mRNA_L-elsbetiae_contig8731.17763.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8731.17763.1
Unique NamemRNA_L-elsbetiae_contig8731.17763.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8731.17763.1 vs. uniprot
Match: A0A6H5L9K9_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.590e-10
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  116 SSPQNSAAPRNDDIQQKLEKLRLFEELDRRLMARVGVHLADVGDLSSPALTKIL 277
            SSP  + +    +I+QKLE+L+ FEELDRRLM RVGVHLADVGDLSSP L +I+
Sbjct: 2045 SSPSAAGSDDEVEIRQKLERLKRFEELDRRLMERVGVHLADVGDLSSPTLARIV 2098
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8731.17763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9K9_9PHAE5.590e-1064.81GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8731contigL-elsbetiae_contig8731:2281..4378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size534
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8731.17763.1prot_L-elsbetiae_contig8731.17763.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8731 2281..4376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816953.5070686-CDS-L-elsbetiae_contig8731:2280..23581622816953.5070686-CDS-L-elsbetiae_contig8731:2280..2358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8731 2281..2358 +
1691683937.8866992-CDS-L-elsbetiae_contig8731:2280..23581691683937.8866992-CDS-L-elsbetiae_contig8731:2280..2358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8731 2281..2358 +
1622816953.518607-CDS-L-elsbetiae_contig8731:2972..30601622816953.518607-CDS-L-elsbetiae_contig8731:2972..3060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8731 2973..3060 +
1691683937.897283-CDS-L-elsbetiae_contig8731:2972..30601691683937.897283-CDS-L-elsbetiae_contig8731:2972..3060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8731 2973..3060 +
1622816953.5298066-CDS-L-elsbetiae_contig8731:4011..43761622816953.5298066-CDS-L-elsbetiae_contig8731:4011..4376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8731 4012..4376 +
1691683937.91075-CDS-L-elsbetiae_contig8731:4011..43761691683937.91075-CDS-L-elsbetiae_contig8731:4011..4376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8731 4012..4376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8731.17763.1

>prot_L-elsbetiae_contig8731.17763.1 ID=prot_L-elsbetiae_contig8731.17763.1|Name=mRNA_L-elsbetiae_contig8731.17763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
HGRGPGRGHGPGGASQGREFSRGVPQQHVARRARRGGEELAAELRRASQR
RHPAKVGKAATFRGARQTADGARRRPPGGRRRPKQPSSHQDPEGHRGALG
SLYAIIFIPRAAAAAAAAAAAAAPIPRPFSGGIHCGRGRRHQRPGLSGRE
LCDRDRFVEVADPGSLAGFDSQRRPHR
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mRNA from alignment at L-elsbetiae_contig8731:2281..4378+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8731.17763.1 ID=mRNA_L-elsbetiae_contig8731.17763.1|Name=mRNA_L-elsbetiae_contig8731.17763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2098bp|location=Sequence derived from alignment at L-elsbetiae_contig8731:2281..4378+ (Laminarionema elsbetiae ELsaHSoW15)
CATGGGCGTGGGCCTGGGCGTGGGCATGGGCCTGGCGGAGCGAGCCAAGG
GCGGGAGTTCTCCAGGGGTGTCCCGCAGGTGCGCGATGATGATGATGGGA
CCGCCGTCGCGAAGAATTCCTGTCTATATATATGTATAAATAATAGACAG
GGGTTCCGTACCCTACCCCTAACCCCAACCCCAAACCGACCCCCCATTAG
CTTTTCCATGCTATATCTATCCCGCATGATTTATTCCAGTAGCGAAGGCT
ACTTTTTTTTTCTTTTTCCCTCCCATTATTGGCTTATTTATCGTCTGCCC
CACCGGCCCCCATACTCCACTGCGACTATTTAGCTAGACGACCCAACCGG
GGTCACACAGCTACGGTTGTGATGATGTAGCTCTTGCTCGCCTGGAGAAG
GCCCTGGTTGTCGGTATTTACATCCGGCTTTTTCGAGTGATGGAAGTTCG
ATGCACCAACAACCATCGACCGCTGTGCGACTGGTGAATTGCTATAAATA
CGCCCCCCCCTTGGCCGGTGTGGGGGGGTGGCTGCTGTGCCCCTCCCCTG
CCAAGACAAGACAAGGCGTATGTATGTGGGTATACATCCACACATGTATG
TGTCGATTTTACCCGGAATACACATTTACATACTCTCGCTGCTGCCACCG
GGTGTGCGTGCGACTTTCTCCGTTTTTTTTCTTGTTCAGCAGCAGCACGT
GGCACGACGCGCCCGACGCGGAGGTGAAGAGCTCGCCGCAGAACTCCGCC
GCGCCTCGCAACGACGACATCCAGCAAAAGGTGCCTTGTTTTCTTTTTTG
ACGTTTCAAGCATATGCAGGAGGGCTATGTGCCGCTTTGCAGCCTTTGCC
GGCAGGTCAGAGACATCGGGGGGTACATAGTGCGGTCGGTGGTCGGACCC
CCCCCTCCGTCCAAAATTTGGACGAGGGGGGTCCAAACCGATGCTTCGTA
TATATATTCAGCAGCGTTGAAGATTGGTCGGCAAAAAAAGTTCGATACGA
TTTTTTAAAATATCGAGAAAAATAAGCAAATACCGATATTTTTCTCGATA
TTTACTAGGAAAAATACTCGATTCGTATCGAGCATCGATACCCGATTCAA
TACGCCTGTGTTAGTGGGGTTCGGGTCTGTTCTTCTGTTTTTGGGCCAAA
GAAAAAAAAAAACTTTGAACACAGATGCGGAACTCAAAGTTGGAACCTTC
CTCACGGTTCCAACGTGGCTCTGTGGTGATTATAGGTTTTCATTCCAAGT
GGATGCCAACTTGATTCAATGTTGAAGAAGAAATATTGGGGGGCCGGCGC
TGAACATGATCCACCCCCTGAAAATTGATACGACGGGACCCCTAGAGGGC
CCTAAAGGGGGGCCGGTAGCTTGGATCCGACCACCTCCCCCAAAAATATA
TCGAGAGTATCGAATACCGATCTCGATACCCGATACTGATTCGTATGGAC
AAAAATCGGTGCTGAAACCGGCAATTTTGATAGAGCGTATTGCCCGAAAA
AATCGAATTCGTAGGTATCGAAACTCAATGACCAATCTGCAATACTGATA
TTCAGTTGATTTAGCCCCCACGCCCTTGCCCTTAAACGTGAGCATCACAA
TCTCTGGACCTCCCCGCCCGCCAAACATTCGTCGAAACGTTTTAACCAAG
CCCCCTCCCTCCCCTCTCCCCACACTGCTCGCCTGTCCACCCGATGCGGG
CCGTTTCCTCCTGTGCCGTGGAAAAAAAAAGTTGGAAAAGCTGCGACTTT
TCGAGGAGCTAGACAGACGGCTGATGGCGCGCGTCGGCGTCCACCTGGCG
GACGTCGGCGACCTAAGCAGCCCAGCTCTCACCAAGATCCTGAGGGACAC
CGAGGGGCCCTCGGGAGCCTCTACGCCATCATCTTCATTCCACGAGCAGC
AGCAGCAGCAGCAGCGGCAGCAGCGGCGGCAGCACCAATACCCCGCCCCT
TCTCCGGCGGGATCCACTGCGGCCGCGGCCGCCGCCATCAGCGGCCTGGG
CTTTCCGGACGAGAACTCTGCGATCGGGATCGATTTGTCGAAGTCGCCGA
CCCCGGGAGCCTCGCTGGCTTCGATTCTCAACGGCGGCCCCATCGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8731:2281..4378+

>mRNA_L-elsbetiae_contig8731.17763.1 ID=mRNA_L-elsbetiae_contig8731.17763.1|Name=mRNA_L-elsbetiae_contig8731.17763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig8731:2281..4378+ (Laminarionema elsbetiae ELsaHSoW15)
CATGGGCGTGGGCCTGGGCGTGGGCATGGGCCTGGCGGAGCGAGCCAAGG
GCGGGAGTTCTCCAGGGGTGTCCCGCAGCATGGGCGTGGGCCTGGGCGTG
GGCATGGGCCTGGCGGAGCGAGCCAAGGGCGGGAGTTCTCCAGGGGTGTC
CCGCAGCAGCACGTGGCACGACGCGCCCGACGCGGAGGTGAAGAGCTCGC
CGCAGAACTCCGCCGCGCCTCGCAACGACGACATCCAGCAAAAGCAGCAC
GTGGCACGACGCGCCCGACGCGGAGGTGAAGAGCTCGCCGCAGAACTCCG
CCGCGCCTCGCAACGACGACATCCAGCAAAAGTTGGAAAAGCTGCGACTT
TTCGAGGAGCTAGACAGACGGCTGATGGCGCGCGTCGGCGTCCACCTGGC
GGACGTCGGCGACCTAAGCAGCCCAGCTCTCACCAAGATCCTGAGGGACA
CCGAGGGGCCCTCGGGAGCCTCTACGCCATCATCTTCATTCCACGAGCAG
CAGCAGCAGCAGCAGCGGCAGCAGCGGCGGCAGCACCAATACCCCGCCCC
TTCTCCGGCGGGATCCACTGCGGCCGCGGCCGCCGCCATCAGCGGCCTGG
GCTTTCCGGACGAGAACTCTGCGATCGGGATCGATTTGTCGAAGTCGCCG
ACCCCGGGAGCCTCGCTGGCTTCGATTCTCAACGGCGGCCCCATCGATTG
GAAAAGCTGCGACTTTTCGAGGAGCTAGACAGACGGCTGATGGCGCGCGT
CGGCGTCCACCTGGCGGACGTCGGCGACCTAAGCAGCCCAGCTCTCACCA
AGATCCTGAGGGACACCGAGGGGCCCTCGGGAGCCTCTACGCCATCATCT
TCATTCCACGAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCGGCGGCAGCA
CCAATACCCCGCCCCTTCTCCGGCGGGATCCACTGCGGCCGCGGCCGCCG
CCATCAGCGGCCTGGGCTTTCCGGACGAGAACTCTGCGATCGGGATCGAT
TTGTCGAAGTCGCCGACCCCGGGAGCCTCGCTGGCTTCGATTCTCAACGG
CGGCCCCATCGA
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