mRNA_L-elsbetiae_contig8616.17650.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8616.17650.1
Unique NamemRNA_L-elsbetiae_contig8616.17650.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: D8LN89_ECTSI (Liver stage antigen 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN89_ECTSI)

HSP 1 Score: 374 bits (960), Expect = 2.550e-111
Identity = 226/434 (52.07%), Postives = 287/434 (66.13%), Query Frame = 1
Query:  322 GQNSGSSLRRPSATLAFVLIAQIQFLATLSLVSRTGAKDSSVSSFADNVRWVNLWPPQSFAESFTPTGASGEESSAGGDQQE---------------DGTERDASAGLSSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRARSMNMPPSELLGLPSRRRIAHDPNADPSQRSFAVSASSGDGGGQAGGADEEGGLPVATRRGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVFKVSSEGDENSDQ---SSNRGFAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            G    SS+RRPS T+A V + Q+QFLATLSLV  TG +DS +  FA+N+RW+NLWPP SFA SFTP    GE    G D                  +G E + S     D+SS VF+GNLVLF  IL  I+++HI +ASG+EAYW+AK+ A +   RA+   +P  EL    S      DPN++ SQRS   + +SGD  G+A   D E G+P       R  + KIAECRERSQS WLHFPHVEL++LLFAFEGAVAAQV A+RE+A+ LV++LA+  L+ +PVLM   V  +F  K+R    IVF  +++    ++    +S R F +KV+  LKE +SMF+W++KG+WESV+T D E K+ RDWFRIGFEPLFVDFT  GSWF VY LIE  A  VVGVVVDNSVLQLSLF A ++VSF+LLV+ KPFAN
Sbjct: 2174 GLQDSSSIRRPSTTMAIVALGQLQFLATLSLVGNTGTEDSKLYDFANNLRWINLWPPASFARSFTPASMYGELDQEGEDAXXXXXXXXXXXXXXXXXEGVENEESG----DLSSGVFVGNLVLFLIILFIIFLIHITVASGIEAYWLAKRGAEKHVARAQRRGVPVRELSARLSNPWAPFDPNSE-SQRSLRTAKTSGDDEGEADDTDAEEGMPETV---GRSKLSKIAECRERSQSVWLHFPHVELMYLLFAFEGAVAAQVSAIRENATLLVLILAVLALLFFPVLMTFNVMCTFFGKIRSKKHIVFIPNADDAVEAESDLYTSVRSFGSKVRRGLKESYSMFAWSNKGEWESVDTPDEEDKRARDWFRIGFEPLFVDFTGAGSWFAVYALIELVANAVVGVVVDNSVLQLSLFGAFNTVSFLLLVVLKPFAN 2599          
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 3.380e-104
Identity = 210/427 (49.18%), Postives = 280/427 (65.57%), Query Frame = 1
Query:  340 SLRRPSATLAFVLIAQIQFLATLSLVSRTGAKDSSVSSFADNVRWVNLWPPQSFAESFTPTGASGEESSAGGDQ--QEDGTERDASAGLS-SDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRARSMNMPPSELLGLPSRR--RIAHDPNADPSQRSFAVSASSGDGG-----GQAGGAD-----EEGGLPVATR-RGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVFK-VSSEGDENSDQSSNRGFAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            S+R PS T+A +L+ QIQFLATLSLV  TGA+DS +S    N+RWVNLWPP S   +F          S+GG++  Q+DG+        S SDI + VF+GN+ LF ++L GI V+HI L S VEAYW++K+RA E   +A+   +P   + GL +RR  R+AH P+A+      A SAS+ DG        A   D     EE G+P+ +R +G R     +A+CR RS S WL+FPH+EL+FLLFAFEGA+A+Q+  +R    P V   A ++LV+YPVLMI+L  R+   +V P+  IVFK V  E +  +D +  R F +KV+T LKEDHSMF+WA+ G WE+VET D E  +E D FRIGFEPLFVDFTKK SWF VY L+E   +    V+VD+SV+QL LFC +HS+SF+LLV+F+PFAN
Sbjct:   44 SVRAPSVTIAVLLLTQIQFLATLSLVDSTGAEDSLLSELTQNLRWVNLWPPDSVGRTF----------SSGGERLFQQDGSRACGIEPTSASDIGALVFLGNIGLFTSLLLGIVVIHIVLVSAVEAYWLSKERAMEELTKAQRRGIP---IRGLGARRASRVAHSPDAESDPDELAASASN-DGAMSREHAAADSVDVGVDFEEDGIPIRSRPKGLRA---MLADCRYRSSSVWLYFPHIELLFLLFAFEGAMASQLATMRGGGCPWVFYSACASLVVYPVLMIILSYRTHRVRVAPDTLIVFKPVGEEENHGTDGTVPRSFLSKVRTGLKEDHSMFAWANTGAWETVETPDEETVREGDQFRIGFEPLFVDFTKKASWFTVYFLLEMTGIACTAVLVDDSVVQLFLFCGLHSLSFLLLVIFRPFAN 453          
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 1.980e-98
Identity = 209/479 (43.63%), Postives = 301/479 (62.84%), Query Frame = 1
Query:  172 AAGAVSTLAVTGVIATTVSTLLGSTAAGVPPGVQGNPGARNPWRPENAARGQNSGSSLRRPSATLAFVLIAQIQFLATLSLVSRTGAKDSSVSSFADNVRWVNLWPPQSFAESFTPTGASGEESSAGGDQQEDGTERDASAGLSSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRAR----SMNMPPSELLGLPSRRRIAHDPNADPSQRSFAVSA---------SSGDGGGQAGGADEEGGLPVATRRGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVFKVSSEGDENSDQSSNRGFAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            AA  +ST +V GV+ +TV T+LG  ++ +  G       +               S+ R PSAT+AFVL +QIQFLATLS V  TGA++S+ S   +N+RWVNLWP +SF+E       S E        ++D T    S  ++S++ S +FMGNL LF+ +L  I+  H+ +AS VEAYW+AK+RA ++  R+     S++  P  L G  S++    D ++  SQ S  + +         S  DGG     +DEE G P  TR G  +   ++++CRE SQS WLH+PH+EL+FL FAFEGAV +Q+ A+R + S  ++  A++TLVLYP+LM+V+V+R+    V+P+  IVF  SSE +E    +      ++  + LK D S+FSWADKGQWE+V+T++ + +++ DWFRIGFEPLF DFT+ GSWF++YTLIE A L  + V+VDNS +Q  LFCAMHS++F+LLV +KPFAN
Sbjct:   99 AASVMSTASVVGVMTSTVVTVLGGASSSMVAGGTAQAATQ---------------STCRSPSATMAFVLTSQIQFLATLSFVDTTGAEESAFSDLTNNLRWVNLWPSESFSEGIASRIISDEPDQPS--DEDDTTPSAISQTVTSNVGSLLFMGNLALFSGLLVIIFTSHVLVASVVEAYWVAKQRARKVISRSLRRGLSLSEIPIALSGTWSQQPTMDDGSSAGSQSSGIMQSPQRMERQAVSPYDGGDSK--SDEEEGGPRNTRPGNSIG--QVSDCRELSQSPWLHYPHLELIFLFFAFEGAVTSQMAALRSANSSTILYAAVATLVLYPLLMVVMVARTHRVWVQPDALIVF-ASSETEEA--LAGKPSTLSRTVSGLKNDFSLFSWADKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFAN 553          
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 1.740e-91
Identity = 209/480 (43.54%), Postives = 267/480 (55.62%), Query Frame = 1
Query:  358 ATLAFVLIAQIQFLATLSLVSRTGAKDSSVSSFADNVRWVNLWPPQSFAESFTPTGASGEESSAGGDQQED---GTERDASAGLSSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRARSMNM-------------------PPSELLGLPS-------------RRRIAHDPNA------------------DPSQRSFAV-------------SASSGDG--GGQAGGADEEGGLPVATRRGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVFKVSSEGDENSD--------QSSNRGFAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            A L  V + Q+QFLATLSLV  TG +DSS+  FAD+ RW NLWPP SFAE F  T   G++             G   D S G    + S VF+GN  L    L  I+++H++L SGVEAYW+AKKRA E   RAR + +                   P  E    PS             RRR+  DP+                   D   RS  V              A S D   G      DEEGG  + T       +  +AECRE S+SAWLHFPHVELVFL FA+EGAVA+QV A+RE+  P V++ A   LV YP+LM V V R+F  +VRPN  IVF      D+  D        ++ +  F +KV+   +EDHS+F+WA+KG WE+ ET +   ++E  WFRIGFEPLFVDFTK G+WFV +TL+EWAALG +G ++D SVLQLSLFCA+H++SF+LLV+F+PFAN
Sbjct:  758 AILGAVAVTQLQFLATLSLVDDTGGEDSSLPGFADSFRWANLWPPASFAEEFIDTSDEGQQRRLXXXXXXXXXXGCSWDGSLG---GLGSLVFIGNQGLVFGALVLIFLLHVSLVSGVEAYWLAKKRAKEEAARARRLGVSIGEYFSDTHVDGREHEQAPVPEPDARPSGGTTDISVASSFRRRRLRRDPSLLNAAATGSQRRLEKLPALDAPHRSRKVRDGSWVAEDGEKKEARSDDNLSGTDCSDYDEEGGGGLGTLTRAESRLSPVAECREHSRSAWLHFPHVELVFLFFAYEGAVASQVSALREAGCPPVMIAAGLALVFYPILMFVAVLRTFFVRVRPNTLIVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFAN 1234          
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 3.260e-90
Identity = 213/506 (42.09%), Postives = 285/506 (56.32%), Query Frame = 1
Query:  148 QVSTPATVAAGAVSTLAVTGVIATTVSTLLGSTAAG-------------VPPGVQGNPGARNPWRP-ENAARGQNSG-SSLRRPSATLAFVLIAQIQFLATLSLVSRTGAKDSSVSSFADNVRWVNLWPPQSFAESFTPTGASGEESSAGGDQQEDGTERDASAGLSSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRARSMNMPPSELLGLPSRRRIAHDPN---ADPSQRSFAVSASSGDGGGQAGGA-------------DEEGGLPVATRRGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVFKVSSEGDENSDQSSNRG-FAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            +V  P T AAGAVS LA+ G++  +  +++ S                       G  G  +P  P +  A G+N   +S RRPSATLAFVL+ Q+QFLATLSLV     +DS ++ F   +RW+NLW P    ++      + E  ++G                   I + VF+GNL L   IL  I+ +H+A  SGVEA W+ KKRA E    AR    P  EL       RI    N   ADPS   FA  A       Q  G              +EEGG  +   R +   +  +A CRE S SAWLHFPHVELVFL FAFEGAVA+   A+R S  P +   A++ +VLYP+LM V V R+ + +VRPN  ++FK  +E   N D  S  G   ++ K+S  E++S+FSWADKGQWE+V+T D +V +E DWFRIGFEP+FVD+TK+G+WF+V +L+EWAA   VGV+++NSV+QL LFC +HSV F +L+  KPFAN
Sbjct: 1109 EVERPGTTAAGAVSILALIGILVVSTGSVIRSNRGNGSXXXXXXXXXXXXXXXXXGLSGTVDPLTPADGTAEGENPPHASNRRPSATLAFVLMTQLQFLATLSLVDYVMDEDSWLADFVTGLRWINLWWPAEVGQNIASDECAFEAGASG-------------------IGALVFVGNLALVIGILLAIFFMHVAAVSGVEALWLTKKRARENLDAARRRGAPIGELQARLRGGRIICRTNPDLADPSP--FARQAP------QPSGTPSTLHEEESDMSDEEEGGRGLVPMR-SENRLSPVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEIFYTAIAAMVLYPLLMFVTVFRTLLVRVRPNVLLIFKTYAEDGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFAN 1586          
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: D7G5F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F3_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 4.840e-89
Identity = 187/388 (48.20%), Postives = 252/388 (64.95%), Query Frame = 1
Query:  466 VRWVNLWPPQSFAESFTPTGASGE-ESSAG--GDQQEDG--TERDASAGLSSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRARSMNMPPSE----LLGLPSRRRIAHDPNADPSQRSF-----------AVSASSGDGGGQAGGADEEGGLPVATRRGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVFKVSSEGDENSDQSSNRGFAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            +RWVNLWP QSF+E       S E ES+AG  GD +EDG  T+R  S  + SD+ S +FMGNL LFA  L  I+ +HI +AS +EAYW+AK+RA     RA   ++  SE    LLG   +++   D  +   Q S            AVS+    GGG +    + G     TR G+ +   ++++CRE SQSAWLH+PH+ELVFLLFAFEGAV +QV A+R ++S  V   A++TLV YPVLM+ +V R+   +VR +  IVF  S+E DE S  +S+    +K    L++D S+F+WADKGQWE+V+T+D + ++  DWFRIGFEPLF DFT+ GSWF+VYTLIEWA L  + V+VDN+ +Q  LFCA+HS++FILLV  KPFAN
Sbjct:    6 IRWVNLWPSQSFSEGVASRVLSNEPESTAGEDGDSEEDGDATQRGISWTVISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKQRARNEVPRALRGDVSTSEFPTALLGTRPQQKNLDDGWSAGRQTSGTIQSPQLMEHQAVSSWDSTGGGDSTNEQKRG--RTNTRAGSSIG--QVSQCRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVVRTHRVRVRSDALIVF-TSNESDEGSTGTSS--IYSKTIAGLRKDSSLFAWADKGQWETVQTTDEDARRNADWFRIGFEPLFADFTQAGSWFIVYTLIEWAVLACIAVLVDNTAVQCGLFCAIHSMTFILLVACKPFAN 386          
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 3.260e-87
Identity = 203/496 (40.93%), Postives = 283/496 (57.06%), Query Frame = 1
Query:  148 QVSTPATVAAGAVSTLAVTGVIATTVSTLL---------------GSTAAGVPPGVQGNPGARNPWRPENAARGQNSGSSLRRPSATLAFVLIAQIQFLATLSLVSRTGAKDSSVSSFADNVRWVNLWPPQSFAESFTPTGASGEESSAGGDQQEDGTERDASAGLSSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRARSMNMPPSELLGLPSRRRIAHDPN---ADPSQRSFAVSASSGDGGGQAGGADEEGG---LPVATRRGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVFKVSSEGDENSDQSSNRG-FAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            +V +P T+AAGAVS  A+ G++  +  +++               G  +A    G+    GA  P   E          S RRPSATLAFVL+ Q+QFLA LSLV    ++ S ++ F   +RW+NLW P    E     G   E  +                   S+I + VF+GNL L   IL  I+ +H+A+ SG EA W+ KKRA E    AR  N P SELL      RI    N    DPS  +    +   DG  +    +EEGG   +P+ +       +  +A CRE S SAWLHFPHVELVFL FAFEGAVA+   A+R S  P +   A++ +VLYP+LM   V R+   +VRP++ ++FK   E   N +  + RG F ++ K+S  E++S+FSWADKGQWE+V+T +  + +E DWFRIGFEP+FVD+TK+G+WF+V +L+EWA++ +VGV++DNS +QL LFC + S  F++LV  KPFAN
Sbjct: 1339 EVESPGTIAAGAVSIFALIGIMVVSTGSIVRSNHGNGSVSSAGGAGGASADGSRGLVDTAGAIAPVG-ETGEGDSPPRVSHRRPSATLAFVLMTQLQFLAMLSLVDYVVSQGSWLADFVVGLRWINLWWPADIGEDIASDGCIFETGA-------------------SEIGALVFVGNLALVLGILLAIFFLHVAVVSGAEALWLTKKRARENLDGARRRNTPISELLARFRGGRIIRQTNPGLTDPSPFASRNPSLVRDGSQRT--DEEEGGRELVPMCSEN----RLSPVAMCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNTPNGRGGFLSRFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFAN 1808          
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 1.200e-84
Identity = 197/431 (45.71%), Postives = 262/431 (60.79%), Query Frame = 1
Query:  337 SSLRRPSATLAFVLIAQIQFLATLSLVSRTGAKDSSVSSFADNVRWVNLWPPQSFAESFT-------PTGASGEESSAGGDQQEDG--TERDASAGLSSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRARSMNMPPSELLGLPSRRRIAHDPNADPSQRSFAVSASSGDGGGQAGGADEEGGLPVATRRGTRL--NMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVS---------RSFVRKVRPNDDIVFKVSSEGDENSDQSSNRGFAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            S+ R PS+T+A VL +QIQFLATLS V  TG + S++S    N+RWVNLWP QSF+E          P   SGE+     D +EDG  T+R  S  + SD+ S +FMGNL LFA     I+ VHI LAS VEAYW+AK+RA     RA   ++  S      S  R    P     Q   +  ++         G ++   +  A R  TR   ++ +++ECRE SQSAWLH+PH+ELVFL FAFEGAV +QV A+R ++S  V   A++TL    +  I  +S         R  VR VR +  IVF  S++ DE S   S     +K+ T LK+D S+F+WADKG W +V+T+D + +++ DWFRIGFEPL+ DFT+ GSWF VYTLIEWA L  + V+VDNS +Q  LFCA+HS++FILLV+ KPFAN
Sbjct:   95 STFRNPSSTMALVLTSQIQFLATLSFVDDTGVEGSALSGLTKNLRWVNLWPSQSFSEGVASWVLCNEPEPTSGEDD----DSEEDGDSTQRGISWTVISDVGSFLFMGNLALFAGFFVIIFSVHILLASAVEAYWLAKQRARNEIPRALGGDLSTSGSSTAWSGTRAIQSPQLMEHQALPSWDST---------GRNDSTNVQEAARTNTRAGSSIGQVSECRELSQSAWLHYPHLELVFLFFAFEGAVTSQVSALRSTSSSTVFYAAVATLTGCNLSRIATMSILGFILFDVRGRVR-VRSDALIVF-TSNKTDEGSTGKST--LYSKMVTGLKKDSSLFAWADKGHWNTVQTADEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFAN 508          
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 6.790e-84
Identity = 183/417 (43.88%), Postives = 250/417 (59.95%), Query Frame = 1
Query:  340 SLRRPSATLAFVLIAQIQFLATLSLVSRTGAKDSSVSSFADNVRWVNLWPPQSFAESFTPTGASGEESSAGGDQQEDGTERDASAGLSSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRARSMNMPPSELLGLPSRRRIAHDPN---ADPSQRSFAVSASSGDGGGQAGGADEEGG---LPVATRRGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVFKVSSEGDENSDQSSNRG-FAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            S RRPSATLAFVL+ Q+QFLA LSLV    ++ S ++ F   +RW+NLW P    E     G   E  +                   S+I + VF+GNL L   IL  I+ +H+A+ SG EA W+ KKRA E    AR  N P SELL      R+    N    DPS       +   D   +    +EEGG   +P+ +       +  +A CRE S SAWLHFPHVELVFL FAFEGAVA+   A+R S  P +   A++ +VLYP+LM   V R+   +VRP++ ++FK   E   N +  + RG F +  K+S  E++S+FSWADKGQWE+V+T +  + +E DWFRIGFEP+FVD+TK+G+WF+V +L+EWA++ +VGV++DNS +QL LFC + S  F++LV  KPFAN
Sbjct: 1376 SHRRPSATLAFVLMTQLQFLAMLSLVDYVVSQGSWLADFVVGLRWINLWWPAEIGEDIVSDGCIFETGA-------------------SEIGALVFVGNLALVLGILLAIFFLHVAVVSGAEALWLTKKRARENLDGARRRNTPISELLARFRGGRMIRRTNPGLTDPSPFGSRNPSLVRDRSQRT--DEEEGGRGLVPMCSEN----QLSPVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNAPNCRGGFLSHFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFAN 1767          
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Match: A0A6H5JR60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR60_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 1.250e-83
Identity = 184/429 (42.89%), Postives = 251/429 (58.51%), Query Frame = 1
Query:  337 SSLRRPSATLAFVLIAQIQFLATLSLVSRTGAKDSSVSSFADNVRWVNLWPPQSFAESFTPTGASGEESSAGGDQQEDGTERDASAGLSSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGRARSMNMPPSELLGLPSRRRIAHDPN---ADPSQRSFAVSASSG-------------DGGGQAGGADEEGGLP-VATRRGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAVAAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVFKVSSEGDENSDQSSNRG-FAAKVKTSLKEDHSMFSWADKGQWESVETSDTEVKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQLSLFCAMHSVSFILLVLFKPFAN 1569
            +S RRPSATL FVL+ Q+QFLATLSLV     +DS ++ F   +RW+NLW      ++     ++ E  ++G                   I + VF+GN+ L   IL  I+ +H+A  SGVEA W+ KK A E    AR    P  EL       RI    N   ADPS  S     +SG             D        +EEGG   V  R   RLN   +A CRE S SAWLHFPHVELVF  FAFEGAVA+   A+R    P +   A++ +VL P+LM V V R+ + +VRPN  ++FK  +EG  + D  S  G F ++ K+S +E++S+FSWADK QWE+ +T D ++ +E DW RIGFEP+FV++TK+G+WF+V +L+EW AL +VGV+V+NS++QL LFC + SV F++L+  KPFAN
Sbjct:  207 ASNRRPSATLTFVLMTQLQFLATLSLVDYVMDEDSWLADFVTGLRWINLWWLAEVGQNIASDESAFEAGASG-------------------IRALVFVGNVALVKGILLAIFFIHVAAVSGVEALWLTKKPARENLDAARRRGAPIGELQARLRGVRIICRTNPDLADPSPFSRQAPHASGTLSTLNEEESDMSD--------EEEGGRGRVPMRSENRLN--PVATCREHSTSAWLHFPHVELVFQFFAFEGAVASFASAIRNYECPKIFYTAIAAMVLCPLLMFVTVFRTLLVRVRPNVLLIFKTYAEGGTSGDAPSRAGGFLSRFKSSWEENYSLFSWADKRQWETAQTPDRQISREGDWCRIGFEPVFVEYTKRGTWFIVISLVEWVALALVGVMVENSIVQLVLFCGLPSVIFLILMFLKPFAN 606          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8616.17650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN89_ECTSI2.550e-11152.07Liver stage antigen 3 n=1 Tax=Ectocarpus siliculos... [more]
D7G1L9_ECTSI3.380e-10449.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9C2_9PHAE1.980e-9843.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN93_ECTSI1.740e-9143.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWS4_ECTSI3.260e-9042.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5F3_ECTSI4.840e-8948.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD90_9PHAE3.260e-8740.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTJ3_9PHAE1.200e-8445.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG6_ECTSI6.790e-8443.88Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JR60_9PHAE1.250e-8342.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8616contigL-elsbetiae_contig8616:420..4179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D8LIK9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionliver stage antigen 3
Ec32 orthologEc-16_004090.1
Exons7
Model size1575
Cds size1575
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816943.8871658-CDS-L-elsbetiae_contig8616:419..5451622816943.8871658-CDS-L-elsbetiae_contig8616:419..545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 420..545 -
1691683930.6205215-CDS-L-elsbetiae_contig8616:419..5451691683930.6205215-CDS-L-elsbetiae_contig8616:419..545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 420..545 -
1622816943.8984497-CDS-L-elsbetiae_contig8616:739..10691622816943.8984497-CDS-L-elsbetiae_contig8616:739..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 740..1069 -
1691683930.6330822-CDS-L-elsbetiae_contig8616:739..10691691683930.6330822-CDS-L-elsbetiae_contig8616:739..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 740..1069 -
1622816943.9119132-CDS-L-elsbetiae_contig8616:1376..17721622816943.9119132-CDS-L-elsbetiae_contig8616:1376..1772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 1377..1772 -
1691683930.6562765-CDS-L-elsbetiae_contig8616:1376..17721691683930.6562765-CDS-L-elsbetiae_contig8616:1376..1772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 1377..1772 -
1622816943.9274247-CDS-L-elsbetiae_contig8616:2410..26631622816943.9274247-CDS-L-elsbetiae_contig8616:2410..2663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 2411..2663 -
1691683930.6670625-CDS-L-elsbetiae_contig8616:2410..26631691683930.6670625-CDS-L-elsbetiae_contig8616:2410..2663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 2411..2663 -
1622816943.9388418-CDS-L-elsbetiae_contig8616:3182..33791622816943.9388418-CDS-L-elsbetiae_contig8616:3182..3379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 3183..3379 -
1691683930.6790607-CDS-L-elsbetiae_contig8616:3182..33791691683930.6790607-CDS-L-elsbetiae_contig8616:3182..3379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 3183..3379 -
1622816943.949442-CDS-L-elsbetiae_contig8616:3683..38091622816943.949442-CDS-L-elsbetiae_contig8616:3683..3809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 3684..3809 -
1691683930.689138-CDS-L-elsbetiae_contig8616:3683..38091691683930.689138-CDS-L-elsbetiae_contig8616:3683..3809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 3684..3809 -
1622816943.9619014-CDS-L-elsbetiae_contig8616:4032..41791622816943.9619014-CDS-L-elsbetiae_contig8616:4032..4179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 4033..4179 -
1691683930.7011-CDS-L-elsbetiae_contig8616:4032..41791691683930.7011-CDS-L-elsbetiae_contig8616:4032..4179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8616 4033..4179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8616.17650.1prot_L-elsbetiae_contig8616.17650.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8616 420..4179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8616.17650.1

>prot_L-elsbetiae_contig8616.17650.1 ID=prot_L-elsbetiae_contig8616.17650.1|Name=mRNA_L-elsbetiae_contig8616.17650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=525bp
TPAPRPLPSAAPEIDGERVLPTDSSSFTPGPAVEDEFSTDGPSTAAPESQ
VSTPATVAAGAVSTLAVTGVIATTVSTLLGSTAAGVPPGVQGNPGARNPW
RPENAARGQNSGSSLRRPSATLAFVLIAQIQFLATLSLVSRTGAKDSSVS
SFADNVRWVNLWPPQSFAESFTPTGASGEESSAGGDQQEDGTERDASAGL
SSDISSAVFMGNLVLFAAILTGIYVVHIALASGVEAYWIAKKRAAEIFGR
ARSMNMPPSELLGLPSRRRIAHDPNADPSQRSFAVSASSGDGGGQAGGAD
EEGGLPVATRRGTRLNMKKIAECRERSQSAWLHFPHVELVFLLFAFEGAV
AAQVVAVRESASPLVVVLALSTLVLYPVLMIVLVSRSFVRKVRPNDDIVF
KVSSEGDENSDQSSNRGFAAKVKTSLKEDHSMFSWADKGQWESVETSDTE
VKQERDWFRIGFEPLFVDFTKKGSWFVVYTLIEWAALGVVGVVVDNSVLQ
LSLFCAMHSVSFILLVLFKPFANW*
back to top

mRNA from alignment at L-elsbetiae_contig8616:420..4179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8616.17650.1 ID=mRNA_L-elsbetiae_contig8616.17650.1|Name=mRNA_L-elsbetiae_contig8616.17650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3760bp|location=Sequence derived from alignment at L-elsbetiae_contig8616:420..4179- (Laminarionema elsbetiae ELsaHSoW15)
ACGCCAGCGCCCCGGCCGCTCCCATCGGCAGCGCCAGAAATCGATGGGGA GCGTGTTTTGCCCACCGACAGCAGCTCTTTCACGCCTGGGCCAGCGGTGG AGGACGAGTTCTCGACGGATGGGCCTTCGACAGCAGCGCCCGAATCTGTG GTGGAGCAAGAGGCACGTGGCCAACCAGATACTTTCGAATTTTGTATTTG GTGTAATTTTCCAGCTCTCGCCCGGGTAGTCAATGAGGAAAGTCGATCAA GTTGTTGTCTTCTATTTTTTTCATTTCCGAAGCAAAGGTATCCCCTTGCT GACACTCTATCACGTACCTGCTCCCACCCGTTTTTTGGGGTTTGTTTGCT CGATCCGTCTTCCCGCAAAGCAGGTTTCAACCCCAGCCACCGTTGCCGCT GGAGCGGTGTCTACCCTAGCCGTGACCGGCGTGATTGCCACGACGGTTTC AACCCTTCTCGGGAGCACTGCAGCTGGCGTTCCGCCGGGGGTGCAGGTGA GCCAACCCTTTCGCAGTCGTCGCAGTATGCGAACCAACAAACTCGAAATA TTGATGATCACAGCAACAACACGTAGTGCGAACGTCGAAGCTTTTCGCCT CAGCCCGCTCTCTGTGGCCATCCGCCTTGAAGAATTTCATTTTCGAAATC TATAGTTGATGCGGTCCGTCCGCACCACATCAACACACAGCGAGCCTTTC AGCAAGTAGGCCAATTCGGGCAAATACTCAAAAAACACCTGACACAGGTG GCAACCCTACTTTTTAAAACCATGTTTGGTTCTTTTGCCTAACCATACAG GGAAATCCGGGGGCAAGAAATCCATGGAGGCCCGAAAACGCCGCCCGGGG CCAAAACTCAGGCAGCAGCTTACGCCGTCCGTCGGCAACGCTGGCCTTCG TGCTGATCGCACAGATCCAGTTCCTTGCGACCCTGTCACTGGTGTCTCGT ACTGGGGCCAAGGACTCGAGCGTTTCAAGCTTTGCAGACAATGTCAGGTG AGCAACGTGTGGTGCCTTGTCGAGAAGCAGCAGTGTAGTTTTCATCCTTA TGCGAGGTTCGAGGTCCAGAGGGCAAGATCTCGAAGGCGGACCTCATTTT CCACGGACATGGTGCAGTACTTCCGCACCACACGCCCTCGTCGAGTCGGT AGAATCACGATGCCCTCCATGTGGGTGAAGCAAGTGGTAATGGGCGTGCA AAGTTTTTGCGACTCGGGCCTCCGAGACAAATGCCTGAGGCAGGAAATAA CCTCTTCCCCTGAAGAGAAGGAAGCCCTCCGTTGTGTTTTCTCGCGGAAG CATAGAGATAGCGGTTCTGCGCCAAACCGAACAGACAAGGTAAAATGGCC GCACAAAGAGTCCGCGTAAAACGCGCTCTCCCGGATTCGCCGTGCCTCTC TCTCTTGCCCGCCGGTTTGGCAGAAAGAATAGAACGGCATTGATCCCGGC GCCCCTTTTGCTTTTCCTCGGGGGTAATTTTACCTGCCGCTCCTCTGTCC GGTTGGCAACAAAAAGGTGGGTCAACCTCTGGCCTCCTCAGAGTTTCGCC GAGAGCTTCACCCCGACGGGGGCATCCGGCGAAGAAAGCTCCGCCGGCGG CGACCAACAAGAGGATGGCACCGAGCGTGACGCATCCGCGGGCTTGAGCA GCGATATCAGCTCCGCCGTGTTCATGGGCAACTTGGTGCTGTTCGCGGCG ATACTCACGGGAATCTACGTCGTCCACATTGCCTTGGCGTCCGGCGTCGA GGCCTACTGGATCGCGAAGGTACGGTTGGTCTCGAACGGAGTGTCCGCCC GCGAAACGTTGGGCTTTTTGGGTTCTTGTGGGGCGGATCAGGTCGAGAAT TTAACTAGGACAGCGGCCAACGAGTGGTTTCTTCTTTTGTGGCCTTCTTG GTGATGGGTTCTCGGACCGCGGTTGTAGTCGGTCGAAAATGCCGATTTTT CAAGCAACGGCGGCTTCGTTCGGTGCGATGGGCCTTCGGGAGTGATGGAT CTTTCGCGTTTGGCGTGGCGTTCGGGACTCTCGCAGAGAAGGGGGAGTTC CCTGCGCGACATGTGGGCTTGTTTCCCCGGTGTACATCGACCTTTCAGTC CTTCGACCTTTCAGTCCTTGCCCCATACTTATGGAATGCTGCCGCAGGTT TCGTTGCTTTCAGCGCCGTGAAAGAAGGAAGGTAACAGGTTCCCCCATGC CCTGGCCAATTGTGGATGGAAACGGCGCATAGCCCTGCTGCTCTCGTGTT GGCGGAGGTTCCGCATGGGGTTGTACCGCTTTGCTACGTGTCACGGTTGC TCGAAAACTTGAAAAGCGGCCCCTACAACCGTAGCCCCCACCACTCCGGC TCCTACAACCCCCGCCCCGACCACTCCGTCCGTTCCGTCCGTTTCACCCC CCCCCAGAAACGCGCCGCAGAAATATTTGGGAGAGCTCGGAGCATGAACA TGCCCCCCAGCGAGCTCTTGGGGCTCCCATCGAGGAGAAGGATCGCGCAC GATCCGAATGCTGACCCCTCTCAAAGATCGTTCGCGGTGAGCGCTTCGAG CGGGGACGGCGGGGGTCAAGCAGGCGGCGCGGACGAGGAAGGGGGACTGC CCGTGGCGACGCGTCGCGGCACGCGGCTGAACATGAAGAAGATAGCCGAG TGCCGGGAGAGGTCGCAGTCAGCGTGGCTTCACTTCCCGCACGTCGAGCT GGTGTTCCTGCTGTTCGCGTTCGAGGGCGCCGTGGCGGCGCAAGTGGTGG CCGTCCGCGAGAGCGCTTCCCCATTGGTCGTCGTCCTAGCGCTATCAACC TTGGTGAGCCTGCTTGGGTTTTTTGCTGGGGTGTTCTGCTACTACAGTAG CACCGGCGCTCAAACGCGCCAAGCTTACGGCACATGCTTGGCCGCGCACA GGTATTTCCGGGTTGGCAGGCGTAATTCGTTTTCCCGTGCTACCCACCTT TTGCTCCCCAAAGTTGCACGGGGCTGGCTCTCCGTTGCTTTACGAATTCC TTTATAGATGGTGAGAGTAGGCAAGCACTTCATGGAGGATACATCTTCGC TCCTGTCACGCTGACATGAGTTGCAATCGTCTGATTTCTCACACGTGTGT TGCTCTCCAGGTCCTCTATCCGGTCCTCATGATAGTGCTGGTTTCGCGAT CCTTCGTGAGAAAAGTGCGTCCCAACGACGACATCGTCTTCAAGGTTTCC TCTGAAGGCGACGAGAACAGCGACCAGAGCAGCAACCGCGGCTTCGCCGC CAAGGTCAAAACCAGCTTGAAAGAGGATCACAGCATGTTCTCCTGGGCAG ACAAGGGGCAGTGGGAGTCGGTGGAGACTTCGGACACAGAAGTCAAGCAA GAACGAGACTGGTTCAGGATTGGATTCGAGCCTCTGTTCGTCGATTTCAC CAAGAAAGGATCGTGGTTCGTCGTATACACTCTGATTGAGGTGGGTTGAT CTTTGTTGTGTTCACGACGATATGGTAGTTTTTCGTTGACCTCGGCTCCC TGCACGTGTGGCTTCTCCTTGAAGTCAAGTAACGCCGCTTTGATGACCCA CCTGGGAGCATTAGACAAACTCACTCCCCTCCCCAATCTTTAAGTGTCCT CGGCTTTGCGCCTGCTTTATTGTCGGCCGCGCAGTGGGCGGCCCTCGGCG TGGTCGGCGTCGTCGTGGACAACAGCGTGCTGCAGCTGTCCTTGTTCTGC GCGATGCACTCTGTGTCCTTTATTCTACTGGTACTCTTCAAGCCCTTCGC GAACTGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8616:420..4179-

>mRNA_L-elsbetiae_contig8616.17650.1 ID=mRNA_L-elsbetiae_contig8616.17650.1|Name=mRNA_L-elsbetiae_contig8616.17650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3150bp|location=Sequence derived from alignment at L-elsbetiae_contig8616:420..4179- (Laminarionema elsbetiae ELsaHSoW15)
ACGCCAGCGCCCCGGCCGCTCCCATCGGCAGCGCCAGAAATCGATGGGGA
GCGTGTTTTGCCCACCGACAGCAGCTCTTTCACGCCTGGGCCAGCGGTGG
AGGACGAGTTCTCGACGGATGGGCCTTCGACAGCAGCGCCCGAATCTACG
CCAGCGCCCCGGCCGCTCCCATCGGCAGCGCCAGAAATCGATGGGGAGCG
TGTTTTGCCCACCGACAGCAGCTCTTTCACGCCTGGGCCAGCGGTGGAGG
ACGAGTTCTCGACGGATGGGCCTTCGACAGCAGCGCCCGAATCTCAGGTT
TCAACCCCAGCCACCGTTGCCGCTGGAGCGGTGTCTACCCTAGCCGTGAC
CGGCGTGATTGCCACGACGGTTTCAACCCTTCTCGGGAGCACTGCAGCTG
GCGTTCCGCCGGGGGTGCAGCAGGTTTCAACCCCAGCCACCGTTGCCGCT
GGAGCGGTGTCTACCCTAGCCGTGACCGGCGTGATTGCCACGACGGTTTC
AACCCTTCTCGGGAGCACTGCAGCTGGCGTTCCGCCGGGGGTGCAGGGAA
ATCCGGGGGCAAGAAATCCATGGAGGCCCGAAAACGCCGCCCGGGGCCAA
AACTCAGGCAGCAGCTTACGCCGTCCGTCGGCAACGCTGGCCTTCGTGCT
GATCGCACAGATCCAGTTCCTTGCGACCCTGTCACTGGTGTCTCGTACTG
GGGCCAAGGACTCGAGCGTTTCAAGCTTTGCAGACAATGTCAGGGAAATC
CGGGGGCAAGAAATCCATGGAGGCCCGAAAACGCCGCCCGGGGCCAAAAC
TCAGGCAGCAGCTTACGCCGTCCGTCGGCAACGCTGGCCTTCGTGCTGAT
CGCACAGATCCAGTTCCTTGCGACCCTGTCACTGGTGTCTCGTACTGGGG
CCAAGGACTCGAGCGTTTCAAGCTTTGCAGACAATGTCAGGTGGGTCAAC
CTCTGGCCTCCTCAGAGTTTCGCCGAGAGCTTCACCCCGACGGGGGCATC
CGGCGAAGAAAGCTCCGCCGGCGGCGACCAACAAGAGGATGGCACCGAGC
GTGACGCATCCGCGGGCTTGAGCAGCGATATCAGCTCCGCCGTGTTCATG
GGCAACTTGGTGCTGTTCGCGGCGATACTCACGGGAATCTACGTCGTCCA
CATTGCCTTGGCGTCCGGCGTCGAGGCCTACTGGATCGCGAAGGTGGGTC
AACCTCTGGCCTCCTCAGAGTTTCGCCGAGAGCTTCACCCCGACGGGGGC
ATCCGGCGAAGAAAGCTCCGCCGGCGGCGACCAACAAGAGGATGGCACCG
AGCGTGACGCATCCGCGGGCTTGAGCAGCGATATCAGCTCCGCCGTGTTC
ATGGGCAACTTGGTGCTGTTCGCGGCGATACTCACGGGAATCTACGTCGT
CCACATTGCCTTGGCGTCCGGCGTCGAGGCCTACTGGATCGCGAAGAAAC
GCGCCGCAGAAATATTTGGGAGAGCTCGGAGCATGAACATGCCCCCCAGC
GAGCTCTTGGGGCTCCCATCGAGGAGAAGGATCGCGCACGATCCGAATGC
TGACCCCTCTCAAAGATCGTTCGCGGTGAGCGCTTCGAGCGGGGACGGCG
GGGGTCAAGCAGGCGGCGCGGACGAGGAAGGGGGACTGCCCGTGGCGACG
CGTCGCGGCACGCGGCTGAACATGAAGAAGATAGCCGAGTGCCGGGAGAG
GTCGCAGTCAGCGTGGCTTCACTTCCCGCACGTCGAGCTGGTGTTCCTGC
TGTTCGCGTTCGAGGGCGCCGTGGCGGCGCAAGTGGTGGCCGTCCGCGAG
AGCGCTTCCCCATTGGTCGTCGTCCTAGCGCTATCAACCTTGAAACGCGC
CGCAGAAATATTTGGGAGAGCTCGGAGCATGAACATGCCCCCCAGCGAGC
TCTTGGGGCTCCCATCGAGGAGAAGGATCGCGCACGATCCGAATGCTGAC
CCCTCTCAAAGATCGTTCGCGGTGAGCGCTTCGAGCGGGGACGGCGGGGG
TCAAGCAGGCGGCGCGGACGAGGAAGGGGGACTGCCCGTGGCGACGCGTC
GCGGCACGCGGCTGAACATGAAGAAGATAGCCGAGTGCCGGGAGAGGTCG
CAGTCAGCGTGGCTTCACTTCCCGCACGTCGAGCTGGTGTTCCTGCTGTT
CGCGTTCGAGGGCGCCGTGGCGGCGCAAGTGGTGGCCGTCCGCGAGAGCG
CTTCCCCATTGGTCGTCGTCCTAGCGCTATCAACCTTGGTCCTCTATCCG
GTCCTCATGATAGTGCTGGTTTCGCGATCCTTCGTGAGAAAAGTGCGTCC
CAACGACGACATCGTCTTCAAGGTTTCCTCTGAAGGCGACGAGAACAGCG
ACCAGAGCAGCAACCGCGGCTTCGCCGCCAAGGTCAAAACCAGCTTGAAA
GAGGATCACAGCATGTTCTCCTGGGCAGACAAGGGGCAGTGGGAGTCGGT
GGAGACTTCGGACACAGAAGTCAAGCAAGAACGAGACTGGTTCAGGATTG
GATTCGAGCCTCTGTTCGTCGATTTCACCAAGAAAGGATCGTGGTTCGTC
GTATACACTCTGATTGAGGTCCTCTATCCGGTCCTCATGATAGTGCTGGT
TTCGCGATCCTTCGTGAGAAAAGTGCGTCCCAACGACGACATCGTCTTCA
AGGTTTCCTCTGAAGGCGACGAGAACAGCGACCAGAGCAGCAACCGCGGC
TTCGCCGCCAAGGTCAAAACCAGCTTGAAAGAGGATCACAGCATGTTCTC
CTGGGCAGACAAGGGGCAGTGGGAGTCGGTGGAGACTTCGGACACAGAAG
TCAAGCAAGAACGAGACTGGTTCAGGATTGGATTCGAGCCTCTGTTCGTC
GATTTCACCAAGAAAGGATCGTGGTTCGTCGTATACACTCTGATTGAGTG
GGCGGCCCTCGGCGTGGTCGGCGTCGTCGTGGACAACAGCGTGCTGCAGC
TGTCCTTGTTCTGCGCGATGCACTCTGTGTCCTTTATTCTACTGGTACTC
TTCAAGCCCTTCGCGAACTGGTGATGGGCGGCCCTCGGCGTGGTCGGCGT
CGTCGTGGACAACAGCGTGCTGCAGCTGTCCTTGTTCTGCGCGATGCACT
CTGTGTCCTTTATTCTACTGGTACTCTTCAAGCCCTTCGCGAACTGGTGA
back to top