mRNA_L-elsbetiae_contig8579.17616.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8579.17616.1
Unique NamemRNA_L-elsbetiae_contig8579.17616.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: A0A7S0RT69_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RT69_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 5.770e-9
Identity = 22/47 (46.81%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 NNVAVLDTERWHWRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQH 141
            N+V +LDT+  +W  P I+G  P PR++HSAT+VGN ++++GG + H
Sbjct:  103 NDVYILDTKNRNWSKPEIEGEAPVPRAHHSATLVGNQILIYGGYSGH 149          
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: A0A1Y1V244_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V244_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 5.350e-8
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    7 VAVLDTERWHWRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQHESFDKIHVLD 171
            +A     R+ W   T  G  P+PR YH++T+VGN ++V+GG++ HE F +I +LD
Sbjct:  320 IATNPRLRYVWTKITTTGKAPSPRGYHTSTLVGNKVIVYGGSDGHECFSEIFILD 374          
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: A0A1Y3MZ53_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MZ53_PIRSE)

HSP 1 Score: 56.2 bits (134), Expect = 9.480e-8
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   28 RWHWRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQHESFDKIHVLD 171
            R+ W   T  G  P+PR YH++T+VGN ++V+GG++ HE F +I +LD
Sbjct:  166 RYVWTKITTTGKAPSPRGYHTSTLVGNKVIVYGGSDGHECFSEIFILD 213          
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: A0A8H7Q0H6_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q0H6_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 1.370e-7
Identity = 23/55 (41.82%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   13 VLDTERWHWRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQHESFDKIHVLDTS 177
            ++D     W++    G  P PR YH+A +VG+ +VVFGG++ HE F  +HV D S
Sbjct:  354 LMDPANLRWQNLLPAGQVPVPRGYHTANLVGDKLVVFGGSDGHECFSDVHVCDLS 408          
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: S8DQ84_FOMPI (Uncharacterized protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8DQ84_FOMPI)

HSP 1 Score: 55.1 bits (131), Expect = 2.560e-7
Identity = 27/61 (44.26%), Postives = 35/61 (57.38%), Query Frame = 1
Query:    1 NNVAVLD----TERWHWRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQHESFDKIHVLD 171
            N++  LD    TER  W H    G  P PR YH+A +VGN+MVV GG++  E F  I  L+
Sbjct:  333 NDLWTLDCTGPTERMRWEHVETRGRRPLPRGYHTANLVGNVMVVVGGSDGRECFSDIWCLN 393          
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: A0A507BRQ2_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BRQ2_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 4.780e-7
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   37 WRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQHESFDKIHVLD 171
            W      G +P PR YH++T+VG+ +VV+GG++ HE F  IH+LD
Sbjct:  303 WSKLATTGRSPVPRGYHTSTLVGSTVVVYGGSDGHECFSDIHLLD 347          
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: A0A1S3JPK1_LINUN (acyl-CoA-binding domain-containing protein 5 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JPK1_LINUN)

HSP 1 Score: 54.3 bits (129), Expect = 4.790e-7
Identity = 23/57 (40.35%), Postives = 33/57 (57.89%), Query Frame = 1
Query:    1 NNVAVLDTERWHWRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQHESFDKIHVLD 171
            N + +       W +P + G  P PRS HSAT++G+ +VVFGG +    F  IH+LD
Sbjct:  334 NEIEIFSPVMESWYNPIVTGEKPEPRSGHSATIIGDQLVVFGGWDFPVCFSDIHILD 390          
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: A0A8H7Q2Z5_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q2Z5_MORIS)

HSP 1 Score: 54.3 bits (129), Expect = 4.790e-7
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 1
Query:   13 VLDTERWHWRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQHESFDKIHVLD 171
            +LD     W +    G  P PR YH+A +VG+ +VV+GG++ HE F  +HV D
Sbjct:  345 LLDQNSLRWNNLNPGGHVPVPRGYHTANLVGDKLVVYGGSDGHECFSDVHVCD 397          
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: A0A7S4D5B4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5B4_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 5.900e-7
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 1
Query:    7 VAVLDTERWHWRHPTIDGSNPAP--RSYHSATVVGNLMVVFGGNNQHESFDKIHVLDTS 177
            V  +DTERW W         P P  R+YH+ATVV + +V FGG+N    F+ + VLD S
Sbjct:   63 VECMDTERWTWMEKITISGGPVPKGRTYHTATVVQDKIVFFGGSNYASVFNDLFVLDLS 121          
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Match: A0A165DNQ8_9APHY (Galactose oxidase n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165DNQ8_9APHY)

HSP 1 Score: 53.9 bits (128), Expect = 6.220e-7
Identity = 27/61 (44.26%), Postives = 34/61 (55.74%), Query Frame = 1
Query:    1 NNVAVLD----TERWHWRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQHESFDKIHVLD 171
            N+V  LD    TER  W      G  PA R YH+A +VGN+MVV GG++  E F  +  LD
Sbjct:  144 NDVWTLDVSGPTERMRWEQVETRGKRPAARGYHTANLVGNVMVVVGGSDGRECFQDVWCLD 204          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8579.17616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0RT69_9CHLO5.770e-946.81Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A1Y1V244_9FUNG5.350e-841.82Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A1Y3MZ53_PIRSE9.480e-845.83Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]
A0A8H7Q0H6_9FUNG1.370e-741.82Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
S8DQ84_FOMPI2.560e-744.26Uncharacterized protein n=1 Tax=Fomitopsis pinicol... [more]
A0A507BRQ2_9FUNG4.780e-746.67Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A1S3JPK1_LINUN4.790e-740.35acyl-CoA-binding domain-containing protein 5 n=2 T... [more]
A0A8H7Q2Z5_MORIS4.790e-741.51Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A7S4D5B4_HETAK5.900e-744.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A165DNQ8_9APHY6.220e-744.26Galactose oxidase n=1 Tax=Laetiporus sulphureus 93... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8579contigL-elsbetiae_contig8579:5320..5496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue6.7e-10
Seed eggNOG ortholog2850.Phatr32786
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816940.1314392-CDS-L-elsbetiae_contig8579:5319..54961622816940.1314392-CDS-L-elsbetiae_contig8579:5319..5496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8579 5320..5496 -
1691683927.9900568-CDS-L-elsbetiae_contig8579:5319..54961691683927.9900568-CDS-L-elsbetiae_contig8579:5319..5496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8579 5320..5496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8579.17616.1prot_L-elsbetiae_contig8579.17616.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8579 5320..5496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8579.17616.1

>prot_L-elsbetiae_contig8579.17616.1 ID=prot_L-elsbetiae_contig8579.17616.1|Name=mRNA_L-elsbetiae_contig8579.17616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
NNVAVLDTERWHWRHPTIDGSNPAPRSYHSATVVGNLMVVFGGNNQHESF
DKIHVLDTS
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mRNA from alignment at L-elsbetiae_contig8579:5320..5496-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8579.17616.1 ID=mRNA_L-elsbetiae_contig8579.17616.1|Name=mRNA_L-elsbetiae_contig8579.17616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=177bp|location=Sequence derived from alignment at L-elsbetiae_contig8579:5320..5496- (Laminarionema elsbetiae ELsaHSoW15)
AACAACGTCGCGGTCCTCGACACGGAGCGCTGGCACTGGCGCCACCCCAC CATCGACGGCTCCAACCCCGCGCCCCGCTCGTACCACAGCGCCACCGTGG TGGGGAACCTGATGGTGGTCTTCGGCGGGAACAACCAGCACGAGAGCTTC GACAAGATCCATGTCTTGGACACAAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8579:5320..5496-

>mRNA_L-elsbetiae_contig8579.17616.1 ID=mRNA_L-elsbetiae_contig8579.17616.1|Name=mRNA_L-elsbetiae_contig8579.17616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig8579:5320..5496- (Laminarionema elsbetiae ELsaHSoW15)
AACAACGTCGCGGTCCTCGACACGGAGCGCTGGCACTGGCGCCACCCCAC
CATCGACGGCTCCAACCCCGCGCCCCGCTCGTACCACAGCGCCACCGTGG
TGGGGAACCTGATGGTGGTCTTCGGCGGGAACAACCAGCACGAGAGCTTC
GACAAGATCCATGTCTTGGACACAAGTAACAACGTCGCGGTCCTCGACAC
GGAGCGCTGGCACTGGCGCCACCCCACCATCGACGGCTCCAACCCCGCGC
CCCGCTCGTACCACAGCGCCACCGTGGTGGGGAACCTGATGGTGGTCTTC
GGCGGGAACAACCAGCACGAGAGCTTCGACAAGATCCATGTCTTGGACAC
AAGT
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