mRNA_L-elsbetiae_contig858.17619.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig858.17619.1
Unique NamemRNA_L-elsbetiae_contig858.17619.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig858.17619.1 vs. uniprot
Match: D7G975_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G975_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.440e-29
Identity = 57/75 (76.00%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    4 APVAAAISTIVRAACYPKVVGYTEILEMLTHYDYTIDYTSDAGGHPETWGVEAGHGIISAGQMLAWVEANCSESC 228
            APVAAAI+TIVRAAC+P+VV Y E++EMLT+Y+YT+DYT+DA G  ETWG EAGHGIISA QMLAWVE NCSE+C
Sbjct:  187 APVAAAIATIVRAACFPRVVEYGEVMEMLTNYEYTVDYTNDADGAAETWGNEAGHGIISAAQMLAWVEENCSEAC 261
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig858.17619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G975_ECTSI1.440e-2976.00Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig858contigL-elsbetiae_contig858:22139..24308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D7G975
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionPeptidase S8/S53 domain
Ec32 orthologEc-13_002890.2
Exons3
Model size464
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig858.17619.1prot_L-elsbetiae_contig858.17619.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig858 22210..23251 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.1659489-UTR-L-elsbetiae_contig858:22138..222091622816940.1659489-UTR-L-elsbetiae_contig858:22138..22209Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 22139..22209 -
1691683928.007637-UTR-L-elsbetiae_contig858:22138..222091691683928.007637-UTR-L-elsbetiae_contig858:22138..22209Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 22139..22209 -
1622816940.2128918-UTR-L-elsbetiae_contig858:23251..232781622816940.2128918-UTR-L-elsbetiae_contig858:23251..23278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 23252..23278 -
1691683928.050789-UTR-L-elsbetiae_contig858:23251..232781691683928.050789-UTR-L-elsbetiae_contig858:23251..23278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 23252..23278 -
1622816940.2280564-UTR-L-elsbetiae_contig858:24251..243081622816940.2280564-UTR-L-elsbetiae_contig858:24251..24308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 24252..24308 -
1691683928.0616033-UTR-L-elsbetiae_contig858:24251..243081691683928.0616033-UTR-L-elsbetiae_contig858:24251..24308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig858 24252..24308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.1858525-CDS-L-elsbetiae_contig858:22209..223521622816940.1858525-CDS-L-elsbetiae_contig858:22209..22352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 22210..22352 -
1691683928.0217934-CDS-L-elsbetiae_contig858:22209..223521691683928.0217934-CDS-L-elsbetiae_contig858:22209..22352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 22210..22352 -
1622816940.1965947-CDS-L-elsbetiae_contig858:23085..232511622816940.1965947-CDS-L-elsbetiae_contig858:23085..23251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 23086..23251 -
1691683928.0323617-CDS-L-elsbetiae_contig858:23085..232511691683928.0323617-CDS-L-elsbetiae_contig858:23085..23251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig858 23086..23251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig858.17619.1

>prot_L-elsbetiae_contig858.17619.1 ID=prot_L-elsbetiae_contig858.17619.1|Name=mRNA_L-elsbetiae_contig858.17619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MLTHYDYTIDYTSDAGGHPETWGVEAGHGIISAGQMLAWVEANCSESCPL
GNNSQDCTSDDDCDTHDDGDDDHDDHYDHYDDDHSDDYNDDGEDDSDDHY
DH*
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mRNA from alignment at L-elsbetiae_contig858:22139..24308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig858.17619.1 ID=mRNA_L-elsbetiae_contig858.17619.1|Name=mRNA_L-elsbetiae_contig858.17619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2170bp|location=Sequence derived from alignment at L-elsbetiae_contig858:22139..24308- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCCGGTGGCTGCCGCCATATCGACGATTGTGAGGGCTGCGTGCTA
CCCCAAGGTAGGTGGGACCGAGACGCTGCAATAGTGCCCAGAAACCGTTC
CAGAACCACACCACCGATGGCGCTGTACAGTAGGCACTTCGTGCATCTCG
CCGAGTCTTTCAAGCGAAGACGCTTTCGTGAACCAACCGTTGTGTATGGT
ACTTGCTCCAAGGTTCTTCCCCAAACGGTATTTTGTTTGGCCACTGTAGT
TCGCTAGACCAACGCGAAACCCGGACTCTAAGAACACCGCTGACACCGAC
AGGCTGCCATGACCTAAACTACAGTAGTAGTATCAGCTCTCCTTCCGAAC
GCACCGCAAGAATACCAACATAGATGTGGTGGACTGCATTTTATTAGCAA
GGTTTTCGCGGGAGGTTATCGCGAGATTGAGAGCGAATCCCATGATTATC
GAGAGTCATAACCAAAACAATCGATTTTCTCGTCAGTTTCGTAATCAATC
GTCGTTTCGTGGGGGGTAATGCGCCGAGCTGGTCAAGGAGCAGCTCAAAC
GAAACCTCTTACCCATATACCACATTTGTTTTTACGTTCCCCTAGATACC
TTTTATGAATCGACCCAAACTGATCCGTAGCAATGGGAAGTGTAATATTT
TCTTGAAAATAGATTCAAGCCCGCCAGCCTGACGCCCGGAAGTACCCTAC
CCCAGCCTATAGGGCCCTTGTCTGAGGTAACTTGCCAACAATACACCGAT
TGCTTGGAGTGAGGTATCGGGCTGTAGCTATGTATGAGCACACCGAGATC
GTCCAAGCAGTAAAAGAAGAACAATTAGACGTAGGAGAAACTAGAGCAAT
CTCAGGATTCGCTCTGAATCTCGCGAAAACCTTGTGATTTCTTCAATACG
CCAATATCAACTACATTGGAAAGCCTAATATCTATAGATACGCCAAACGT
ATCTGATACTCACAGGGAAATGGCTTCCGATCGTGCATTGAATCATACCT
CGTATTATTGTGTGTTCTCCAACAACCCAGGTTGTGGGATACACGGAAAT
ACTGGAGATGCTGACGCACTACGACTACACCATAGACTACACCAGCGATG
CCGGAGGCCATCCTGAGACGTGGGGGGTAGAAGCCGGACACGGAATCATC
TCCGCCGGCCAGATGCTCGCATGGGTAGAAGCCAACTGTTCTGAGTCCTG
CCCTCTCGGCAACAACAGTCAAGGTACGGACGGTACAGCTACATAAATAG
TGGATGTTGGTTGGCCACGGCCGCCCATCAGGAGTTAATTAGCCTGGGGG
GGGGGGGGGGGGGGGCACGAGCCCCCGGTTGGGTTGGCCCAAGAGGGGGG
GGGGAGAAAAAGAGGGGGGGGGGAAAAAAAGGCGGGCGCGGGGGGNNNNN
NNNNNGGGGCGGCAGGCGACCAAAAGGGAGAGGAAGGAGGGGGGGGGGGG
GGGGGGGGGGGGGCTACATAGCTCCGATTGAGTTCGTCCAAACGATGGGA
TGGCAAAAAGAAGGGCGCAGGCAAGAAACAGCGGCACTTCCGGGCAGGTC
GCAACTGTGTATGGCGTTAGTCTAGCTAGACCTAGAGGGGTAGTCCCATC
ATTTTCTCGCTCATCGATAACCGCGGCCGCTCGTTTTGAACGCCGCCTAC
AGTATGTACGAAGGCGTAGGTGGATGGGCATTGCAGGAAGGGATACGTTT
GAAACCGGGACTGAGATACTTTTTCTTTCTCGGCAACACATGGACCCGCG
CTTCTATTCTTCACCTACATATTTACCTGAAAAAGGATGTGTAGTTGATT
GCCTTCGAAAAAAAGGGTGTTCAACACTTATTTTGCGAAACAGTGGACCA
GCCCGATGCCTACGTGCAACACCCGATGCGCGGAGAGAGAGAAATCTGGA
CTAATATTACTGCGGGGCTTCATTGGGTGTTTTTTTCTGCTGATCGCCTC
TTCCAGACTGCACTAGTGACGACGACTGCGACACGCACGACGACGGTGAT
GACGACCACGACGACCACTACGACCACTACGATGACGACCATAGCGACGA
TTACAACGATGACGGCGAAGATGACAGCGACGACCACTACGACCACTAGA
AGTTGAAAACTTATTGAGGGTCCTACGAGGAGCAGTGCTTGGACGTCTCG
TGGCGTGAGCATGAATGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig858:22139..24308-

>mRNA_L-elsbetiae_contig858.17619.1 ID=mRNA_L-elsbetiae_contig858.17619.1|Name=mRNA_L-elsbetiae_contig858.17619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig858:22139..24308- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGACGCACTACGACTACACCATAGACTACACCAGCGATGCCGGAGG
CCATCCTGAGACGTGGGGGGTAGAAGCCGGACACGGAATCATCTCCGCCG
GCCAGATGCTCGCATGGGTAGAAGCCAACTGTTCTGAGTCCTGCCCTCTC
GGCAACAACAGTCAAGATGCTGACGCACTACGACTACACCATAGACTACA
CCAGCGATGCCGGAGGCCATCCTGAGACGTGGGGGGTAGAAGCCGGACAC
GGAATCATCTCCGCCGGCCAGATGCTCGCATGGGTAGAAGCCAACTGTTC
TGAGTCCTGCCCTCTCGGCAACAACAGTCAAGACTGCACTAGTGACGACG
ACTGCGACACGCACGACGACGGTGATGACGACCACGACGACCACTACGAC
CACTACGATGACGACCATAGCGACGATTACAACGATGACGGCGAAGATGA
CAGCGACGACCACTACGACCACTAGACTGCACTAGTGACGACGACTGCGA
CACGCACGACGACGGTGATGACGACCACGACGACCACTACGACCACTACG
ATGACGACCATAGCGACGATTACAACGATGACGGCGAAGATGACAGCGAC
GACCACTACGACCACTAG
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