mRNA_L-elsbetiae_contig8666.17700.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8666.17700.1
Unique NamemRNA_L-elsbetiae_contig8666.17700.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8666.17700.1 vs. uniprot
Match: D7FHC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC5_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 3.910e-34
Identity = 67/99 (67.68%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   76 PDAP-VSLNAGGAVWFEDLPPAPPAPDTIGVLDEEEGEGLLALGGDPDRRPRWGRKPMSEHIPSEEEMETWDSKIEASDTWLDRGINKAMGALFGGGGD 369
            PDAP V LNA GAV F++LPPAPPAPDTIGVLDE+E E       +PD  PRWGR+PM EHIP+EEEME WD+K+   DTWLDR IN  MG+LFGGG D
Sbjct:   26 PDAPPVGLNAEGAVTFDELPPAPPAPDTIGVLDEKEKESPW---NEPDP-PRWGRRPMPEHIPTEEEMEAWDTKMAVPDTWLDRAINGVMGSLFGGGDD 120
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BLAST of mRNA_L-elsbetiae_contig8666.17700.1 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.050e-29
Identity = 68/99 (68.69%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:   76 PDAP-VSLNAGGAVWFEDLPPAPPAPDTIGVLDEEEGEGLLALGGDPDRRPRWGRKPMSEHIPSEEEMETWDSKIEASDTWLDRGINKAMGALFGGGGD 369
            PDAP V LNA GAV FE LPPAPPAPDTIGVLDE+E E       +P   PRWGR+PM EHIPSEEEME WD+K+   DTWLDR IN  MG+LFGGG D
Sbjct:  531 PDAPPVGLNAEGAVTFEKLPPAPPAPDTIGVLDEKEKESPW---NEP-TPPRWGRRPMPEHIPSEEEMEAWDTKMAVFDTWLDRAINGVMGSLFGGGDD 625
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8666.17700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHC5_ECTSI3.910e-3467.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5S7_9PHAE1.050e-2968.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8666contigL-elsbetiae_contig8666:1388..4334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size944
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8666.17700.1prot_L-elsbetiae_contig8666.17700.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8666 1388..3779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816947.7538867-CDS-L-elsbetiae_contig8666:1387..14661622816947.7538867-CDS-L-elsbetiae_contig8666:1387..1466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 1388..1466 +
1691683933.420243-CDS-L-elsbetiae_contig8666:1387..14661691683933.420243-CDS-L-elsbetiae_contig8666:1387..1466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 1388..1466 +
1622816947.767802-CDS-L-elsbetiae_contig8666:2252..24191622816947.767802-CDS-L-elsbetiae_contig8666:2252..2419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 2253..2419 +
1691683933.4322708-CDS-L-elsbetiae_contig8666:2252..24191691683933.4322708-CDS-L-elsbetiae_contig8666:2252..2419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 2253..2419 +
1622816947.7812254-CDS-L-elsbetiae_contig8666:3638..37791622816947.7812254-CDS-L-elsbetiae_contig8666:3638..3779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 3639..3779 +
1691683933.4427052-CDS-L-elsbetiae_contig8666:3638..37791691683933.4427052-CDS-L-elsbetiae_contig8666:3638..3779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 3639..3779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816947.7943819-UTR-L-elsbetiae_contig8666:3779..43341622816947.7943819-UTR-L-elsbetiae_contig8666:3779..4334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8666 3780..4334 +
1691683933.454037-UTR-L-elsbetiae_contig8666:3779..43341691683933.454037-UTR-L-elsbetiae_contig8666:3779..4334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8666 3780..4334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8666.17700.1

>prot_L-elsbetiae_contig8666.17700.1 ID=prot_L-elsbetiae_contig8666.17700.1|Name=mRNA_L-elsbetiae_contig8666.17700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
TKSERPKKTEKSRRRRTEADSEDVCPDAPVSLNAGGAVWFEDLPPAPPAP
DTIGVLDEEEGEGLLALGGDPDRRPRWGRKPMSEHIPSEEEMETWDSKIE
ASDTWLDRGINKAMGALFGGGGDGDSEK*
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mRNA from alignment at L-elsbetiae_contig8666:1388..4334+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8666.17700.1 ID=mRNA_L-elsbetiae_contig8666.17700.1|Name=mRNA_L-elsbetiae_contig8666.17700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2947bp|location=Sequence derived from alignment at L-elsbetiae_contig8666:1388..4334+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAAGAGCGAGCGCCCGAAAAAAACTGAGAAGAGCAGGAGGCGTCGGAC
GGAGGCGGACAGTGAAGATGTTTGCCCCGGTGAGAACCAGAGAGAGGGAG
AGAGAGAGAGAGAGAGAGAGAGGAGAGAGGCAAACAGATGGGAGGAGAGA
GATAGGGAGGGAGAGAAAGAGAGACAGGGAGGGATGGCGGGGAGGGAGAG
AGAGAGAAATAACCAGAGCTATGCAGTAGTTTCCATCAGGTGCTTCGACC
AATAGGTTCTGGCACGAAATATCTCCGATCGAGCGATCCGAGCAGTGTGT
GGTTTTTCCCTGCTCTGCTAAGATGGGGTTTGTTTTGTTCGTTGGAAATC
TCGGTCCAGTCGGGGTGTTTTCCTGCACACCAGCCCCCCAAGCGATACTT
GATTCGTGCGGTCCGGGTGGCCTAGCGCCGTACGCACAAGGCGTGGGTAC
CTGTTCTGCAGGGTGGAAGTAGGAGACGAACAAATCGTCCATCACAAGAA
GCTTCTGCCGGTCACGCGTGGGCTTTAGAGGGAATTGGTGTTCTCCTACG
CCAGGAGAAGAGGTTCTGTTTTTTGGGGGGGGTTGCCTGAAGTTCTTAGA
GCGAGGCACCCCCCTAAAAACCCCAACCCTCAGGGCCGTACAAGCTACCA
CCTTTGAGAGGTATATGGTCTCAAAGACAACATCACGCATGACTATGACC
CCCCCCCCCCCGGTACTGCTCGCCGAAGGGATTATCTTGGTCAATGATGG
GATGGCCAGCCCAAGCAGCAGTCACCTGTCTCCATGTCTTCACGCAGCAA
TGGAGTGACTCCCGCCCCCTTAATCTGCTGCTGCTGCTGCTGATGCTGCC
GCCGCCGCTGCTCAGACGCTCCGGTGAGTCTGAACGCCGGCGGAGCCGTG
TGGTTTGAGGACTTGCCGCCGGCCCCGCCCGCGCCAGACACGATCGGCGT
GCTCGACGAGGAGGAGGGGGAGGGGCTGCTCGCGTTAGGGGGAGACCCAG
ACCGGCGGCCCCGCTGGGGACGGAAGCCGATGGTAGGTACACACCTGGCG
CCCTACTACGTCTGTGCAATTTTGTGTGCTTCGTATTTAGTTATTTACGG
AGAGTTTGTTGCTGCTGTTGTTGCTGCTGGCATTGACCACGCTATCTGCT
GCCCAAGAGAGTAAGACGTCAGTTTCGTCTCAGCGAGCGGAGAGCATAAC
GCCCTTCTCAGGGGCCAGAGTTCCAACTCCTGAATAATTCGAAAATATAC
TGGCGCCTCATCGTGAGAGAGAGGATATGTGTGAGCAACTGTGTTGTCAG
CTGTTTAGTACCTACGACGCCACCAGAGGATTGGCAGCATGCACACCATT
ACTGTAGTGTTTTTTGCAAGCCGTCACACACCGAAAGAGCGTCTTCATTT
TTCTCTGCCGAAAACACTGATGCAAAGAGCGGAGGACCGCTGTATTTCAA
GTCCGAACCGAAGCTGGGATATTTCGCGGTGCTGGTTCTCCCACATTGTA
CATAAATCGCACGCTCTTCAGCACTACGTGCGCGTGTGTTATCTTACCTT
GTTATTTTGTTGCCAATGTTTCCTTTTGCTGTGGTGGTTTACGCTGGTAG
GTGGTCGCAGACGAGAGGGGCAGAGAAGGCTTGGGTGCGCGCGTGGTGCA
TAGTACATTGTGTATTGTTGCGCCGCCAGGAGGCGGCTGACCAATCAATA
TAGCCATCTCAGCGCACGCGTGTGTGTACAACAATGTAGCTGGCTACCAG
TTCCGATTTTGCGGCTACTACTGTTTCCACACCTTGCGGGCGCTAGTTCT
GTGCATTTTTTTATAAAACGTCGGCAGTACACGTGCATTTTGGCGAGAGC
GCGCAAGCGCGATGGTGATGAAAAAATCATCGGGACGCGAATGCAGGCAA
GCAGCCGCTCCAAACAGTCTGCCCCATCGACGTGCCCTTCCGTCTAACGC
TTTCCGCCGGCTAGAAGTACACAGCGCAAGTCCCATACAACCGAGAATAA
TCGCCAAGATCACGAGCTCGTGCTCCAACTGTGTAGAGATGGTCCCCACG
TGTGCGTGCCCCTTCCTTGGTTCTGAACGGGTTGGTTATAAACGAGAATC
AGTTTTGAACCGCCTATATTGTCTAGTTGTGGGCAGCGGGGGCCTTCCCT
GGGCTGTGAAAGAGGTTAACGACAATACCCCCCCCCCCCCTGTTTACGCT
TCCCTGTCCGCGTGACGTTTCCTGGCGGCTGAAAACCCGGCATCAAAACA
GTCGGAGCACATCCCGAGCGAAGAAGAGATGGAGACGTGGGACAGCAAGA
TCGAGGCTTCGGACACGTGGCTTGATCGAGGGATCAACAAGGCCATGGGA
GCGTTGTTCGGCGGTGGGGGAGACGGAGACAGCGAGAAATGACTTGACAG
CTATTTTAGATCAGAAAAGAGCATGTTTTTAATGGGAAGCGTTTTTTTTT
CATGTTTTAGTCGGCAGCGTGTTTTCCTGCAGAACTGTTCGGCTGCACTG
TAGGACACACAGACTACCGTACAGGGTATGCATCTGGTAGAAAGACGCAT
GATCGGTACACAGCAGTTATACAATGGGTAGTTTTCGCTCACGCTCTACT
GGTACACGGTTACAGAGAAGATTACCGTGCGATCTTCACAGCCAAACCCT
CTATACGAGGGAGCTCAGAGAGTCTCGGTTTTTGTCGTACATGCACAGAT
GTACGTGTCATTTCTCAAGGATTGATTGGGTTGGTTCAGGAGGGGAATCC
TGCCGTGGATGAGGTGAGACACCACCCTTCCTTCCCCCTTCGGCCGGGCT
TGATCTTTCGACTCCCGCACAAGGCGACGGGTGGCCTTTGTTGCTGAATC
GAGTTTGTATACAGTAGGGAACGTCTTTTCGGCAGGATCATGTGGCTGCA
TCGTCTGGCCTTGCGGGGGAATGGAGTAAGTTGAACAAACAGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8666:1388..4334+

>mRNA_L-elsbetiae_contig8666.17700.1 ID=mRNA_L-elsbetiae_contig8666.17700.1|Name=mRNA_L-elsbetiae_contig8666.17700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig8666:1388..4334+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAAGAGCGAGCGCCCGAAAAAAACTGAGAAGAGCAGGAGGCGTCGGAC
GGAGGCGGACAGTGAAGATGTTTGCCCCGACGAAGAGCGAGCGCCCGAAA
AAAACTGAGAAGAGCAGGAGGCGTCGGACGGAGGCGGACAGTGAAGATGT
TTGCCCCGACGCTCCGGTGAGTCTGAACGCCGGCGGAGCCGTGTGGTTTG
AGGACTTGCCGCCGGCCCCGCCCGCGCCAGACACGATCGGCGTGCTCGAC
GAGGAGGAGGGGGAGGGGCTGCTCGCGTTAGGGGGAGACCCAGACCGGCG
GCCCCGCTGGGGACGGAAGCCGATGACGCTCCGGTGAGTCTGAACGCCGG
CGGAGCCGTGTGGTTTGAGGACTTGCCGCCGGCCCCGCCCGCGCCAGACA
CGATCGGCGTGCTCGACGAGGAGGAGGGGGAGGGGCTGCTCGCGTTAGGG
GGAGACCCAGACCGGCGGCCCCGCTGGGGACGGAAGCCGATGTCGGAGCA
CATCCCGAGCGAAGAAGAGATGGAGACGTGGGACAGCAAGATCGAGGCTT
CGGACACGTGGCTTGATCGAGGGATCAACAAGGCCATGGGAGCGTTGTTC
GGCGGTGGGGGAGACGGAGACAGCGAGAAATGATCGGAGCACATCCCGAG
CGAAGAAGAGATGGAGACGTGGGACAGCAAGATCGAGGCTTCGGACACGT
GGCTTGATCGAGGGATCAACAAGGCCATGGGAGCGTTGTTCGGCGGTGGG
GGAGACGGAGACAGCGAGAAATGA
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