mRNA_L-elsbetiae_contig8682.17710.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8682.17710.1
Unique NamemRNA_L-elsbetiae_contig8682.17710.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8682.17710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8682contigL-elsbetiae_contig8682:1256..3633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002380.1
Exons2
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816948.3355262-CDS-L-elsbetiae_contig8682:1255..16331622816948.3355262-CDS-L-elsbetiae_contig8682:1255..1633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8682 1256..1633 -
1691683933.792019-CDS-L-elsbetiae_contig8682:1255..16331691683933.792019-CDS-L-elsbetiae_contig8682:1255..1633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8682 1256..1633 -
1622816948.3488367-CDS-L-elsbetiae_contig8682:3534..36331622816948.3488367-CDS-L-elsbetiae_contig8682:3534..3633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8682 3535..3633 -
1691683933.8031895-CDS-L-elsbetiae_contig8682:3534..36331691683933.8031895-CDS-L-elsbetiae_contig8682:3534..3633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8682 3535..3633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8682.17710.1prot_L-elsbetiae_contig8682.17710.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8682 1256..3633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8682.17710.1

>prot_L-elsbetiae_contig8682.17710.1 ID=prot_L-elsbetiae_contig8682.17710.1|Name=mRNA_L-elsbetiae_contig8682.17710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
SFFKKLVDKTKRGLGKVRKGLSPNKDRAVGDSENPLAEGVGVVLDAIDEL
VAEGEATASKAAGDVKEVVDKTKDSVKDAMAASKDKLNAASADVQATVDA
ALEGAAAEVDAMKEGIKGLGDQVHAAAKESADSAAAASKEAQETAEKEAA
EAAEAAAEV
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mRNA from alignment at L-elsbetiae_contig8682:1256..3633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8682.17710.1 ID=mRNA_L-elsbetiae_contig8682.17710.1|Name=mRNA_L-elsbetiae_contig8682.17710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2378bp|location=Sequence derived from alignment at L-elsbetiae_contig8682:1256..3633- (Laminarionema elsbetiae ELsaHSoW15)
AGCTTTTTCAAGAAGCTAGTTGACAAGACCAAGAGGGGCCTGGGTAAAGT
GCGCAAGGGCCTTTCTCCGAACAAGGACAGGGCGGTGGGCGATTCGGAGG
TGAGGTCGATGTATCATGGTGATATCTTGTACTCTGGTAGTTGCCGACTC
CTAATGTGCGTTGGTCCTGTGACTGCTTTGAGTCGGGTCCACGCTTGAGG
TGCTAAAAATAGCTTCTCCATCGCACTGCCCGCAATTTTGGATCAAAGTG
TTTTTGATAAAAATCTTTGCAGGGGAGATGTTGAATTCTTCTGATATTTA
GGTTGTTTTTTCTGCTCGGTTCGCCAAATATTACGTCTCTGTATGGAATA
CCGTTTGAACCCCATATCGAGTCTTTGCTCTAGTATGGGTTAGGTTCCAT
CTTTGATTCTTTGTTTTATTTTATAAAGATCGGATAGTGAAAGTCACGCT
CCGGCCTTCCAGCACAATCGGTGCCTGACGCTAGGGGGAAACTACCCCAG
AACACCCCCCCCCATGTCTCTCCGAAACGGCCCGAAGCGCTGCGAACGTT
GCGAAGTTGTTTGGTCCGTCATCTACATACCCGAGTTCCAGCCTGCTTGA
GATAAGCCTGCTTGAGATACGCATTTTGCCTTATTCAGGAGGGAGGGCTG
ATGAATTTTTGGTAGGGTATTTGGTGTGCGAGGGCCTTGCCCTTTTTTGT
TCCCGTGGTGCCTAAGGGGGTTAGAAGATGTTATCATTGTTAGGCTGATC
TGTGCTGGCGGGGAGGACACACAGCAGTAGAGAGACGACAGTATGACAAC
AGGCGTAAGTGTGGTGGGACATTTTGCACGTTATCCTTCAAATCTGATTT
TGGCTCTTCAGGAAGCAAGGCAACCTATATTTTCCGACTATTTATGCAGG
AGTGATATACCGATTTGTGACTCTGCGGTATCGAACTAAATAGATACACC
AAGGATCGTAGAAGGTGGCGTCACCAGCGGAGCATCCAAAAATGTAGGGA
GACATAGTGTCATGTCGGGCCAACAAACACCCCGCTGGAGACTCAACTCT
TCTGACGCAACGTGCTGACATAGAAGCGAGAAGCGGGGAGGCTTCGCCCC
CTTCGTGCTGCACGCGTTGTTTTGTTGTAAGACCCATCTCACGCAAGAAC
CGCCTGCCCCTGTAGATAAAAACTATCACGACTTGGGCTACCGTCTTTGG
AGAGAAGCCTAAGTATTAGTGTTGGATATCGTATCGAAAATTACGGTATA
TCAGATCGCAGTATCGTATCATCAATTTTGTCCCGGGGTTTAGGGCCTTA
TGATACGATACGATAATTCGATAAAACCGCCCACGAAACCCCCTGGTATG
CATTTTGTACTCACGAAACCCCAGCGGCGTGCTGTACTGTTGCGCTGCGG
GAACACAAACGGTACGCACGCGCACACCCACAGCATACACGCTAGTTGCA
GCAGCTCGGAAGCCACGTAGCACCAGGTAGTTGTTTTCCGAGGCACAGGT
TGACAATAAACGCTCAAATGAAACAACTTTCTCATTTCTCAATGCCGCAT
TTTTAATTTTGCCCACACATCTACTATCAACAGAAAATATGGCTGAAAGA
TGGCCGAAGATGGCCTGGATTATTGGCCCATTCGACGTCATTTTGATGAA
AAAAAAAAAAACCCCCCCCCTTTTTTTGGCCCCCGGGGGGCCCCTCGGGG
GGCCCCCCCCCCCCGGGGGGGGGGGGGGGGGGGGGGCGAAGGTGGCTCGC
ACAGCAAGCTTCAAGCGCATTCGCGCCTCAGCTCGCCTGTGCTCGCCTAA
ACGATAAGTATCGTTATCGGCCGCTTCGCGCTCGATCTCGTATGGAAGCG
CGCTACATACATAAGTGCTCGTATTGGGTACTTCGTTTATATAACCCCCC
GCCGCCTTGCGGCACTAAATTTATGCAAATAGGTATATACATGGTAAATA
TCAACTGAGAAGTGTCTCCCCATGCCTCTGGTCCGTTTTTGGTTCTGAAG
AACCCGCTGGCAGAAGGTGTCGGTGTGGTGCTGGACGCAATCGACGAGTT
GGTAGCGGAGGGAGAGGCAACCGCCAGCAAAGCTGCTGGGGACGTGAAGG
AGGTGGTCGATAAGACGAAGGACTCGGTCAAGGACGCAATGGCGGCGTCC
AAGGATAAGCTGAACGCTGCGAGTGCGGACGTGCAAGCGACGGTGGACGC
TGCTCTTGAGGGTGCTGCAGCTGAGGTAGATGCAATGAAGGAAGGCATCA
AGGGGCTTGGAGACCAGGTCCACGCAGCTGCGAAGGAGTCCGCCGACTCC
GCCGCAGCGGCGTCGAAAGAGGCTCAAGAAACCGCGGAGAAGGAGGCCGC
GGAAGCGGCCGAGGCCGCCGCGGAAGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8682:1256..3633-

>mRNA_L-elsbetiae_contig8682.17710.1 ID=mRNA_L-elsbetiae_contig8682.17710.1|Name=mRNA_L-elsbetiae_contig8682.17710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig8682:1256..3633- (Laminarionema elsbetiae ELsaHSoW15)
AGCTTTTTCAAGAAGCTAGTTGACAAGACCAAGAGGGGCCTGGGTAAAGT
GCGCAAGGGCCTTTCTCCGAACAAGGACAGGGCGGTGGGCGATTCGGAGA
GCTTTTTCAAGAAGCTAGTTGACAAGACCAAGAGGGGCCTGGGTAAAGTG
CGCAAGGGCCTTTCTCCGAACAAGGACAGGGCGGTGGGCGATTCGGAGAA
CCCGCTGGCAGAAGGTGTCGGTGTGGTGCTGGACGCAATCGACGAGTTGG
TAGCGGAGGGAGAGGCAACCGCCAGCAAAGCTGCTGGGGACGTGAAGGAG
GTGGTCGATAAGACGAAGGACTCGGTCAAGGACGCAATGGCGGCGTCCAA
GGATAAGCTGAACGCTGCGAGTGCGGACGTGCAAGCGACGGTGGACGCTG
CTCTTGAGGGTGCTGCAGCTGAGGTAGATGCAATGAAGGAAGGCATCAAG
GGGCTTGGAGACCAGGTCCACGCAGCTGCGAAGGAGTCCGCCGACTCCGC
CGCAGCGGCGTCGAAAGAGGCTCAAGAAACCGCGGAGAAGGAGGCCGCGG
AAGCGGCCGAGGCCGCCGCGGAAGTAAACCCGCTGGCAGAAGGTGTCGGT
GTGGTGCTGGACGCAATCGACGAGTTGGTAGCGGAGGGAGAGGCAACCGC
CAGCAAAGCTGCTGGGGACGTGAAGGAGGTGGTCGATAAGACGAAGGACT
CGGTCAAGGACGCAATGGCGGCGTCCAAGGATAAGCTGAACGCTGCGAGT
GCGGACGTGCAAGCGACGGTGGACGCTGCTCTTGAGGGTGCTGCAGCTGA
GGTAGATGCAATGAAGGAAGGCATCAAGGGGCTTGGAGACCAGGTCCACG
CAGCTGCGAAGGAGTCCGCCGACTCCGCCGCAGCGGCGTCGAAAGAGGCT
CAAGAAACCGCGGAGAAGGAGGCCGCGGAAGCGGCCGAGGCCGCCGCGGA
AGTA
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