mRNA_L-elsbetiae_contig8754.17789.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8754.17789.1
Unique NamemRNA_L-elsbetiae_contig8754.17789.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8754.17789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8754contigL-elsbetiae_contig8754:1205..1896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size493
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816955.4807491-CDS-L-elsbetiae_contig8754:1206..16381622816955.4807491-CDS-L-elsbetiae_contig8754:1206..1638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8754 1207..1638 -
1691683939.3111508-CDS-L-elsbetiae_contig8754:1206..16381691683939.3111508-CDS-L-elsbetiae_contig8754:1206..1638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8754 1207..1638 -
1622816955.4927564-CDS-L-elsbetiae_contig8754:1839..18961622816955.4927564-CDS-L-elsbetiae_contig8754:1839..1896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8754 1840..1896 -
1691683939.3215218-CDS-L-elsbetiae_contig8754:1839..18961691683939.3215218-CDS-L-elsbetiae_contig8754:1839..1896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8754 1840..1896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8754.17789.1prot_L-elsbetiae_contig8754.17789.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8754 1207..1896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8754.17789.1

>prot_L-elsbetiae_contig8754.17789.1 ID=prot_L-elsbetiae_contig8754.17789.1|Name=mRNA_L-elsbetiae_contig8754.17789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
AKRLIILGRGIPIISWNFQACTCHLASGIFALFTRFEEPAAAAAARRWST
RRSTYTLTLDASSSRRLSFLATGTAAAQQLMQRLSPQKLAIRRPHNLARR
PQNVARRWSDPLVGGGVAGVFGDQYGGPSPVKTTLEDHHQQEWRRGTVRW
AGTSGGRRGTGRL
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mRNA from alignment at L-elsbetiae_contig8754:1205..1896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8754.17789.1 ID=mRNA_L-elsbetiae_contig8754.17789.1|Name=mRNA_L-elsbetiae_contig8754.17789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=692bp|location=Sequence derived from alignment at L-elsbetiae_contig8754:1205..1896- (Laminarionema elsbetiae ELsaHSoW15)
GCTAAGCGCCTGATAATACTTGGGCGAGGCATCCCAATCATTTCTTGGAA
CTTCCAGGTACTACCAACCTTGTATCTAAGCAAGCTCATACCCTTGTTAG
TGGTCTGTTCTATCGTATCTTTCGCTCGACATTTTCGTTCGTAGTTGGCC
ATATGCCCATCCTGTTGTTCGTTTGGTGTCCCGTACTTGTAGCAAAATAA
CCCCCCCAATTGTCCACGGCCTACATATGTACCCCCCCAACCATCCTTCA
CGACGCAGGCTTGCACCTGCCACTTGGCCTCTGGGATCTTCGCCCTTTTC
ACAAGATTTGAAGAGCCGGCGGCGGCGGCGGCGGCGAGAAGATGGTCGAC
ACGACGGTCGACCTACACCCTCACCCTGGACGCGAGCTCTTCAAGGCGTC
TCTCGTTCCTCGCCACCGGCACGGCCGCGGCTCAGCAGTTAATGCAGCGG
CTCAGCCCGCAAAAATTGGCAATAAGAAGACCACATAATTTGGCGAGGAG
ACCACAGAACGTGGCAAGAAGGTGGTCTGACCCCCTAGTGGGTGGCGGCG
TTGCCGGCGTCTTCGGTGACCAATACGGCGGACCATCACCTGTCAAAACG
ACTCTTGAAGACCACCACCAGCAGGAGTGGCGGCGCGGCACCGTTCGGTG
GGCGGGCACATCAGGCGGACGAAGAGGCACTGGTCGCTTATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8754:1205..1896-

>mRNA_L-elsbetiae_contig8754.17789.1 ID=mRNA_L-elsbetiae_contig8754.17789.1|Name=mRNA_L-elsbetiae_contig8754.17789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig8754:1205..1896- (Laminarionema elsbetiae ELsaHSoW15)
GCTAAGCGCCTGATAATACTTGGGCGAGGCATCCCAATCATTTCTTGGAA
CTTCCAGGCTAAGCGCCTGATAATACTTGGGCGAGGCATCCCAATCATTT
CTTGGAACTTCCAGGCTTGCACCTGCCACTTGGCCTCTGGGATCTTCGCC
CTTTTCACAAGATTTGAAGAGCCGGCGGCGGCGGCGGCGGCGAGAAGATG
GTCGACACGACGGTCGACCTACACCCTCACCCTGGACGCGAGCTCTTCAA
GGCGTCTCTCGTTCCTCGCCACCGGCACGGCCGCGGCTCAGCAGTTAATG
CAGCGGCTCAGCCCGCAAAAATTGGCAATAAGAAGACCACATAATTTGGC
GAGGAGACCACAGAACGTGGCAAGAAGGTGGTCTGACCCCCTAGTGGGTG
GCGGCGTTGCCGGCGTCTTCGGTGACCAATACGGCGGACCATCACCTGTC
AAAACGACTCTTGAAGACCACCACCAGCAGGAGTGGCGGCGCGGCACCGT
TCGGTGGGCGGGCACATCAGGCGGACGAAGAGGCACTGGTCGCTTAGCTT
GCACCTGCCACTTGGCCTCTGGGATCTTCGCCCTTTTCACAAGATTTGAA
GAGCCGGCGGCGGCGGCGGCGGCGAGAAGATGGTCGACACGACGGTCGAC
CTACACCCTCACCCTGGACGCGAGCTCTTCAAGGCGTCTCTCGTTCCTCG
CCACCGGCACGGCCGCGGCTCAGCAGTTAATGCAGCGGCTCAGCCCGCAA
AAATTGGCAATAAGAAGACCACATAATTTGGCGAGGAGACCACAGAACGT
GGCAAGAAGGTGGTCTGACCCCCTAGTGGGTGGCGGCGTTGCCGGCGTCT
TCGGTGACCAATACGGCGGACCATCACCTGTCAAAACGACTCTTGAAGAC
CACCACCAGCAGGAGTGGCGGCGCGGCACCGTTCGGTGGGCGGGCACATC
AGGCGGACGAAGAGGCACTGGTCGCTTA
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