mRNA_L-elsbetiae_contig8666.17699.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8666.17699.1
Unique NamemRNA_L-elsbetiae_contig8666.17699.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8666.17699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8666contigL-elsbetiae_contig8666:185..1183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size590
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816947.6996899-CDS-L-elsbetiae_contig8666:184..4371622816947.6996899-CDS-L-elsbetiae_contig8666:184..437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 185..437 +
1691683933.3945038-CDS-L-elsbetiae_contig8666:184..4371691683933.3945038-CDS-L-elsbetiae_contig8666:184..437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 185..437 +
1622816947.7163444-CDS-L-elsbetiae_contig8666:846..11811622816947.7163444-CDS-L-elsbetiae_contig8666:846..1181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 847..1181 +
1691683933.4085555-CDS-L-elsbetiae_contig8666:846..11811691683933.4085555-CDS-L-elsbetiae_contig8666:846..1181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8666 847..1181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8666.17699.1prot_L-elsbetiae_contig8666.17699.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8666 185..1181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8666.17699.1

>prot_L-elsbetiae_contig8666.17699.1 ID=prot_L-elsbetiae_contig8666.17699.1|Name=mRNA_L-elsbetiae_contig8666.17699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
QKQHPGTGTPTICPRARPASRHLAQIWPPRGRCYCRGGGGAGAGAAVTSA
AERPRVEENPEAPVVVVVVVRRKRQLAPGKRADGGSIRRSKRHPRRAGKN
SLATTLAAAAAAAAAAVATGGGETRKKSSAIFLLVLPTVAMMVMMVMTVM
ISVVVVVMVVVAMLAETTGVTRPVGTVAAWARPRAPRRSDPRHSSR
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mRNA from alignment at L-elsbetiae_contig8666:185..1183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8666.17699.1 ID=mRNA_L-elsbetiae_contig8666.17699.1|Name=mRNA_L-elsbetiae_contig8666.17699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=999bp|location=Sequence derived from alignment at L-elsbetiae_contig8666:185..1183+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAAGCAGCACCCGGGGACGGGGACGCCGACGATCTGTCCCCGCGCGCG
GCCGGCCTCCAGGCATTTGGCGCAAATCTGGCCGCCGCGAGGACGATGCT
ACTGTCGAGGGGGAGGGGGAGCGGGAGCGGGGGCGGCGGTGACGTCAGCG
GCGGAACGCCCCCGAGTGGAAGAGAATCCGGAGGCGCCGGTAGTGGTGGT
GGTGGTGGTGCGAAGAAAGCGTCAGCTGGCGCCGGGAAAACGGGCGGACG
GCGGTAAGAAACGCCTCTCTGTTGTTTTGGAACGGTACATGTTGTATTTA
GTACGAAGTATTTAGCAATATTTTGTTTTGTTTTTCGGTAAGGTCACGAA
CGCCTTTGTTCTTCTTGCGTTTTCAGGCGTCCATGTACATACGTACGTAC
ACCAACAAGGCGCTGTTTGGCGTTCCATTTCCCAACGACTTTGAGAGGGT
GTGTTCCAAGCACGGAGTTTCGTACGGTAGACAGGCTTGGTTCTTCACGG
ATTTTTACCGATGCCGCTCAAACAGAGAACCAGTGGCAGCAGCTCTCGTA
TCCAAGAGGAGAGCTAAGCAGAAAAGGAGGCCAAGGGGAGTGCGGACAGC
ACTAAGTGGATATGCTGTTCCACTTACGCGGCCAACTTCTCTCCCGGCTT
GATGTTGCTCAGGGTCGATACGGAGGAGCAAAAGGCACCCAAGGCGGGCG
GGGAAAAACTCACTCGCGACGACGTTGGCAGCAGCAGCAGCAGCAGCGGC
GGCAGCAGTAGCAACGGGAGGCGGAGAAACGCGGAAGAAAAGTTCCGCGA
TTTTCCTTCTCGTGCTTCCGACCGTGGCGATGATGGTGATGATGGTAATG
ACGGTAATGATCTCGGTGGTGGTGGTGGTGATGGTAGTGGTGGCGATGTT
GGCGGAGACGACTGGAGTTACTCGCCCGGTAGGGACAGTCGCGGCTTGGG
CTCGTCCAAGAGCCCCAAGACGAAGCGACCCTCGGCACAGCTCTCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8666:185..1183+

>mRNA_L-elsbetiae_contig8666.17699.1 ID=mRNA_L-elsbetiae_contig8666.17699.1|Name=mRNA_L-elsbetiae_contig8666.17699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig8666:185..1183+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAAGCAGCACCCGGGGACGGGGACGCCGACGATCTGTCCCCGCGCGCG
GCCGGCCTCCAGGCATTTGGCGCAAATCTGGCCGCCGCGAGGACGATGCT
ACTGTCGAGGGGGAGGGGGAGCGGGAGCGGGGGCGGCGGTGACGTCAGCG
GCGGAACGCCCCCGAGTGGAAGAGAATCCGGAGGCGCCGGTAGTGGTGGT
GGTGGTGGTGCGAAGAAAGCGTCAGCTGGCGCCGGGAAAACGGGCGGACG
GCGCAGAAGCAGCACCCGGGGACGGGGACGCCGACGATCTGTCCCCGCGC
GCGGCCGGCCTCCAGGCATTTGGCGCAAATCTGGCCGCCGCGAGGACGAT
GCTACTGTCGAGGGGGAGGGGGAGCGGGAGCGGGGGCGGCGGTGACGTCA
GCGGCGGAACGCCCCCGAGTGGAAGAGAATCCGGAGGCGCCGGTAGTGGT
GGTGGTGGTGGTGCGAAGAAAGCGTCAGCTGGCGCCGGGAAAACGGGCGG
ACGGCGGGTCGATACGGAGGAGCAAAAGGCACCCAAGGCGGGCGGGGAAA
AACTCACTCGCGACGACGTTGGCAGCAGCAGCAGCAGCAGCGGCGGCAGC
AGTAGCAACGGGAGGCGGAGAAACGCGGAAGAAAAGTTCCGCGATTTTCC
TTCTCGTGCTTCCGACCGTGGCGATGATGGTGATGATGGTAATGACGGTA
ATGATCTCGGTGGTGGTGGTGGTGATGGTAGTGGTGGCGATGTTGGCGGA
GACGACTGGAGTTACTCGCCCGGTAGGGACAGTCGCGGCTTGGGCTCGTC
CAAGAGCCCCAAGACGAAGCGACCCTCGGCACAGCTCTCGGGGTCGATAC
GGAGGAGCAAAAGGCACCCAAGGCGGGCGGGGAAAAACTCACTCGCGACG
ACGTTGGCAGCAGCAGCAGCAGCAGCGGCGGCAGCAGTAGCAACGGGAGG
CGGAGAAACGCGGAAGAAAAGTTCCGCGATTTTCCTTCTCGTGCTTCCGA
CCGTGGCGATGATGGTGATGATGGTAATGACGGTAATGATCTCGGTGGTG
GTGGTGGTGATGGTAGTGGTGGCGATGTTGGCGGAGACGACTGGAGTTAC
TCGCCCGGTAGGGACAGTCGCGGCTTGGGCTCGTCCAAGAGCCCCAAGAC
GAAGCGACCCTCGGCACAGCTCTCGG
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