
AGACGCCGTTTTCCGTTCCAAATAAATGATCTCCTTGTTGCATGTAAACA
GGGTGGAACTTACGAGATTACCACGAGAAAAGCAAGTGGGGTACACCCAA
CCCCCCCCGGGAGAAGTCACTAAAAGTCGCTATGTACCCCCGAGGGGGAA
TCCAAGACCCCGGGGGGGTTTCATGTATTTTCCCCAAAAGGCATCCCCCC
CGGGGAAAATCAAGGAATTCGTGCTTCAAGGCCGAAAAGGTAGTAGGGGT
GGGGGGGGGGGTCCAATTGGGGAGGGGAACTCGGAGCAACGGTATGGGTA
CATTAATGGATGAAGGTGCTGTTGCTTGAAGGTTTTTATACCGCACCTCC
AAGAGGAATACGAAACACACCAGAAAATGCAGAGGCGGCACACATTCACG
AGACAGCCAACTCTGGCGCAAATGGAGTGGATGTATTGCACCTCTGGGAG
GGAGAGAGAGTCTCCTTCGGTACCTTCTCACTTACAGCGTACGCACCGCC
GAGGAAAACGATGGCTATTTATGTACTCTTACCAACTACGGTGTTCCTGT
TAAAGTAAGCTTGAGAGGACCCTTAAGAATCGAGTTGAGGTGCACGTGGA
ACAAGCAGCAGCCTTGATGCCCCTAGTCCTTGAGGCGCACGTATGTGTTG
TTTTCTAATGGTTTCCGACAGATTTGATGCCGCAATGAAGTGCGTAGTTT
ACACGGCTGCGACGGACTCCCCTCCTCAACACCTAATTTTCACGCCGACC
CTCTCGTTGGCTTTTCCATGAATCTTCATCATGCCTGAAACAAAATTATC
CAGAGTTCGGGTTGGAGGGCCAATTGTCGCCGGATGAACTAGGAACGGCC
TGGGAGCAGAACCTCATGGAGCTGAGCCCTCAAGTCGTCAAGTGCGCGGG
GGCAGAATCCGCGACTGTGCTCCTCAAGGACATGGGAATTCCTCAGGTGA
TCAGTCCGGTCCGTTGCCCTTCACCCTCGTCGCGGGATTCTGATAGGTTG
TGATCGCCAGTTGGCGGCGAGTTTTGTAGAATACCCGTGCGCTGCAAGAC
TCAGAAGGAGCCTGTTTTTGCCCGTAAACCCCTTCACAAAGTTATCATAC
GTACATATACATACACAAGTGGCTCTACGAAAGCAAAGACAGCGAGCGGG
CACGGCGCGGCGAGTCTCAAGGCCTCACGGTAAGGTATTATTGGATTGTT
ACGCGGAAAGGTGGCCCATCCGTAAATAGTTGGTGCGGAATACAGCACAG
AGGTGACCACGCGGAAGGTAGTGAGCGCTTCGGAGAGTCTCCCGCAAGAG
GGAGAGTGGGTGGACAAGCGGACACAGCCCTGCTCGTTCGCGAAGCTTGT
TGTGACGAGCGAACCGCTGGGGGAAGCGGATGGACAACTTCTTCTCAGGA
ATCTTGTTTCTGACGAGCGGGCTGCTGGAGCACCTTCCGTAAACCCCTTG
CGCTTTTTGTATTTTGGTCGTTCGTGTCTTCCTATAAACATACTACTTTC
GTATACATCTATATATCTAAACCGTGCCGTGCCGTGCTGTCGTCCCGTTT
ATGCGCGGGTTTTCAGGCCATCGCAACCTCGAGCGCGAAAGCGGCGGTCA
AAATCAAGCGGGAGCACCACGAGGATCTGTTCGGACGCATGAAATGCGTA
GTCACCGGGGACGACCCTGAGGTAACTCTGTCAGCAGCTGCGTTATACCC
CCCCCCTGTCCATCCGTGGTCGTCCTAGATAGCAATACATTCCGCACTCG
TGCAGGAGCAGCACGGCACATAAAATATGAAATAATGGTAGTTTCCGTCT
CAAAGTGGTGTGGAGCACTTGTTTCTTATTTCCACTTGCCGCCACCCGTG
GCATCAAACGCTACGTACCGTCGTAAGCCGAGTAAAAACCTGTTGCCCAA
AGCATGCATGTGCACACTTGATGTGTAGATACACACTTTGAAATATGTAC
ATACGTACGTACCTCTGTGTGCGCATTTGTTTTGCTCGATGTTCGTTGGA
TTCGCGTGGAACGGCAGCCACCTAGAAGTATATATAGAAGTATATAGATA
TGCCGTATATTAATTAATTGCTGTGTCGCATCTCGTTGCCGTCGTCCCAT
CCCATCTCAAAAGGTCATCGAAGGCAAGCCGGCCCCGGACATCTACCTCG
TCGCCGCAGGGCGCATAGGAATCAAGCCCGAGGAGTGCCTCGCTTTCGAG
GACGCTCTGTCCGGCGTCCGGGCAGCCAAGGCCGCCGGCATGTTCTGCGT
CGCCGTGCCCGACCCGCGGCTAGACAAGGGACCGTTCGTGGAGGCCGGGG
CAGACCTGGTGCTGGGGTCTTTGAGCGAGTGGGATGCCTCTGCTTGGCGG
CTTGAGGCTCTGGCCTAGAAGCTAGTGTAGTTAGTTAAATTTTGCTGAGG
GTGGAGATCGAGGTTGCCACCGGGGGTCGTCGTATGTATGTTGTAGTTTT
CTCTTGTTGATGAGTGCCCCCCGACCGCAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8809:1068..5700-

>mRNA_L-elsbetiae_contig8809.17838.1 ID=mRNA_L-elsbetiae_contig8809.17838.1|Name=mRNA_L-elsbetiae_contig8809.17838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig8809:1068..5700- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACCGTTCAGCGATAAGCCCATCCATGGGGTTGTTTTTGATCTTGA
CGATGGCACCGTTCAGCGATAAGCCCATCCATGGGGTTGTTTTTGATCTT
GACGCAGGGACGCTGCTCGACACGGAAGGACTTTCGTCGAAAGCTCTCCA
GATGAGCATCGAAAAGTTTGGGAAGGTGTTCACGTGGGAGGTCAAGCAGA
AGATGCTCGGTCTCCGCAAGGAATCTTGGGCACCTATCGTCATCGCTGCA
GGGACGCTGCTCGACACGGAAGGACTTTCGTCGAAAGCTCTCCAGATGAG
CATCGAAAAGTTTGGGAAGGTGTTCACGTGGGAGGTCAAGCAGAAGATGC
TCGGTCTCCGCAAGGAATCTTGGGCACCTATCGTCATCGCTGAGTTCGGG
TTGGAGGGCCAATTGTCGCCGGATGAACTAGGAACGGCCTGGGAGCAGAA
CCTCATGGAGCTGAGCCCTCAAGTCGTCAAGTGCGCGGGGGCAGAATCCG
CGACTGTGCTCCTCAAGGACATGGGAATTCCTCAGAGTTCGGGTTGGAGG
GCCAATTGTCGCCGGATGAACTAGGAACGGCCTGGGAGCAGAACCTCATG
GAGCTGAGCCCTCAAGTCGTCAAGTGCGCGGGGGCAGAATCCGCGACTGT
GCTCCTCAAGGACATGGGAATTCCTCAGGCCATCGCAACCTCGAGCGCGA
AAGCGGCGGTCAAAATCAAGCGGGAGCACCACGAGGATCTGTTCGGACGC
ATGAAATGCGTAGTCACCGGGGACGACCCTGAGGCCATCGCAACCTCGAG
CGCGAAAGCGGCGGTCAAAATCAAGCGGGAGCACCACGAGGATCTGTTCG
GACGCATGAAATGCGTAGTCACCGGGGACGACCCTGAGGTCATCGAAGGC
AAGCCGGCCCCGGACATCTACCTCGTCGCCGCAGGGCGCATAGGAATCAA
GCCCGAGGAGTGCCTCGCTTTCGAGGACGCTCTGTCCGGCGTCCGGGCAG
CCAAGGCCGCCGGCATGTTCTGCGTCGCCGTGCCCGACCCGCGGCTAGAC
AAGGGACCGTTCGTGGAGGCCGGGGCAGACCTGGTGCTGGGGTCTTTGAG
CGAGTGGGATGCCTCTGCTTGGCGGCTTGAGGCTCTGGCCTAGGTCATCG
AAGGCAAGCCGGCCCCGGACATCTACCTCGTCGCCGCAGGGCGCATAGGA
ATCAAGCCCGAGGAGTGCCTCGCTTTCGAGGACGCTCTGTCCGGCGTCCG
GGCAGCCAAGGCCGCCGGCATGTTCTGCGTCGCCGTGCCCGACCCGCGGC
TAGACAAGGGACCGTTCGTGGAGGCCGGGGCAGACCTGGTGCTGGGGTCT
TTGAGCGAGTGGGATGCCTCTGCTTGGCGGCTTGAGGCTCTGGCCTAG
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