mRNA_L-elsbetiae_contig871.17738.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig871.17738.1
Unique NamemRNA_L-elsbetiae_contig871.17738.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig871.17738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig871contigL-elsbetiae_contig871:30846..31569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size724
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig871.17738.1prot_L-elsbetiae_contig871.17738.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig871 30941..31324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816951.2467906-UTR-L-elsbetiae_contig871:30845..309401622816951.2467906-UTR-L-elsbetiae_contig871:30845..30940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig871 30846..30940 +
1691683936.1606975-UTR-L-elsbetiae_contig871:30845..309401691683936.1606975-UTR-L-elsbetiae_contig871:30845..30940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig871 30846..30940 +
1622816951.2723162-UTR-L-elsbetiae_contig871:31324..315691622816951.2723162-UTR-L-elsbetiae_contig871:31324..31569Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig871 31325..31569 +
1691683936.1859243-UTR-L-elsbetiae_contig871:31324..315691691683936.1859243-UTR-L-elsbetiae_contig871:31324..31569Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig871 31325..31569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816951.2618704-CDS-L-elsbetiae_contig871:30940..313241622816951.2618704-CDS-L-elsbetiae_contig871:30940..31324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig871 30941..31324 +
1691683936.1745496-CDS-L-elsbetiae_contig871:30940..313241691683936.1745496-CDS-L-elsbetiae_contig871:30940..31324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig871 30941..31324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig871.17738.1

>prot_L-elsbetiae_contig871.17738.1 ID=prot_L-elsbetiae_contig871.17738.1|Name=mRNA_L-elsbetiae_contig871.17738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MLNRLAQPISSKERVPGQVKGRDEEELCVFWCPSSSNLAELMIYLSWKGQ
GGEAVLPKELADAGLRAGPAVARANPKLLRWSLVVHVYLLRHRCCFRVGT
KFSACSSFTLNSDASSGGSPRRASLAI*
back to top

mRNA from alignment at L-elsbetiae_contig871:30846..31569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig871.17738.1 ID=mRNA_L-elsbetiae_contig871.17738.1|Name=mRNA_L-elsbetiae_contig871.17738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=724bp|location=Sequence derived from alignment at L-elsbetiae_contig871:30846..31569+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCTGGCGGCTAATTTAGCTTGAAAAACTTTGGGGCGTGGGTGGCCATT
TGGAGTGGAAGCGGCCGTTCGTTGTGTTTGGCGCAAAAAAAGCGGATGCT
AAATCGGCTCGCCCAACCGATTTCGTCGAAAGAGCGCGTGCCTGGCCAGG
TCAAGGGTAGAGATGAAGAAGAGTTATGCGTGTTCTGGTGTCCGTCTTCC
AGCAATTTAGCAGAGTTGATGATTTATTTGTCTTGGAAGGGGCAGGGAGG
TGAAGCTGTCCTTCCGAAAGAGTTGGCAGATGCTGGGTTGCGCGCGGGCC
CTGCAGTGGCCCGCGCCAACCCGAAGTTACTGCGTTGGTCTCTTGTCGTG
CACGTTTACTTACTGCGCCACAGGTGTTGTTTTCGAGTTGGTACAAAATT
CAGCGCATGTAGCTCCTTCACGCTCAACTCGGACGCCTCTAGCGGGGGGA
GTCCCCGGCGCGCGTCCTTGGCAATCTAGCCCGCCTCCTCCCATCCGCTG
TCCGCGAGTCACGCACGCGCGCGCCCGGTTTGTTGATTTATTCGTGTATT
TTTACCCGCGCATAAAGAGCAGACGCTGCGTCAGGGTTGTGAGAGTGCGC
GACAATATGGTGGTATTTAGGCACGGCCTCGGCTTTGACCCAGTCTGAGA
TCTCCACAAACATTTCAGAGGAGAGAGCTTTGGCATGTTTTCTATATTGT
GTATTCAGGGAGCGGGAGGCACGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig871:30846..31569+

>mRNA_L-elsbetiae_contig871.17738.1 ID=mRNA_L-elsbetiae_contig871.17738.1|Name=mRNA_L-elsbetiae_contig871.17738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig871:30846..31569+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTAAATCGGCTCGCCCAACCGATTTCGTCGAAAGAGCGCGTGCCTGG
CCAGGTCAAGGGTAGAGATGAAGAAGAGTTATGCGTGTTCTGGTGTCCGT
CTTCCAGCAATTTAGCAGAGTTGATGATTTATTTGTCTTGGAAGGGGCAG
GGAGGTGAAGCTGTCCTTCCGAAAGAGTTGGCAGATGCTGGGTTGCGCGC
GGGCCCTGCAGTGGCCCGCGCCAACCCGAAGTTACTGCGTTGGTCTCTTG
TCGTGCACGTTTACTTACTGCGCCACAGGTGTTGTTTTCGAGTTGGTACA
AAATTCAGCGCATGTAGCTCCTTCACGCTCAACTCGGACGCCTCTAGCGG
GGGGAGTCCCCGGCGCGCGTCCTTGGCAATCTAGATGCTAAATCGGCTCG
CCCAACCGATTTCGTCGAAAGAGCGCGTGCCTGGCCAGGTCAAGGGTAGA
GATGAAGAAGAGTTATGCGTGTTCTGGTGTCCGTCTTCCAGCAATTTAGC
AGAGTTGATGATTTATTTGTCTTGGAAGGGGCAGGGAGGTGAAGCTGTCC
TTCCGAAAGAGTTGGCAGATGCTGGGTTGCGCGCGGGCCCTGCAGTGGCC
CGCGCCAACCCGAAGTTACTGCGTTGGTCTCTTGTCGTGCACGTTTACTT
ACTGCGCCACAGGTGTTGTTTTCGAGTTGGTACAAAATTCAGCGCATGTA
GCTCCTTCACGCTCAACTCGGACGCCTCTAGCGGGGGGAGTCCCCGGCGC
GCGTCCTTGGCAATCTAG
back to top