mRNA_L-elsbetiae_contig8680.17709.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8680.17709.1
Unique NamemRNA_L-elsbetiae_contig8680.17709.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8680.17709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8680contigL-elsbetiae_contig8680:7593..8018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size427
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816948.287573-CDS-L-elsbetiae_contig8680:7592..79371622816948.287573-CDS-L-elsbetiae_contig8680:7592..7937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8680 7593..7937 +
1691683933.7709606-CDS-L-elsbetiae_contig8680:7592..79371691683933.7709606-CDS-L-elsbetiae_contig8680:7592..7937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8680 7593..7937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816948.3048894-UTR-L-elsbetiae_contig8680:7937..80181622816948.3048894-UTR-L-elsbetiae_contig8680:7937..8018Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8680 7938..8018 +
1691683933.7814002-UTR-L-elsbetiae_contig8680:7937..80181691683933.7814002-UTR-L-elsbetiae_contig8680:7937..8018Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8680 7938..8018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8680.17709.1prot_L-elsbetiae_contig8680.17709.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8680 7593..7937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8680.17709.1

>prot_L-elsbetiae_contig8680.17709.1 ID=prot_L-elsbetiae_contig8680.17709.1|Name=mRNA_L-elsbetiae_contig8680.17709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
CIAVGTFPLSLFGGVKSRACLTPQQQSKKERSRQLAIFLLITTHPQNSLP
QHTLAPEDALRRGLSALSRAYVSGVVRFAFLTRCAYVRLQARKLCAWQVS
VGKRTCFFPTTCIE*
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mRNA from alignment at L-elsbetiae_contig8680:7593..8018+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8680.17709.1 ID=mRNA_L-elsbetiae_contig8680.17709.1|Name=mRNA_L-elsbetiae_contig8680.17709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig8680:7593..8018+ (Laminarionema elsbetiae ELsaHSoW15)
TGTATAGCAGTGGGAACCTTTCCCTTGTCTCTGTTTGGGGGGGTGAAAAG
CCGCGCTTGCTTGACACCGCAGCAGCAGAGCAAGAAAGAGCGGAGTCGTC
AGTTGGCCATTTTTCTGCTGATCACCACACATCCACAAAACAGCTTACCC
CAGCACACCTTAGCACCAGAGGATGCTCTGAGGAGGGGTCTTAGTGCTCT
TTCGCGGGCGTATGTCTCTGGGGTGGTGCGTTTTGCATTTCTGACCCGGT
GTGCATACGTTAGGCTGCAGGCTCGCAAGCTGTGTGCGTGGCAGGTGTCG
GTTGGGAAAAGAACATGTTTTTTCCCTACGACTTGCATCGAATAAATTCT
AAATGTTGAGAAAAAGTCCTTGGCTAAAAATACGTTTGACGCGCGGCTTA
ACCTCCAAAACGTAGTTGTTATGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8680:7593..8018+

>mRNA_L-elsbetiae_contig8680.17709.1 ID=mRNA_L-elsbetiae_contig8680.17709.1|Name=mRNA_L-elsbetiae_contig8680.17709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig8680:7593..8018+ (Laminarionema elsbetiae ELsaHSoW15)
TGTATAGCAGTGGGAACCTTTCCCTTGTCTCTGTTTGGGGGGGTGAAAAG
CCGCGCTTGCTTGACACCGCAGCAGCAGAGCAAGAAAGAGCGGAGTCGTC
AGTTGGCCATTTTTCTGCTGATCACCACACATCCACAAAACAGCTTACCC
CAGCACACCTTAGCACCAGAGGATGCTCTGAGGAGGGGTCTTAGTGCTCT
TTCGCGGGCGTATGTCTCTGGGGTGGTGCGTTTTGCATTTCTGACCCGGT
GTGCATACGTTAGGCTGCAGGCTCGCAAGCTGTGTGCGTGGCAGGTGTCG
GTTGGGAAAAGAACATGTTTTTTCCCTACGACTTGCATCGAATAATGTAT
AGCAGTGGGAACCTTTCCCTTGTCTCTGTTTGGGGGGGTGAAAAGCCGCG
CTTGCTTGACACCGCAGCAGCAGAGCAAGAAAGAGCGGAGTCGTCAGTTG
GCCATTTTTCTGCTGATCACCACACATCCACAAAACAGCTTACCCCAGCA
CACCTTAGCACCAGAGGATGCTCTGAGGAGGGGTCTTAGTGCTCTTTCGC
GGGCGTATGTCTCTGGGGTGGTGCGTTTTGCATTTCTGACCCGGTGTGCA
TACGTTAGGCTGCAGGCTCGCAAGCTGTGTGCGTGGCAGGTGTCGGTTGG
GAAAAGAACATGTTTTTTCCCTACGACTTGCATCGAATAA
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