mRNA_L-elsbetiae_contig8807.17837.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8807.17837.1
Unique NamemRNA_L-elsbetiae_contig8807.17837.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8807.17837.1 vs. uniprot
Match: A0A6H5JKC4_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC4_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.050e-22
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 FAAVKDGTETYLVAARELEAGRVIFDRVGGSLSDKRTRHSVQVGQELHMEAEGDLIFLNHSCDPNCQLEVVE 216
            F  VKDGTE +LVAAR LEA + IF RV G ++   TRHSVQV +E H+EA  DL+FLNHSC+PNCQLEVV+
Sbjct:  146 FTVVKDGTEKFLVAARVLEANQAIFARVEGLVTGVSTRHSVQVSKERHLEARCDLMFLNHSCEPNCQLEVVD 217
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BLAST of mRNA_L-elsbetiae_contig8807.17837.1 vs. uniprot
Match: A0A6H5K6N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.460e-20
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    1 FAAVKDGTETYLVAARELEAGRVIFDRVGGSLSDKRTRHSVQVGQELHMEAEGDLIFLNHSCDPNCQLEVVE----PMLVTTAR 240
            +  V+DGTE ++VAAR LEA +V+F RV G ++  +TRHSVQ+ +E H+E   DL  +NHSC+PNCQLEVV+    P L  T R
Sbjct:  103 YTVVQDGTEKFVVAARVLEANQVLFSRVEGLVTGVKTRHSVQLSKERHLETGSDLALMNHSCEPNCQLEVVDTAEQPYLRVTVR 186
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BLAST of mRNA_L-elsbetiae_contig8807.17837.1 vs. uniprot
Match: A0A7V4IW65_9BACT (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V4IW65_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 1.440e-5
Identity = 26/85 (30.59%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:   34 LVAARELEAGRVIFDRVGGSLSDKRTRHSVQVGQELHMEAEGD-------LIFLNHSCDPNCQLEVVEPMLVTTARERVRIVFHH 267
            L+A R   AG ++F ++ GSL D+ +RHSVQ+G+ LH+  + +         ++NHSC+P+  +  +E + + +      I F +
Sbjct:   79 LLAGRSFAAGDILF-KLEGSLEDRPSRHSVQIGELLHVRPDSEGRPERVLWRYMNHSCEPSVAIRGIEVVALRSLEPGEEITFDY 162
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BLAST of mRNA_L-elsbetiae_contig8807.17837.1 vs. uniprot
Match: A0A1Y1WVT2_9FUNG (SET domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1WVT2_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 1.800e-5
Identity = 24/65 (36.92%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:   34 LVAARELEAGRVIFDRVGGSLSDKRTRHSVQVGQELHMEAEGDLIFLNHSCDPNCQLEVVEPMLV 228
            LVA R+ + G V+    G  ++     H+VQVGQ+ H+E   DL++ NHSCDP+   +    + V
Sbjct:   20 LVATRDFKKGSVVHPLEGKPIAGV-FYHTVQVGQDQHIELTNDLVYCNHSCDPSLNFDTARMLTV 83
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BLAST of mRNA_L-elsbetiae_contig8807.17837.1 vs. uniprot
Match: A0A0C3CE42_PILCF (SET domain-containing protein n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3CE42_PILCF)

HSP 1 Score: 50.4 bits (119), Expect = 1.810e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   25 ETYLVAARELEAGRVI--FDRVGGSLSDKRTRHSVQVGQELHMEAEGDLIFLNHSCDPNCQLEV 210
            ++ LVA +  + G VI  FD+      ++RTR S+Q+G+  H E   DL+F NHSCDPN   ++
Sbjct:   35 QSELVAEKTFKRGDVICKFDKYRPG--ERRTRTSIQLGEAEHCELNTDLVFANHSCDPNTAFDI 96
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BLAST of mRNA_L-elsbetiae_contig8807.17837.1 vs. uniprot
Match: Q6BZM4_DEBHA (DEHA2A00286p n=1 Tax=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) TaxID=284592 RepID=Q6BZM4_DEBHA)

HSP 1 Score: 50.1 bits (118), Expect = 2.040e-5
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   19 GTETYLVAARELEAGRVIFDRVGGSLSDKRTRHSVQVGQELHMEAEGDLIFLNHSCDPNCQLEVVEPMLVTTARE 243
            G  + LVA+   + G V+    G +L  KR   +VQ+ ++ H+E   D+++LNHSCDP C ++V + MLV   ++
Sbjct:   25 GYTSKLVASCSFKKGEVLEIITGATLGMKRYT-TVQISEKEHIELNSDIVYLNHSCDPTCIMDV-KNMLVRLIKD 97
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BLAST of mRNA_L-elsbetiae_contig8807.17837.1 vs. uniprot
Match: A0A1Y2FN87_PROLT (SET domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FN87_PROLT)

HSP 1 Score: 49.7 bits (117), Expect = 2.820e-5
Identity = 25/57 (43.86%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:   88 GSLSDKRTRHSVQVGQELHMEAEGDLIFLNHSCDPNCQLEV--VEPMLVTTARERVR 252
            G+   K+   SVQ G+E H E   D +F+NHSCDPNC L V   E M     R+ V+
Sbjct:   42 GTTPAKKAYTSVQRGREEHFELNSDFVFMNHSCDPNCILNVENAEAMFFEARRDIVK 98
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8807.17837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JKC4_9PHAE7.050e-2265.28Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6N9_9PHAE6.460e-2052.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7V4IW65_9BACT1.440e-530.59SET domain-containing protein-lysine N-methyltrans... [more]
A0A1Y1WVT2_9FUNG1.800e-536.92SET domain-containing protein n=1 Tax=Basidiobolus... [more]
A0A0C3CE42_PILCF1.810e-540.63SET domain-containing protein n=1 Tax=Piloderma cr... [more]
Q6BZM4_DEBHA2.040e-536.00DEHA2A00286p n=1 Tax=Debaryomyces hansenii (strain... [more]
A0A1Y2FN87_PROLT2.820e-543.86SET domain-containing protein n=1 Tax=Protomyces l... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8807contigL-elsbetiae_contig8807:2522..2797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816959.423719-CDS-L-elsbetiae_contig8807:2521..27971622816959.423719-CDS-L-elsbetiae_contig8807:2521..2797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8807 2522..2797 +
1691683942.2554407-CDS-L-elsbetiae_contig8807:2521..27971691683942.2554407-CDS-L-elsbetiae_contig8807:2521..2797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8807 2522..2797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8807.17837.1prot_L-elsbetiae_contig8807.17837.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8807 2522..2797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8807.17837.1

>prot_L-elsbetiae_contig8807.17837.1 ID=prot_L-elsbetiae_contig8807.17837.1|Name=mRNA_L-elsbetiae_contig8807.17837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
FAAVKDGTETYLVAARELEAGRVIFDRVGGSLSDKRTRHSVQVGQELHME
AEGDLIFLNHSCDPNCQLEVVEPMLVTTARERVRIVFHHAG*
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mRNA from alignment at L-elsbetiae_contig8807:2522..2797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8807.17837.1 ID=mRNA_L-elsbetiae_contig8807.17837.1|Name=mRNA_L-elsbetiae_contig8807.17837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig8807:2522..2797+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGCGGCAGTGAAGGACGGAACCGAGACGTATCTCGTCGCGGCGCGCGA
GCTGGAGGCAGGCCGTGTCATCTTCGATCGCGTGGGAGGCTCGCTGTCCG
ACAAGCGGACGCGACACAGCGTGCAGGTTGGGCAAGAACTGCACATGGAA
GCCGAGGGCGACCTAATATTCTTGAATCACAGCTGCGACCCGAACTGCCA
GCTGGAGGTGGTGGAGCCGATGCTTGTCACTACCGCGCGCGAAAGGGTGA
GAATAGTGTTCCACCACGCAGGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8807:2522..2797+

>mRNA_L-elsbetiae_contig8807.17837.1 ID=mRNA_L-elsbetiae_contig8807.17837.1|Name=mRNA_L-elsbetiae_contig8807.17837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig8807:2522..2797+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGCGGCAGTGAAGGACGGAACCGAGACGTATCTCGTCGCGGCGCGCGA
GCTGGAGGCAGGCCGTGTCATCTTCGATCGCGTGGGAGGCTCGCTGTCCG
ACAAGCGGACGCGACACAGCGTGCAGGTTGGGCAAGAACTGCACATGGAA
GCCGAGGGCGACCTAATATTCTTGAATCACAGCTGCGACCCGAACTGCCA
GCTGGAGGTGGTGGAGCCGATGCTTGTCACTACCGCGCGCGAAAGGGTGA
GAATAGTGTTCCACCACGCAGGGTAGTTCGCGGCAGTGAAGGACGGAACC
GAGACGTATCTCGTCGCGGCGCGCGAGCTGGAGGCAGGCCGTGTCATCTT
CGATCGCGTGGGAGGCTCGCTGTCCGACAAGCGGACGCGACACAGCGTGC
AGGTTGGGCAAGAACTGCACATGGAAGCCGAGGGCGACCTAATATTCTTG
AATCACAGCTGCGACCCGAACTGCCAGCTGGAGGTGGTGGAGCCGATGCT
TGTCACTACCGCGCGCGAAAGGGTGAGAATAGTGTTCCACCACGCAGGGT
AG
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