mRNA_L-elsbetiae_contig87.17725.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig87.17725.1 vs. uniprot
Match: D8LIW6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW6_ECTSI) HSP 1 Score: 1243 bits (3217), Expect = 0.000e+0 Identity = 770/1231 (62.55%), Postives = 882/1231 (71.65%), Query Frame = 1 Query: 1 GADDETGAI-RELNGLRLVFANIAGYNKFVGLRSILKLPEVKVQVTEGDLCVEDLESAWLEACAVKGVTAVDPKDSDGATYHVHDRTSWGICTELSFEGFVHFLRLCEARASLPSDVAAATEAPPKDGKTGHDLVAARHRMIGLLRATLTVHQRGGGXXXEEKDHPKDSNAQLGETLHLSMVRAAVEDGLAQHTPETLHELMRTGVYKESDVEMKLDRQEKKASLRVGLLSRKFSRDELIHAGI-LQDKTPGQLAGERADTAGRVRRHLQHRSAGSAADLLAADGKVSG--------RGQHLRNPSLDDLKAQGIYRTLEETQEEQKQHKLAGDFLQQELEHRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESAFRRLEQEKGGPITKVQDLLEWTIIASAIKEGVVSYCTLPVLEKTFIAAMEPPSSGSGSVS----SSQHMEYEQFDKFLSSTQTTQVEDEPYSLKLWALMRMRPDVEEQEHQEGNHRRVT*NALMAHNLEQELGKREPRERLANKGIYLERTPAETAVERAHLXXXXXXXXXXXXXXXXXXXXXXXXXGVQPNDLEQAHRNARNFLEGTLSRRPALNTLQEKGFLEADELEEAFTELVLEYKHGDSATSTTAAADPGSTDGSCSS-SRLLLPASRLAAWTPVQKMVGSGAAMEEDVAAAMDKATKASFHDHXXXXXXXGGGLQDNDDSGALEGHMVDFVGFLEFIHSLDIEVDGL--HIGSGKADDHDDNDPEAAARHARRLQMRRERAAHAAEEDSYGTLKEHLIAHLRARPGKHDPETQRIAKEFHSTEAVDLEKKLVKTXXXXXXXXXXXEGFPAKLTLASGAGGERAARIKELELAMNKRMLKHRLIGGGGTHR-GTAGGGDGRGVGIMGMDISAKMEVVGAGLDRRASLEELTNQGIFQRTTPVQHSLKRHLIEKRLDRSLRNPARPSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLERRETLQEIKDHGIYQPENSVHAAAHEKLLLKALLQRKLTHAFSKEELGRLKQKGVYKEAEHEKLEAERLLVTRQLGALMNKRPAPDQLEQEHPGLMEAGTLALVFEERVMPRAATGDGADAAAAAAAGTSDK-GAIVCGDGGGAAEADPESDGGPEHLVSFEALMSWPDVQEHLVGEGGEDTKHEMARHFELCDSDGDGYLTFSQFLRWVELCDLNPEDHLQV 3636 G DD A+ RELN LRLVFANIAGY KFVGLRS+LKL EVK Q+ EGD+ VEDLESAWLEACAVKGV++VDP+D G T+HVH R+SWG+CTELSFEGFVHFLRLCE +ASL +D+A ATEA PKD TG DLVAARHRM+GLLRATLTVHQRGGG EE +HP D NA LGETLH SMVRAAVE+GLA H P+ LHELMRTGVYKES+ ++LDR EKKASLR GLL RKFS +L+ +GI L+++TPGQLAGERA A RV RHLQ RSAG G+ G +GQH R+PSLD+LKA+GIYRT E+ E++KQH+LA FL+Q L HRA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+SAF LE+E+GGPI V D+L+W ++A+A+KEG V + V++ F AM+ P Q M YE+FDKFLSS +TTQVE+EP SLKLWALMRMRP++E+QEH EGN RR NAL+A LE+ELGKREP ERLANKGIYLE+TP E AVERAHL GV P++LE+AHR+ARN+LEGTLS RP ++TLQ+KG+LEADELEEAFTELVLEYKH +AT+ S + C S SRLLLP SRLA W PV+KM+ SG AMEEDVAAA KA KASFH XXXX QD D+ M+DFVGFLEFIH+LDI VDGL +GK DDHDDNDPEAAA HARRL+MRR+RA AAEEDSYGTLKEHL+AHLRARP K DPETQRIAKEFHSTEAVDLEK L+K E A T S GGER ARIKELELAMN+RM+KH L GG R G AG G G+D+ E +G L RR+SLEELTNQGIFQRTTP+QH L+R LIEKRL RSLRNP RPSKK GLERRE++Q++KDHG+YQPENS+ AA HEKLL+KALLQRKL+HAFS+EE+ R TRQL L++KRP P QLEQEHP LM+AGTLALVFEERVMPRAA G +K G +V ES GGPEHLVSF+ L++WPDVQ+HLVGEGGEDTKHEMARHF+LCDSDGDGY+TFSQFLRWVELCDL+P+DHLQV Sbjct: 10 GGDDIAAAVARELNDLRLVFANIAGYKKFVGLRSVLKLKEVKAQIAEGDVYVEDLESAWLEACAVKGVSSVDPEDGKGGTHHVHQRSSWGVCTELSFEGFVHFLRLCEEKASLSTDLATATEASPKDPATGRDLVAARHRMVGLLRATLTVHQRGGGGEEEEIEHPADLNAPLGETLHSSMVRAAVEEGLAHHNPDVLHELMRTGVYKESEEGVQLDRDEKKASLRHGLLDRKFSHHDLVRSGIILKEQTPGQLAGERALAASRVSRHLQQRSAGQCRGFSPCRGQKRGFYCCGEKTKGQHRRHPSLDELKARGIYRTPEQLVEDEKQHRLARAFLEQGLGHRANISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLEASQLKSAFETLEKEQGGPIKTVDDVLKWPLVATAVKEG-VRKVRMSVVKDAFAMAMKTPXXXXXXXXXXXXERQQMSYEEFDKFLSSAETTQVEEEPCSLKLWALMRMRPELEDQEHHEGNRRR---NALIARGLEEELGKREPLERLANKGIYLEKTPTEGAVERAHLTHTLAHGLAHRPALAELSHKGVYLDGVAPDELEKAHRDARNYLEGTLSLRPTIDTLQDKGYLEADELEEAFTELVLEYKHDATATA--------SRENDCGSGSRLLLPGSRLADWAPVRKMLRSGTAMEEDVAAATAKAQKASFHRRGQHXXXXXXXGQDGKDAA-----MIDFVGFLEFIHTLDIAVDGLGADASAGKTDDHDDNDPEAAANHARRLEMRRKRATDAAEEDSYGTLKEHLLAHLRARPKKDDPETQRIAKEFHSTEAVDLEKSLLKNRLEGHLRSRAAESAAA--TSGSSKGGERTARIKELELAMNQRMMKHSLAASGGDERSGGAGVGSAPSTAEEGLDMEVAREALGGSLGRRSSLEELTNQGIFQRTTPLQHGLERQLIEKRLSRSLRNPLRPSKKDLVEHGIYIDATPRELQMEHYLATRNLKHGLERRESIQDLKDHGVYQPENSLRAA-HEKLLIKALLQRKLSHAFSREEMDRXXXXXXXXXXXXXXXXXXXXXXTRQLARLVSKRPDPAQLEQEHPELMKAGTLALVFEERVMPRAAAGSXXXXXXXXXXEAGEKEGEVVA-----------ESGGGPEHLVSFDGLLTWPDVQDHLVGEGGEDTKHEMARHFDLCDSDGDGYITFSQFLRWVELCDLDPDDHLQV 1209
BLAST of mRNA_L-elsbetiae_contig87.17725.1 vs. uniprot
Match: A0A6H5L5E6_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E6_9PHAE) HSP 1 Score: 761 bits (1965), Expect = 3.310e-255 Identity = 457/788 (57.99%), Postives = 519/788 (65.86%), Query Frame = 1 Query: 1288 LPVLEKTFIAAME-PPSSGSGSVSSSQHMEYEQFDKFLSSTQTTQVEDEPYSLKLWALMRMRPDVEEQEHQEGNHRRVT*NALMAHNLEQELGKREPRERLANKGIYLERTPAETAVERAHLXXXXXXXXXXXXXXXXXXXXXXXXXGVQPNDLEQAHRNARNFLEGTLSRRPALNTLQEKGFLEADELEEAFTELVLEYKHGDSATSTTAAADPGSTDGSCSS-SRLLLPASRLAAWTPVQKMVGSGAAMEEDVAAAMDKATKASFHDHXXXXXXXGGGLQDNDDSGALEGHMVDFVGFLEFIHSLDIEVDGL--HIGSGKADDHDDNDPEAAARHARRLQMRRERAAHAAEEDSYGTLKEHLIAHLRARPGKHDPETQRIAKEFHSTEAVDLEKKLVKTXXXXXXXXXXXEGFPAKLTLASGAGGERAARIKELELAMNKRMLKHRLIGGGGTHR-GTAGGGDGRGVGIMGMDISAKMEVVGAGLDRRASLEELTNQGIFQRTTPVQHSLKRHLIEKRLDRSLRNPARPSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLERRETLQEIKDHGIYQPENSVHAAAHEKLLLKALLQRKLTHAFSKEELGRLKQKGVYKEAEHEKLEAERLLVTRQLGALMNKRPAPDQLEQEHPGLMEAGTLALVFEERVMPRAATGDGADAAAAAAAGTSDK-GAIVCGDGGGAAEADPESDGGPEHLVSFEALMSWPDVQEHLVGEGGEDTKHEMARHFELCDSDGDGYLTFSQFLRWVELCDLNPEDHLQ 3633 +P+L+ F AM+ P G G +HM YE+FDKFLSS +TTQVEDEPYSLKLWALMRMRPD+E+QEH EGN RR NAL+A LE+ELGKREP ERLANKGIYLE+TP E AVERAHL GV P++LE+AHR+ARN+LEGTLS AFTELVLEYKH TAAA ST+ C S SRLLLPASRLA W PV+KM+ SG AMEEDVAAA KA KASFH GGG QD D+ M+DFVGFLEFIH+LDI VDGL GK DDHDDNDPEAAA+HARRL+MRR+RA HAAEEDSYGTLKEHL+AHL+ARP K DPETQRIAKEFHSTEAVDLEK L+K E + GGER ARIKELELAMN+RMLKH L GG R G AG G G+D+ E +G L RR+SLEELTNQGIFQRTTP+QH L+R LIE+RL RSLRNP RPSKK GLERRE++Q++KDHG+YQ ENS+ +AAHEKLL+KALLQRKL+HAFS+E TRQL L++KRP P QLEQEHP LM+AGTLALVFEERVMPRAA G A +K G +V ES+GGPEHLVSF+ L++WPDVQ+HL GEGGEDTKHEMARHF+LCDSDGDGY+TFSQFLRWVELCDL+P+DHLQ Sbjct: 1 MPILKDAFAMAMKIPDGEGGGGGDEREHMRYEEFDKFLSSAKTTQVEDEPYSLKLWALMRMRPDLEDQEHHEGNRRR---NALIARELEEELGKREPLERLANKGIYLEKTPTEGAVERAHLTHTLAHGLAHRPALAELSHKG----GVAPDELEKAHRDARNYLEGTLSLXXXXXXXXXXXXXXXXXXXXAFTELVLEYKHD-----ATAAA---STEDDCGSGSRLLLPASRLADWAPVRKMLRSGTAMEEDVAAATAKAQKASFHRRGQHVQAAGGGGQDGKDAA-----MIDFVGFLEFIHTLDIAVDGLGAEASVGKTDDHDDNDPEAAAKHARRLEMRRKRATHAAEEDSYGTLKEHLLAHLKARPKKDDPETQRIAKEFHSTEAVDLEKSLLKNRLEGHLRSRAAES-----AVGRSKGGERTARIKELELAMNQRMLKHSLAASGGDERRGGAGVGSAAATAEEGLDMEVTREALGGSLGRRSSLEELTNQGIFQRTTPLQHGLERQLIEQRLSRSLRNPLRPSKKDLVEHGIYIDATPRELQMEHYLATRNLKHGLERRESIQDLKDHGVYQAENSL-SAAHEKLLIKALLQRKLSHAFSREXXXXXXXXXXXXXXXXXXXXXXXXXXTRQLARLVSKRPDPAQLEQEHPELMKAGTLALVFEERVMPRAAAGSXXXXXXXTVAEAGEKEGEVVA-----------ESEGGPEHLVSFDGLLTWPDVQDHLAGEGGEDTKHEMARHFDLCDSDGDGYITFSQFLRWVELCDLDPDDHLQ 751
BLAST of mRNA_L-elsbetiae_contig87.17725.1 vs. uniprot
Match: A0A6H5L494_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L494_9PHAE) HSP 1 Score: 186 bits (471), Expect = 1.810e-50 Identity = 100/146 (68.49%), Postives = 113/146 (77.40%), Query Frame = 1 Query: 418 MIGLLRATLTVHQRGGGXXXEEKDHPKDSNAQLGETLHLSMVRAAVEDGLAQHTPETLHELMRTGVYKESDVEMKLDRQEKKASLRVGLLSRKFSRDELIHAGI-LQDKTPGQLAGERADTAGRVRRHLQHRSAGSAADLLAADGK 852 M+GLLRATLTVHQRGGG EE +HP D NA LGETLH SMVRAAVE+GLA H LHELMRTGVYKE ++LDR EKKA LR GLL RKFS +L+ +GI L+++TPGQLAGER A RV RHLQ RSAGSAADL+ A G+ Sbjct: 1 MVGLLRATLTVHQRGGGGEEEENEHPADRNAPLGETLHTSMVRAAVEEGLAHHNTVMLHELMRTGVYKEPGDGVQLDRDEKKACLRHGLLDRKFSHHDLVRSGIILEEQTPGQLAGERTLAASRVSRHLQQRSAGSAADLVLAAGR 146
BLAST of mRNA_L-elsbetiae_contig87.17725.1 vs. uniprot
Match: A0A835YKI0_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKI0_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.070e-8 Identity = 75/287 (26.13%), Postives = 112/287 (39.02%), Query Frame = 1 Query: 2959 RGLERRETLQEIKDHGIYQPENSVHAAAHEKLLLKALLQRKLTHAFSKEELGRLKQKGVYKEAEHEKLEAERLLVTRQLGALMNKRPAPDQLEQEHPGLM--------------EAGTLALVFEERVMPRAATGDGADAAAAAAAGTSDKGAIVCGDGGGAAEADPESDGGPEHLVSFEALMSWPDVQEHL--------------VGEGGEDT---------KHEMAR---------HFELCDS----------------DGDGYLTFSQFLRWVELCDLNPEDHLQ 3633 RGL R L++++ GIY + + AAHE+LL AL+ R L+ F+ E +L AE ++ QL LM RP + L++EHP ++ EA LAL F++R+ + P++ +SFEAL WP ++E L G D+ +AR F+ CD+ D DG +TFS+FLR+VELCD+NPE H++ Sbjct: 1353 RGLLNRPDLEDLRAQGIYL-DTTATQAAHERLLKGALIARGLSKHFNXXXXXXXXXXXXXXEQGGSRLRAEHSIIAAQLSRLMRARPDVEALQEEHPHILXXXXXXXXXXXXXXEANELALAFQDRL------------------------------------SSPDA-----QTLSFEALRDWPALREALKEADLMHPEXXXXXXXMGSFDSCVTRLLAPRSRTLARATRKCYREGSFDACDAPVRACAPXXXXXXXXADADGAITFSEFLRFVELCDINPEAHIE 1597 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig87.17725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig87.17725.1 >prot_L-elsbetiae_contig87.17725.1 ID=prot_L-elsbetiae_contig87.17725.1|Name=mRNA_L-elsbetiae_contig87.17725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=701bp MAHNLEQELGKREPRERLANKGIYLERTPAETAVERAHLAHTLKHGLTHRback to top mRNA from alignment at L-elsbetiae_contig87:982..17776- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig87.17725.1 ID=mRNA_L-elsbetiae_contig87.17725.1|Name=mRNA_L-elsbetiae_contig87.17725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=16795bp|location=Sequence derived from alignment at L-elsbetiae_contig87:982..17776- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig87:982..17776- >mRNA_L-elsbetiae_contig87.17725.1 ID=mRNA_L-elsbetiae_contig87.17725.1|Name=mRNA_L-elsbetiae_contig87.17725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4206bp|location=Sequence derived from alignment at L-elsbetiae_contig87:982..17776- (Laminarionema elsbetiae ELsaHSoW15)back to top |