mRNA_L-elsbetiae_contig872.17746.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig872.17746.1
Unique NamemRNA_L-elsbetiae_contig872.17746.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig872.17746.1 vs. uniprot
Match: D7FWL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWL1_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.140e-22
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:    1 SEYKKLKAKMKRLKKIKHDMQNPAQALKRKLQPDAYKEAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKKLSKLKKMMESEVNSKP--RGMMPPEGHSGPRDGAAVDSDHGGGGXDSSSDCSS 366
            SEYKKLKAKM++++K+K D+QNP QA+KRK+QPD YK+AK     XXXXXXXXXXXXXXXXXXXXXX LKKLSKLKKMM+ EV+SKP  RGMMPPEGHSG R GAA D  +      SSSDCSS
Sbjct:    6 SEYKKLKAKMRKVQKLKRDLQNPGQAMKRKMQPDIYKKAKRTAHQXXXXXXXXXXXXXXXXXXXXXXRLKKLSKLKKMMKGEVHSKPKPRGMMPPEGHSGARHGAAPDDGY------SSSDCSS 123
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig872.17746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWL1_ECTSI3.140e-2271.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig872contigL-elsbetiae_contig872:15620..18444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_002320.1
Exons2
Model size1468
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig872.17746.1prot_L-elsbetiae_contig872.17746.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig872 15647..17435 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.415374-UTR-L-elsbetiae_contig872:15619..156461622816952.415374-UTR-L-elsbetiae_contig872:15619..15646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig872 15620..15646 +
1691683937.1085622-UTR-L-elsbetiae_contig872:15619..156461691683937.1085622-UTR-L-elsbetiae_contig872:15619..15646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig872 15620..15646 +
1622816952.4495757-UTR-L-elsbetiae_contig872:17435..184441622816952.4495757-UTR-L-elsbetiae_contig872:17435..18444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig872 17436..18444 +
1691683937.1412573-UTR-L-elsbetiae_contig872:17435..184441691683937.1412573-UTR-L-elsbetiae_contig872:17435..18444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig872 17436..18444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.4265532-CDS-L-elsbetiae_contig872:15646..158651622816952.4265532-CDS-L-elsbetiae_contig872:15646..15865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 15647..15865 +
1691683937.1206193-CDS-L-elsbetiae_contig872:15646..158651691683937.1206193-CDS-L-elsbetiae_contig872:15646..15865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 15647..15865 +
1622816952.4385622-CDS-L-elsbetiae_contig872:17222..174351622816952.4385622-CDS-L-elsbetiae_contig872:17222..17435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 17223..17435 +
1691683937.13142-CDS-L-elsbetiae_contig872:17222..174351691683937.13142-CDS-L-elsbetiae_contig872:17222..17435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 17223..17435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig872.17746.1

>prot_L-elsbetiae_contig872.17746.1 ID=prot_L-elsbetiae_contig872.17746.1|Name=mRNA_L-elsbetiae_contig872.17746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MKRLKKIKHDMQNPAQALKRKLQPDAYKEAKRKVHQVKNPGQALKRKLQP
DAYKRAKRRLKKLSKLKKMMESEVNSKPRGMMPPEGHSGPRDGAAVDSDH
GGGGGDSSSDCSSVSSGSDLSDLSDLSDLSDSDYYGGDSSGSS*
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mRNA from alignment at L-elsbetiae_contig872:15620..18444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig872.17746.1 ID=mRNA_L-elsbetiae_contig872.17746.1|Name=mRNA_L-elsbetiae_contig872.17746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2825bp|location=Sequence derived from alignment at L-elsbetiae_contig872:15620..18444+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGAGTACAAGAAGCTCAAGGCGAAGATGAAGCGCCTGAAGAAGATCAA
GCACGACATGCAGAACCCGGCGCAGGCCCTCAAGCGCAAGCTTCAGCCAG
ACGCCTACAAGGAGGCCAAGCGCAAGGTCCACCAAGTGAAGAACCCCGGA
CAAGCCCTCAAGCGCAAGCTTCAGCCGGACGCCTACAAAAGGGCCAAGCG
CAGGCTGAAGAAGCTCTCCAAGCTCAAGAAGATGATGGAGAGCGAGGTGA
GCGCGATACGTACCGTAGGTGACATAAGTTAAGACACCCCCTGGACCGAT
TTTGAAAGCTTGGTCACTCCGCAACGAATACAATTCTAACCATAAACGCC
ACATTTTCGGACAGCTCTCGACGAGATCTTTCCAACGCCGCCCTTTTCGG
GGCTGACGCCCGGCTTGCTGTGGAGTACTTGAGCTTTGAGAATCGGTCCA
GGGGGTGTCTTATCTTATGTCACCTACGGTACGTACATATTGTACGCCGA
AGGCACAAAGACCAACAGGTGACAGCCTTGTACGTAGTCAGTAACGCAGA
GCAAATACCTGGGTGCTGCTGATTTTATCAAGGCAGTTGAGAAACGTCAA
CACACCCTCTGTATTTACCCGAACGCAAAAAAAACGTCGGCCACGGAGCT
CCTCGTGTATCTATGGCTAGCTATTCGTACCTCACATGCGTTGCAGGGGG
CCCTGTACCACTCTGTCTTCCGGTTAAATCATGCCAACGAATCCTACATA
GTGACGACGCCTAAAGCAGGCATCCCCTGTGGGATGCACGGTCAACCAGG
TACAGCAGTGACTGGTGCGGCGGCTAATTTTTTTTCATCTTGGATGATCT
ACTTCAGCACCCTGTTGGCATTGCGGCAGAAGAGCAGTCAAGTATGTGCA
CTCTCTTGACTACACAGATCGTCGTTAAATTTTGTATCCGGGCTTCCACC
ATATATTCTTCAAGTCATATCTGGAGGTAGGCATGTATTTCATCGTGCCA
ACGCGCCAACCTTGGTCGCTGCTGACTACTTCATTTATGACTGTGTTTTG
GGTCGATTTTAGGTCACCTCCGCGGGCCTCTAGCGAGTGCTGTATTGGCG
ATCAGAAGTTCTACGATAGGTTTTCGGGCCTTTTCCAGCGCTTTCCCTAC
GTTGTGGCGGAAGGACAGCTAGTTCCGTGCACTTTGTTTGAGTAGGACGT
CGCCCATAACGTTAGCCTACCGAGAGCTGAGAAAGAAGGCTGCTCGAGCA
GCAACAACCGATTAACTCTCGGTTGCGATCGCCAAGGATTCTCTGGTTCA
AAGTACCCTACTTTGTAGGGGTACAATAACTGCTTGCGAAACAGTGTTCA
TGATTGTCTGGAAGTGCTGTGGTAATTTTGTGTGAAGCAGAGGTGTACCA
GCGGTAGCTAAGGTGTACTAAGGTGTACCCAAACGGGCCCTCTCCCGATG
AATCCCAGGGGGGTCCGGGGATTCACGGTGGGTACCTATTTGTACTCTGT
TTTTGTACCACGGCAGTGCACCATTTTTCGGCATGAAGTTTGCTGGAAAC
GTGTCAGACCCTTAAACCCCTCTCTCCGTATACCCCCCCCCCCCTCCCCC
AAGGTCAACTCGAAGCCCCGGGGCATGATGCCCCCCGAAGGACACAGCGG
GCCTCGTGACGGAGCCGCCGTCGACAGCGACCACGGGGGGGGTGGGGGGG
ACTCGAGCTCGGACTGCTCCAGCGTCAGCTCGGGGTCCGATTTGTCCGAC
TTGTCAGATCTGTCGGACTTGTCCGATTCGGATTATTATGGCGGAGACAG
CAGTGGCTCCAGCTAAAGCTGTACAGCAGTTAGTCGTTGGTTGTTCGTCA
AGAGCAGGGCAGGCGTTTTGCGTGCCTGCTTGGCCCAAGGACCTGCTGTA
TTCAAGCCGACAGGGCACGGTATTTATGCCTTTTTTTTTCCCGAGTATTT
TGTGTTCGAGTCTGACGTGGTGTCTGGGAAAGGCGGCTGTGTCCTTGGTT
GAATATAACATATACACGGGTGAGCAATGAATGTGCGCTTGACGCGCCAG
TAGACATATTTGATTTTTTTATTATTATTAGACCGACCTGTTCTGTGTGC
CTGGGCGTGTGGAGATGATACGCGGCGGTGGTTGACCCACAGCTTCACCG
GTTTGCTGTCTGTTTTTCTGTCTTGATCTACGCCGGCGTGTAGGCAATGC
GCTGCTTGTTGCGTCTTATGTGTGGCGGTATGTGCTTTTAGTGTGCTTGC
TTGGTGAAGGGCTCCCCCCCGCCCTCCCCGTGCCCAGTCAGTTGGTGAAA
AATAGCCAGCTTCAGTTCTTGCTTCGAGAGCGATGGTTAGTGATAATGGC
GGCCCCAGCCGATGCAACGATGGGGAGAGGCGGCGCACAACCGTGCGGCA
AGGGTATCGAGGTCTTCCGAGAGCTGGATAATAATGTTTTATGTCTCGGT
TTTTACGCCGCCTTCGCAAGATCGATTCGGAAGGTGTGTCTCAAACTTCA
AATTAAAATATACCTACTGTGTGTGTGTCCAGCACACTCCGGCGACCCTG
CATGGGTCGGGACGGGACGCACGGATAGTGGTGACAACTGGGGTGGTGGC
GACAGCGGTGGTGTATGAGATTGCTGCGGAATGTAGCCAACCGTGCCGTT
TACTTCCTTCGGCGGGTTTTTTGTGATCGGAGCATACGCCCTTCCGCTGA
CCAGAGTGTGCCGCCATCCGCGTGCATGGTGTAAGAAGTACACACCGGCT
GTTAAGTTTGGAGCCGTCCATGCCATCCCCCTTGAATCTGGTCTCGGGGT
TAAAATACTCGAGCGTTTGTTAGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig872:15620..18444+

>mRNA_L-elsbetiae_contig872.17746.1 ID=mRNA_L-elsbetiae_contig872.17746.1|Name=mRNA_L-elsbetiae_contig872.17746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig872:15620..18444+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCGCCTGAAGAAGATCAAGCACGACATGCAGAACCCGGCGCAGGC
CCTCAAGCGCAAGCTTCAGCCAGACGCCTACAAGGAGGCCAAGCGCAAGG
TCCACCAAGTGAAGAACCCCGGACAAGCCCTCAAGCGCAAGCTTCAGCCG
GACGCCTACAAAAGGGCCAAGCGCAGGCTGAAGAAGCTCTCCAAGCTCAA
GAAGATGATGGAGAGCGAGATGAAGCGCCTGAAGAAGATCAAGCACGACA
TGCAGAACCCGGCGCAGGCCCTCAAGCGCAAGCTTCAGCCAGACGCCTAC
AAGGAGGCCAAGCGCAAGGTCCACCAAGTGAAGAACCCCGGACAAGCCCT
CAAGCGCAAGCTTCAGCCGGACGCCTACAAAAGGGCCAAGCGCAGGCTGA
AGAAGCTCTCCAAGCTCAAGAAGATGATGGAGAGCGAGGTCAACTCGAAG
CCCCGGGGCATGATGCCCCCCGAAGGACACAGCGGGCCTCGTGACGGAGC
CGCCGTCGACAGCGACCACGGGGGGGGTGGGGGGGACTCGAGCTCGGACT
GCTCCAGCGTCAGCTCGGGGTCCGATTTGTCCGACTTGTCAGATCTGTCG
GACTTGTCCGATTCGGATTATTATGGCGGAGACAGCAGTGGCTCCAGCTA
AGTCAACTCGAAGCCCCGGGGCATGATGCCCCCCGAAGGACACAGCGGGC
CTCGTGACGGAGCCGCCGTCGACAGCGACCACGGGGGGGGTGGGGGGGAC
TCGAGCTCGGACTGCTCCAGCGTCAGCTCGGGGTCCGATTTGTCCGACTT
GTCAGATCTGTCGGACTTGTCCGATTCGGATTATTATGGCGGAGACAGCA
GTGGCTCCAGCTAA
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