mRNA_L-elsbetiae_contig8705.17732.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8705.17732.1
Unique NamemRNA_L-elsbetiae_contig8705.17732.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: D7FLQ8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ8_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 2.260e-69
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 2
Query:    2 PSMDLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSKE 361
            PSMDLAPKVNEVLSKTC +VCVEELSLQ DHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRG+ KPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVL+IIMRNMSKE
Sbjct: 2389 PSMDLAPKVNEVLSKTCARVCVEELSLQPDHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGEAKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLAIIMRNMSKE 2508          
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: A0A482SY26_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY26_9ARCH)

HSP 1 Score: 166 bits (420), Expect = 2.880e-45
Identity = 82/126 (65.08%), Postives = 98/126 (77.78%), Query Frame = 2
Query:    2 PSMDLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHN-------RGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSK 358
            PS+DL PK+N+ L K C  VC  +  L A+  F+ KV+Q+QELL+VRHSVM+LGPAGCGK+TVWKTL ACHN       +G  K  TV ETVNPK+VT+DELYGYMTL K+WKDGVLSI+MRNMSK
Sbjct:  232 PSLDLPPKLNQGLYKICADVCKIQ-GLGAEETFIAKVLQYQELLEVRHSVMLLGPAGCGKSTVWKTLAACHNHQQSASSKGAAKAVTVYETVNPKSVTTDELYGYMTLTKDWKDGVLSIVMRNMSK 356          
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: F0XZT7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZT7_AURAN)

HSP 1 Score: 159 bits (403), Expect = 5.700e-43
Identity = 79/120 (65.83%), Postives = 92/120 (76.67%), Query Frame = 2
Query:    2 PSMDLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSKE 361
            P +DL  KVNE L    ++VC +E  LQ +  F+ KVVQFQELLDVRHSVM+LGPAG GKTT++KTL  CHN  K K   V E +NPKAVTSDELYGYMTL+K+WKDG LSI+MRNM KE
Sbjct: 2200 PGLDLPTKVNEDLQALASRVCAKE-GLQGEDIFISKVVQFQELLDVRHSVMILGPAGAGKTTIYKTLAGCHNVDKPKAVCVYEAINPKAVTSDELYGYMTLSKDWKDGCLSIVMRNMCKE 2318          
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: D7FYT3_ECTSI (Dynein heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT3_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 9.300e-42
Identity = 78/117 (66.67%), Postives = 90/117 (76.92%), Query Frame = 2
Query:    8 MDLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSK 358
            +++A K++E L +    V  E   LQ D  FV+K VQFQELLDVRHSVM+LGPAGCGK+T+WKTL   HN  K K + V ETVNPKAVT DELYGYMTLAK+WKDGVLSIIMR MSK
Sbjct: 1982 LEVATKMDETLKQKVVSVSTE-WGLQIDDTFVLKTVQFQELLDVRHSVMLLGPAGCGKSTIWKTLAQTHNMNKPKKTCVVETVNPKAVTGDELYGYMTLAKDWKDGVLSIIMRGMSK 2097          
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: A0A2D4BRA7_PYTIN (Sporangia induced dynein heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BRA7_PYTIN)

HSP 1 Score: 153 bits (386), Expect = 1.110e-40
Identity = 77/117 (65.81%), Postives = 88/117 (75.21%), Query Frame = 2
Query:    8 MDLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSK 358
            +++APKVN  L + C  VC    +LQ D  FV+KV Q QEL+DVRHSVM+LGPAGC KTT W  L  C N GK K   V ET+NPKAVTSDELYGYMTL+K+WKDGVLSIIMR MSK
Sbjct: 1699 VEVAPKVNVSLREKCVTVCKAN-NLQHDDSFVLKVCQLQELIDVRHSVMLLGPAGCAKTTTWMALAKCWNLGKEKKICVYETLNPKAVTSDELYGYMTLSKDWKDGVLSIIMRGMSK 1814          
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: K3X373_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X373_GLOUD)

HSP 1 Score: 152 bits (385), Expect = 1.520e-40
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 2
Query:    8 MDLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSK 358
            +++APKVN  L +    VC +  +LQ D  F++KV Q QEL+DVRHSVM+LGPAGC KTT W+TL+ C N GK K   V ET+NPKAVTSDELYGYMTL+K+WKDGVLSIIMR MSK
Sbjct: 1990 VEVAPKVNVELREKTVAVC-KASNLQHDDSFILKVCQLQELIDVRHSVMLLGPAGCAKTTTWQTLVKCWNLGKEKKICVYETLNPKAVTSDELYGYMTLSKDWKDGVLSIIMRGMSK 2105          
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: F0W7Y1_9STRA (Dynein heavy chain putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7Y1_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.070e-40
Identity = 75/116 (64.66%), Postives = 89/116 (76.72%), Query Frame = 2
Query:   11 DLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSK 358
            ++ PKVN  L + C  VC ++ +LQ +  FV+KV Q QEL+DVRHSVM+LGPAGC KTT W+TL  C N  K K   V ET+NPKAVTSDELYGYMTL+K+WKDGVLSIIMR MSK
Sbjct: 2105 EVLPKVNATLKEKCVTVC-KQSNLQHEDSFVLKVCQLQELIDVRHSVMLLGPAGCAKTTTWQTLAKCWNLDKEKKVCVYETLNPKAVTSDELYGYMTLSKDWKDGVLSIIMRGMSK 2219          
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: A0A835YNN0_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN0_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.830e-40
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 2
Query:    8 MDLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSK 358
            +++  KVNE L   C +   + L  Q D  F+ K VQFQELLDVRHSVM+LGPAGC KTT+W+TL A HN  K K + V ETVNPK+V+ DELYGYMTL+K+WKDGVLSIIMR MSK
Sbjct: 2044 LEVPTKVNEALKAKCARAA-QTLGFQRDDTFLNKTVQFQELLDVRHSVMLLGPAGCAKTTIWRTLAAAHNLDKAKKTCVHETVNPKSVSGDELYGYMTLSKDWKDGVLSIIMRGMSK 2159          
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: A0A024GB38_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GB38_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.830e-40
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = 2
Query:   11 DLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSK 358
            ++ PKVN  L + C  VC +  +LQ +  FV+KV Q QEL+DVRHSVM+LGPAGC KTT W+TL  C N  K K   V ET+NPKAVTSDELYGYMTL+K+WKDGVLSIIMR MSK
Sbjct: 2108 EVLPKVNATLKEKCVTVCKQH-NLQHEDSFVLKVCQLQELIDVRHSVMLLGPAGCAKTTTWQTLAKCWNLDKEKKVCVYETLNPKAVTSDELYGYMTLSKDWKDGVLSIIMRGMSK 2222          
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Match: B8C065_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C065_THAPS)

HSP 1 Score: 150 bits (379), Expect = 9.780e-40
Identity = 77/112 (68.75%), Postives = 85/112 (75.89%), Query Frame = 2
Query:   23 KVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMVLGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLAKEWKDGVLSIIMRNMSK 358
            KV+E L     +V  +E  LQ D  FV K   FQELLDVRHSVM+LGPAGC KTT+WKTL   HN  K KP+ VAETVNPK+VT DELYGYMTLAK+WKDGVLSIIMR MSK
Sbjct: 2000 KVDEDLKAKIVRVA-KERGLQYDEMFVNKTCNFQELLDVRHSVMLLGPAGCAKTTIWKTLQGAHNLDKPKPTCVAETVNPKSVTGDELYGYMTLAKDWKDGVLSIIMRGMSK 2110          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8705.17732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLQ8_ECTSI2.260e-6995.00Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A482SY26_9ARCH2.880e-4565.08Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
F0XZT7_AURAN5.700e-4365.83Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D7FYT3_ECTSI9.300e-4266.67Dynein heavy chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A2D4BRA7_PYTIN1.110e-4065.81Sporangia induced dynein heavy chain n=2 Tax=Pythi... [more]
K3X373_GLOUD1.520e-4064.96Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0W7Y1_9STRA2.070e-4064.66Dynein heavy chain putative n=1 Tax=Albugo laibach... [more]
A0A835YNN0_9STRA2.830e-4063.25Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A024GB38_9STRA2.830e-4064.66Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
B8C065_THAPS9.780e-4068.75Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8705contigL-elsbetiae_contig8705:1383..5992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.2
Seed ortholog evalue1e-57
Seed eggNOG ortholog2880.D7FLQ8
Preferred nameODA-DHCB
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons4
Model size361
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8705.17732.1prot_L-elsbetiae_contig8705.17732.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8705 1390..5992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816951.001299-UTR-L-elsbetiae_contig8705:1382..13891622816951.001299-UTR-L-elsbetiae_contig8705:1382..1389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8705 1383..1389 +
1691683935.9445205-UTR-L-elsbetiae_contig8705:1382..13891691683935.9445205-UTR-L-elsbetiae_contig8705:1382..1389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8705 1383..1389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816951.0116165-CDS-L-elsbetiae_contig8705:1389..14071622816951.0116165-CDS-L-elsbetiae_contig8705:1389..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8705 1390..1407 +
1691683935.9612405-CDS-L-elsbetiae_contig8705:1389..14071691683935.9612405-CDS-L-elsbetiae_contig8705:1389..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8705 1390..1407 +
1622816951.0259533-CDS-L-elsbetiae_contig8705:2770..28921622816951.0259533-CDS-L-elsbetiae_contig8705:2770..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8705 2771..2892 +
1691683935.9812293-CDS-L-elsbetiae_contig8705:2770..28921691683935.9812293-CDS-L-elsbetiae_contig8705:2770..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8705 2771..2892 +
1622816951.0371253-CDS-L-elsbetiae_contig8705:4458..45761622816951.0371253-CDS-L-elsbetiae_contig8705:4458..4576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8705 4459..4576 +
1691683935.9986377-CDS-L-elsbetiae_contig8705:4458..45761691683935.9986377-CDS-L-elsbetiae_contig8705:4458..4576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8705 4459..4576 +
1622816951.0510552-CDS-L-elsbetiae_contig8705:5896..59921622816951.0510552-CDS-L-elsbetiae_contig8705:5896..5992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8705 5897..5992 +
1691683936.0095856-CDS-L-elsbetiae_contig8705:5896..59921691683936.0095856-CDS-L-elsbetiae_contig8705:5896..5992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8705 5897..5992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8705.17732.1

>prot_L-elsbetiae_contig8705.17732.1 ID=prot_L-elsbetiae_contig8705.17732.1|Name=mRNA_L-elsbetiae_contig8705.17732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MDLAPKVNEVLSKTCTQVCVEELSLQADHDFVVKVVQFQELLDVRHSVMV
LGPAGCGKTTVWKTLMACHNRGKGKPSTVAETVNPKAVTSDELYGYMTLA
KEWKDGVLSIIMRNMSKE
back to top

mRNA from alignment at L-elsbetiae_contig8705:1383..5992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8705.17732.1 ID=mRNA_L-elsbetiae_contig8705.17732.1|Name=mRNA_L-elsbetiae_contig8705.17732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4610bp|location=Sequence derived from alignment at L-elsbetiae_contig8705:1383..5992+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTCCATGGACCTAGCCCCCAAGGTGAATCAGTCATCAGTTATTAGCT CGTTCATTAGTTCGGGAAGAATTTGAGCCTTTTTCTAGAAAATAGAGACA CGGGGTTCTGTAGCCCTATCCTACCGCTGGCCCCGACCCGACGCGAAAAA TTGAGTTTTTTTCTAGAAAATAGGGACAAGCGTTCCATAGCCCTAGCCCT AACCCTAACCCCACCCCCTAGTCCCCCCCGCCTAGCCGTTCCCACACTTT GTGTCCCATATGAACGTAAAACACAGTCCATTCACGGTGCCCCCTCTCCC TGCCGCTTCGCTAATAGGCGCCTCATAGACCCCGGAAACCGCACAAGGGT TCGGCACCATCGTAGCCTGACCCCCCTGCGTATTCCAATTGTCAGTTGGC CTCCCCCGTCACCGCTCTCGCGAACCCCTCCTTTTTGGCGTTTGTTTGTT TTGCGCACGTGCGTGGCTTCGCGGTGAACCTAAGGGCGGGGTGAGGGTTG GTATGTCTACAATTGACCCGCCTGGAATCAATCTCTTCGTAATTTACCGT ATATGACGTAAGATAAGACATCCCCTGGACCGATTTTCAAAGCTCAAGTA CTCCACAGCAAGCAGAGCGTCAGTCTCGAAAAGGGCGGCGTTGGAAAGGT CTCGCCGAGAGCTTTCCGAAAATGTGGCGTTTGTGGTTAGAATCGTATTC GTTGCGGAGTAACCAAGCTCTCAATATCGGTCCAGGGGGTGTCTTATCCT ATATCACCTACGGTATACATGGTACACTTGGTATATGATGACGTTTTGCT GATATGCCGAAACGGTCTCCAGTAAACTGCGTCGAAGTGTCCTCCTACCG CCGAACGCCCGACCCCACCCCAGTAGCCTTCGCGCAGGTTTTACTGGAAG AATCACACGGGACAAAAGCATGAAACGGCTTATAGGGGGTTGGTTTGGGG TTAGGGCTAGGGTAAGCGTTGGGGTTACGGAACCCCTGTCTATTATCCCT GCTCGTAGACAGGAATTCTTCGCGAAGAACAAAAGTGGAAGTTCTTACAA GTCACAGGCGAGAAAGAACTAGATTTTATTGGGGCACGAGAGAGTGTGTA ACTGTAATTAGAGTACCTCAAGTACCACAAAGAGTACGGGGCACCCAGGT GTGTTAAGGGCCCGAAGGTAGGTACCCATTCCGTTTGTTCTTGCCCATAG CTGCGTTCGCATTGTGTCGCGAGAGCTCATAAGGAGCACACGGATACAAG ACAAGCGAGAGGACAACACGGCTGACGCAGCGCGACGATTGCCTCGGCTG CTGCTATTTAGTGTTGGAACTTTTATTTATTTATTATTATCTTCGCGAAG GCGGTCCATTAAACAAAAAATCTGAATCTTTTCAAAAGGTCAACGAGGTG CTGTCCAAGACCTGCACCCAGGTGTGCGTCGAGGAGCTGTCACTGCAGGC CGATCACGACTTCGTCGTCAAGGTCGTGCAGTTCCAAGAGCTCCTGGACG TCCGCCACAGGTAAAAAGACGGGCCCATAACAATCGTGGCACGGGTGAGT TATCCTGTGACCACGGGGATCGACCGCGTGAGTGTTGGGTTTGTATGGAT TAAGTGGAGGTGTGCTGGATAGAGAGATCGGAACGGTTTTAAATGTGAGG ACAACACATGTATAACATAGCAGTATATCGGTATACGTCATGTCATTTGT TTTCTTTCGATGGGCTCCCTGCCAAGAGTACTGAACCGTGGTCACACATA CAGAAGGGATCCTTTCCCCGAGGCCCCCCACTCCTCCCTTCTGCGGTCGG TGCTTGCCCCCTTAAGATTTTTAATGGATGTATACTGTTGTAGACAGTCC CGTTGACAGTCCCGTTGACAGTCCCGTTGACAGTCCCCACTCCCCCCCTT CTGCGGTGCTTGCCTAAGAGTTTTGTCGCGGGAAGGGTTCAGGCGCCCAT TCCCTCGTCGACGGTGAGGTCGAAGTTACATCCAAGGTTTATGCCATGTG TGTCACCAAAACATCTCCGAAGATACATACGTATCGGCGGGTACATGATG ACCCCCCCCGTCTTATCCCCGTTGCGGAGAAACTGGTCCAGGACAGAAAC CATCGACCTAACGGGGTCTTGTTCTGGATCATGTTTATATGCCGATTTCT CCGTGAAGCCCCGAAATATCACTACTTGGAAACTATTAAGTAATTTTTAA TCGTTTGTCTGCCAGAAGGTCTTGACGGTCTACCGTAGGTGACACAAGAT ACCGCACCCCGTGGACCGCATTATAGACCTCCATTATTCCGTAACGAAGA GGGTTTCAGTGTCGGAAGGGGTGGCGTTGGAAAGATCTAGTCGAGTGCCG TTCGAAAATCTGTCGTTTGGTGCTGGCGCCGTCTTCGTTACGGAGTAATG GAGCTCTAAAATCCGGTCCAGGGGGTGTGATATCTTGTATCACCTACTGT ATTCCCAGTCCAAATTCCAATATAGCGGTGCAAACGTTTTAAATTGAGCC AGGGGGGGGGGGGGGGGGGGGGGGACACCCGGGGGCGGCGGCCCCCCGCC CCGACCCCCCGTCAACAGCCCGGTGGGGGGGGGGGGCCGTGGGTGGTCGC CCNNNNNNNNNNCGTGGTTGGGGGTGTTTTATTTTTATCCTCCTCTTTAT CCTCCCCTCTAACAACAAGAGGTGGGGTGGAACTGTTTGCATGGGGGGGG GGGGGGGGGGGGGGGGGGGGGTATCACCGCGGCAGCATGGCCCCGTCACC GATCGCCTGTCTACAGGCCGTACTGCGAGGGGCGCCGTGTCTGTCGACCC TTCGGCTGCTGGGGGTGGTGTGCGAACGAAGCCCCTCATGCACCGTCAAA AAGTGAACTTAATATAAACTTGTCGAGCAACTTGCTATTTAGGCTTAACC TCGGTAGGCGCTTTTGTTTCACGTTTTACGTGCGTACACCTTTTTCTCTA CACTTACAACCAGTACAATATGGACTTTTGTTCCTCCGCAACTTCGCAAG AAGCATACCGAGCTCAAGCCTAAAGTAAATACATGAATACGAGCAACACG CCTGCTTTATTCTGCCTTTTCCGCAGCGTCATGGTCCTCGGGCCTGCCGG ATGCGGCAAGACGACGGTGTGGAAAACCCTGATGGCGTGCCACAACCGGG GAAAGGGCAAGCCGTCAACCGTCGCTGAAACGGTCAACCCCAAGGTAACT GTGTAACGTAACGCACGCCTTTAAGGCGCGGGGGGGGGGTGGCCCGCCTG ACGCCGTTGCAGGCGGCTGCCCTGCCGAAGAAGCAGGTGGCTGCTGCGGG GCGTCGGTAGTGTCGGGCCCTCCACGTACGTCTCAGTCCGTTTCAGGGCT AGCGATTTTTGTGTTTTTTGTTTTTCTTCTCCACATTTATTTCCAAGTGC TCGATGGGCTCCCTGCCACGAGGCTTGAATCTCGCTAGAGTGCCGAACCG TGGTCATACAGAAGGGATCCTTTCCCCCGGAGGCCCCCGCCTCCCCCCTT CTGCGTTGCTTGCTTAAGATTTTCGTCGCGGCAAGGGTTCAGCCGTGGGC GTGCGGAATAGCGCGCTGGAACAAGCGTTAGAGCGTCCGCACTTTGACCC TTGTCATCGCGATCACCCGCCAACTTTGAAGACTCGGGCACCCTTTCTCT TGTCGTCACTCCCAATAACCAGCAAATAGAAGCAAATGGAGCAACCCCCC CCCCCTCGCGCCGCCAAGACTGTGAAGAACGTGACTCTTCACCGGCAGAC ATCGCGACGGCGTAGACGTGCCCTCCTCATTCCTTATTTTTCCCTTACCT CCTAGTTGCTGTTGTTGTTGCTGTTGTTGCTGTTGTTGCTACTGCTGTTG TTGTTGTTGTTGTTGTTGTTTCTTCACATTAAATACCGTTCCGATCTCCC CACCCAGTGCCTCCCTATGCCGGTACTACTGCAACACTTGATGCGGTCGA TTCCCGTGGTCACAGGCTAACTTATACCTAAACACGGCATCATACTCCGA GTATTGTGTTTTCCTCTTCACATCTACTGCCAGCACTAGAGGCTCCTTGC CACGAAGGAGATTTTGGTACAATATTGTTGCTGTCTTCATATTAAACAAC CGTTCCGATCTCTCTCTATCCAGTACACCTCCATGAGTCCGTGTACTAAT CCAACACTGACGCGGTCAATTCCCGTGGTCACAGGATAACTTACCCTCCA AGGGTATATATAGACTACTGAAAAATAAAAATAAAATAAAATGGACCCGA GGGGCCCACAAAGCACAAAACAAAAGATCAGATACATATAGTCTGGAGCC TTCCGCTCCCCTCTACATGTGTGTGTGTGTGTGTGTGTGTTTCCCATTTA ATTTGGCGCCAGTCCCCCCAAGTGGAGACGTGTACTACAGCTTGCGGTGT ACTTTAAGGTACTACACTTTGCAGTGCATTACATGCGAACATAAAATGGA CCCGAAGGGTCAGTCAGAAAAGCGATGATAGTCTATGGTGCGCACCTTAT CCGCTTGGTTCTAGGCGGTCACGTCCGACGAGCTGTACGGCTACATGACG CTGGCCAAGGAGTGGAAGGACGGGGTGTTATCCATCATCATGAGGAACAT GAGCAAGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8705:1383..5992+

>mRNA_L-elsbetiae_contig8705.17732.1 ID=mRNA_L-elsbetiae_contig8705.17732.1|Name=mRNA_L-elsbetiae_contig8705.17732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig8705:1383..5992+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCTAGCCCCCAAGATGGACCTAGCCCCCAAGGTCAACGAGGTGCT
GTCCAAGACCTGCACCCAGGTGTGCGTCGAGGAGCTGTCACTGCAGGCCG
ATCACGACTTCGTCGTCAAGGTCGTGCAGTTCCAAGAGCTCCTGGACGTC
CGCCACAGGTCAACGAGGTGCTGTCCAAGACCTGCACCCAGGTGTGCGTC
GAGGAGCTGTCACTGCAGGCCGATCACGACTTCGTCGTCAAGGTCGTGCA
GTTCCAAGAGCTCCTGGACGTCCGCCACAGCGTCATGGTCCTCGGGCCTG
CCGGATGCGGCAAGACGACGGTGTGGAAAACCCTGATGGCGTGCCACAAC
CGGGGAAAGGGCAAGCCGTCAACCGTCGCTGAAACGGTCAACCCCAAGCG
TCATGGTCCTCGGGCCTGCCGGATGCGGCAAGACGACGGTGTGGAAAACC
CTGATGGCGTGCCACAACCGGGGAAAGGGCAAGCCGTCAACCGTCGCTGA
AACGGTCAACCCCAAGGCGGTCACGTCCGACGAGCTGTACGGCTACATGA
CGCTGGCCAAGGAGTGGAAGGACGGGGTGTTATCCATCATCATGAGGAAC
ATGAGCAAGGAGGCGGTCACGTCCGACGAGCTGTACGGCTACATGACGCT
GGCCAAGGAGTGGAAGGACGGGGTGTTATCCATCATCATGAGGAACATGA
GCAAGGAG
back to top