mRNA_L-elsbetiae_contig8587.17622.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8587.17622.1
Unique NamemRNA_L-elsbetiae_contig8587.17622.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8587.17622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8587contigL-elsbetiae_contig8587:7577..8497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8587.17622.1prot_L-elsbetiae_contig8587.17622.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8587 7616..8497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.5409615-UTR-L-elsbetiae_contig8587:7576..76151622816940.5409615-UTR-L-elsbetiae_contig8587:7576..7615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8587 7577..7615 -
1691683928.2721946-UTR-L-elsbetiae_contig8587:7576..76151691683928.2721946-UTR-L-elsbetiae_contig8587:7576..7615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8587 7577..7615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.551777-CDS-L-elsbetiae_contig8587:7615..76521622816940.551777-CDS-L-elsbetiae_contig8587:7615..7652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8587 7616..7652 -
1691683928.2852883-CDS-L-elsbetiae_contig8587:7615..76521691683928.2852883-CDS-L-elsbetiae_contig8587:7615..7652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8587 7616..7652 -
1622816940.5650394-CDS-L-elsbetiae_contig8587:8225..84971622816940.5650394-CDS-L-elsbetiae_contig8587:8225..8497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8587 8226..8497 -
1691683928.2979753-CDS-L-elsbetiae_contig8587:8225..84971691683928.2979753-CDS-L-elsbetiae_contig8587:8225..8497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8587 8226..8497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8587.17622.1

>prot_L-elsbetiae_contig8587.17622.1 ID=prot_L-elsbetiae_contig8587.17622.1|Name=mRNA_L-elsbetiae_contig8587.17622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MISLDEWPEREKKAEVILRGAQRNCRVASTAEGSTAVWHDQWKNGEIRDI
SLRKSPRAASQHPPTPLAARTHSTSESTSMSKFFDKSPAKKYSLSSCAPL
FP*
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mRNA from alignment at L-elsbetiae_contig8587:7577..8497-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8587.17622.1 ID=mRNA_L-elsbetiae_contig8587.17622.1|Name=mRNA_L-elsbetiae_contig8587.17622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=921bp|location=Sequence derived from alignment at L-elsbetiae_contig8587:7577..8497- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTCGCTAGATGAATGGCCGGAGCGGGAAAAAAAGGCCGAGGTTAT
TTTGCGCGGTGCCCAACGCAACTGCAGAGTAGCTTCAACAGCAGAAGGTT
CAACAGCAGTATGGCACGACCAGTGGAAAAACGGCGAAATACGGGACATT
TCTCTCAGAAAATCCCCGCGCGCTGCATCGCAGCACCCACCCACTCCACT
CGCTGCACGTACGCACTCGACATCTGAGAGCACATCCATGTCTAAGTTTT
TCGACAAGTCCCCAGCCAAAAAGCAAAAGCCCGCTGAGGAGACTGCCAGT
GGCGGCAGCGGGAGTGGCGGCTGTGATTCCGACGGGTTCAAATCCGTGGG
GGAGGTCTTTCCGGGTCGGATCTGCCCCGTCCATTTGGATACGAGTGAAA
CCTCTATGTTTTAGCTTTTGCCATAAGCACCCGGGTAACAACGTAGTGTT
GTACATTTGGCGATGTGCGAGCGTTTTCAATCATCTGGCCCTCATTAGGT
GTACCGTAAGCAATGTTACACGCAGTGAACGTTGTGAGGTTCCTTCTTGT
GCCATGCCCGGCGCAATTGGATACGAGCTATATATGTTTTCGCTTTTGCC
ATAAGCAGCCGAGTAACAACGTAGTGTTGCACATTTCGCCATGTAAGCGT
TTTCAATCATCTGTCTTTCATTAGTGGTACCGTAGGCAATTTTACCATAA
GCATGCTTGTGCTTTCCTTTTGCGCTCAAGGCGCCCGTTGCCTGTTGCCC
TATATATTTGCGATCCCAGCACCTTTGTAAGCATGGTGTCGTACGTTGTC
GCCATCCGGATTTGTATATTCTCATTTTCTCTTTGGCGCCTATAGGTATT
CTTTGTCTTCTTGCGCCCCATTATTTCCTTGAAACTATTGGTTTCCATCG
GTCCACTGTTTTCTCTGCATA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8587:7577..8497-

>mRNA_L-elsbetiae_contig8587.17622.1 ID=mRNA_L-elsbetiae_contig8587.17622.1|Name=mRNA_L-elsbetiae_contig8587.17622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig8587:7577..8497- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTCGCTAGATGAATGGCCGGAGCGGGAAAAAAAGGCCGAGGTTAT
TTTGCGCGGTGCCCAACGCAACTGCAGAGTAGCTTCAACAGCAGAAGGTT
CAACAGCAGTATGGCACGACCAGTGGAAAAACGGCGAAATACGGGACATT
TCTCTCAGAAAATCCCCGCGCGCTGCATCGCAGCACCCACCCACTCCACT
CGCTGCACGTACGCACTCGACATCTGAGAGCACATCCATGTCTAAGTTTT
TCGACAAGTCCCCAGCCAAAAAATGATTTCGCTAGATGAATGGCCGGAGC
GGGAAAAAAAGGCCGAGGTTATTTTGCGCGGTGCCCAACGCAACTGCAGA
GTAGCTTCAACAGCAGAAGGTTCAACAGCAGTATGGCACGACCAGTGGAA
AAACGGCGAAATACGGGACATTTCTCTCAGAAAATCCCCGCGCGCTGCAT
CGCAGCACCCACCCACTCCACTCGCTGCACGTACGCACTCGACATCTGAG
AGCACATCCATGTCTAAGTTTTTCGACAAGTCCCCAGCCAAAAAGTATTC
TTTGTCTTCTTGCGCCCCATTATTTCCTTGAGTATTCTTTGTCTTCTTGC
GCCCCATTATTTCCTTGA
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