mRNA_L-elsbetiae_contig8627.17660.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8627.17660.1
Unique NamemRNA_L-elsbetiae_contig8627.17660.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 250 bits (638), Expect = 2.440e-83
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:   46 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    6 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 249 bits (637), Expect = 2.830e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   49 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 248 bits (633), Expect = 1.150e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   49 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.300e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   49 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 249 bits (637), Expect = 3.300e-82
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   49 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: A0A836G1Z3_9HYME (Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A836G1Z3_9HYME)

HSP 1 Score: 247 bits (630), Expect = 3.780e-82
Identity = 133/140 (95.00%), Postives = 137/140 (97.86%), Query Frame = 1 
Query:   37 FQSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            F  TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 FDFTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: F7BPK5_MONDO (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7BPK5_MONDO)

HSP 1 Score: 246 bits (629), Expect = 5.200e-82
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   43 STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL+RKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLVRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: A0A164UB18_9CRUS (Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164UB18_9CRUS)

HSP 1 Score: 247 bits (630), Expect = 6.050e-82
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 1 
Query:   16 FQAFPHTFQSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            FQ   +    TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    8 FQFITNHLTKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 154
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: UPI00115647F2 (histone H3-like n=1 Tax=Aedes albopictus TaxID=7160 RepID=UPI00115647F2)

HSP 1 Score: 248 bits (634), Expect = 6.320e-82
Identity = 133/140 (95.00%), Postives = 139/140 (99.29%), Query Frame = 1 
Query:   37 FQSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            F++TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   58 FRATMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 197
[Close]
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 6.670e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   49 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 456
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8627.17660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK2.440e-8398.54Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA2.830e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A1Z5K8H0_FISSO1.150e-8298.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA1.300e-8298.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC3.300e-8299.26Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A836G1Z3_9HYME3.780e-8295.00Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=3321... [more]
F7BPK5_MONDO5.200e-8295.65Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7B... [more]
A0A164UB18_9CRUS6.050e-8291.16Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 Rep... [more]
UPI00115647F26.320e-8295.00histone H3-like n=1 Tax=Aedes albopictus TaxID=716... [more]
D7G4I9_ECTSI6.670e-8298.53Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8627contigL-elsbetiae_contig8627:909..1367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.1
Seed ortholog evalue1e-65
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816944.5877435-CDS-L-elsbetiae_contig8627:908..13671622816944.5877435-CDS-L-elsbetiae_contig8627:908..1367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8627 909..1367 -
1691683931.176723-CDS-L-elsbetiae_contig8627:908..13671691683931.176723-CDS-L-elsbetiae_contig8627:908..1367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8627 909..1367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8627.17660.1prot_L-elsbetiae_contig8627.17660.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8627 909..1367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8627.17660.1

>prot_L-elsbetiae_contig8627.17660.1 ID=prot_L-elsbetiae_contig8627.17660.1|Name=mRNA_L-elsbetiae_contig8627.17660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
SDRSTFQAFPHTFQSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATG
GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLR
FQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE
RS*
back to top

mRNA from alignment at L-elsbetiae_contig8627:909..1367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8627.17660.1 ID=mRNA_L-elsbetiae_contig8627.17660.1|Name=mRNA_L-elsbetiae_contig8627.17660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=459bp|location=Sequence derived from alignment at L-elsbetiae_contig8627:909..1367- (Laminarionema elsbetiae ELsaHSoW15)
TCCGATCGCTCTACCTTTCAAGCCTTCCCACACACCTTTCAGAGCACCAT
GGCTCGCACCAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCCCC
GCAAGCAGCTGGCCACCAAGGCGGCACGCAAGTCCGCGCCCGCCACCGGC
GGAGTAAAGAAGCCCCACCGCTACAGGCCCGGCACCGTCGCCCTCCGCGA
GATCCGTCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGT
TCCAGCGCCTGGTGCGCGAGATCGCCCAGGACTTCAAGAGCGACCTCCGC
TTCCAGGGCTCCGCCGTGCTGGCCCTCCAGGAGGCCGCCGAGGCCTACCT
TGTGGGCCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCG
TGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGGGGCGAG
CGCTCTTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8627:909..1367-

>mRNA_L-elsbetiae_contig8627.17660.1 ID=mRNA_L-elsbetiae_contig8627.17660.1|Name=mRNA_L-elsbetiae_contig8627.17660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig8627:909..1367- (Laminarionema elsbetiae ELsaHSoW15)
TCCGATCGCTCTACCTTTCAAGCCTTCCCACACACCTTTCAGAGCACCAT
GGCTCGCACCAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCCCC
GCAAGCAGCTGGCCACCAAGGCGGCACGCAAGTCCGCGCCCGCCACCGGC
GGAGTAAAGAAGCCCCACCGCTACAGGCCCGGCACCGTCGCCCTCCGCGA
GATCCGTCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGT
TCCAGCGCCTGGTGCGCGAGATCGCCCAGGACTTCAAGAGCGACCTCCGC
TTCCAGGGCTCCGCCGTGCTGGCCCTCCAGGAGGCCGCCGAGGCCTACCT
TGTGGGCCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCG
TGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGGGGCGAG
CGCTCTTAGTCCGATCGCTCTACCTTTCAAGCCTTCCCACACACCTTTCA
GAGCACCATGGCTCGCACCAAGCAGACCGCCCGTAAGTCCACCGGAGGCA
AGGCCCCCCGCAAGCAGCTGGCCACCAAGGCGGCACGCAAGTCCGCGCCC
GCCACCGGCGGAGTAAAGAAGCCCCACCGCTACAGGCCCGGCACCGTCGC
CCTCCGCGAGATCCGTCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCA
AGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCCCAGGACTTCAAGAGC
GACCTCCGCTTCCAGGGCTCCGCCGTGCTGGCCCTCCAGGAGGCCGCCGA
GGCCTACCTTGTGGGCCTGTTCGAGGACACCAACCTGTGCGCCATCCACG
CCAAGCGCGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATC
CGGGGCGAGCGCTCTTAG
back to top