mRNA_L-elsbetiae_contig8565.17602.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8565.17602.1
Unique NamemRNA_L-elsbetiae_contig8565.17602.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8565.17602.1 vs. uniprot
Match: D7FQN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN6_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 9.930e-68
Identity = 189/326 (57.98%), Postives = 211/326 (64.72%), Query Frame = 1 
Query:    1 MVNRSQLEGLLEVVPPSLLFATPPSRAHAEGGI----AXXXXXXXXADPSGTSLPRSLDDAGAEGEASVRSAPVGGSRKRLDSCDGXXXXXXXXXXXXLDEMKRRCSLVEVSLRASRREALEARRARDVAENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELRLGHLRRAESDLSDQADANARLREELRLASARLAAAAAARRALVGFCRQERAAVEALAAEQAARAEESAGMRGEEGLARGLELAGVAEELGERRAAGLGLEVDRLGKALFASRSRLARSEAGAQGLRRELERAAETIVGLSRDAIAAS 966
            M  RSQLEGLLEVVPPS L + P  +A+    +    A        AD    SL R  D A  E  A    APVGG      S   XXXXXXXXXX  L+E++RRCS++EVSLRASRREALEARR+RD AE                                            LELRLG LR+AE+DLSDQADAN+RL EELR A ARL  A+ AR ALV FCRQER +VE LAAE+ A AEESAGMRGE+GLARGLELA +AEELG++RAAGL LEVDRLGKALFASR+ LA SEA  QGLRRELERAAETIVGLSR AIA+S
Sbjct:  397 MSLRSQLEGLLEVVPPSPL-SGPSPKANGSASLPRQEAAGSAVTVAADSRVASLERPPDPASDE-VAPAGPAPVGGHA----SGXXXXXXXXXXXXGGLNEIRRRCSMLEVSLRASRREALEARRSRDSAETTVRQQSGALAKLQERVSALEASLAKEQEAGQGASQAASGLEAELELRLGQLRKAEADLSDQADANSRLTEELRGALARLRTASTARAALVDFCRQERESVEMLAAERVALAEESAGMRGEDGLARGLELARMAEELGDKRAAGLELEVDRLGKALFASRAELAGSEARVQGLRRELERAAETIVGLSRSAIASS 716
[Close]
BLAST of mRNA_L-elsbetiae_contig8565.17602.1 vs. uniprot
Match: A0A6H5KSE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE0_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.710e-59
Identity = 138/219 (63.01%), Postives = 153/219 (69.86%), Query Frame = 1 
Query:  310 LVEVSLRASRREALEARRARDVAENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELRLGHLRRAESDLSDQADANARLREELRLASARLAAAAAARRALVGFCRQERAAVEALAAEQAARAEESAGMRGEEGLARGLELAGVAEELGERRAAGLGLEVDRLGKALFASRSRLARSEAGAQGLRRELERAAETIVGLSRDAIAAS 966
            ++EVSLRASRREALE RR+RD AE                                            LELRLG LR+AE+DLSDQADAN+RL EELR A ARL  A+ AR ALV FCRQER +VE LAAE+ A AEESAGMRGEEGLARGLELA +AEELG++RAAGL LEVDRLGKALFASR+ LA SEA  QGLRREL+RAAETIVGLSR AIA+S
Sbjct:    1 MLEVSLRASRREALEVRRSRDSAETTVRQQRGALAKLQERVSALEASLAKEQEAGKGASQAASGLEAELELRLGQLRKAEADLSDQADANSRLTEELREALARLGTASTARAALVDFCRQERESVELLAAERVAVAEESAGMRGEEGLARGLELARMAEELGDKRAAGLELEVDRLGKALFASRAELAGSEARVQGLRRELDRAAETIVGLSRSAIASS 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8565.17602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQN6_ECTSI9.930e-6857.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSE0_9PHAE2.710e-5963.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8565contigL-elsbetiae_contig8565:6235..8201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001010.1
Exons3
Model size1293
Cds size1293
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8565.17602.1prot_L-elsbetiae_contig8565.17602.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8565 6235..8201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816939.2841415-CDS-L-elsbetiae_contig8565:6234..70501622816939.2841415-CDS-L-elsbetiae_contig8565:6234..7050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8565 6235..7050 -
1691683927.3928692-CDS-L-elsbetiae_contig8565:6234..70501691683927.3928692-CDS-L-elsbetiae_contig8565:6234..7050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8565 6235..7050 -
1622816939.3025799-CDS-L-elsbetiae_contig8565:7658..79131622816939.3025799-CDS-L-elsbetiae_contig8565:7658..7913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8565 7659..7913 -
1691683927.4080005-CDS-L-elsbetiae_contig8565:7658..79131691683927.4080005-CDS-L-elsbetiae_contig8565:7658..7913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8565 7659..7913 -
1622816939.3177447-CDS-L-elsbetiae_contig8565:7979..82011622816939.3177447-CDS-L-elsbetiae_contig8565:7979..8201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8565 7980..8201 -
1691683927.4181092-CDS-L-elsbetiae_contig8565:7979..82011691683927.4181092-CDS-L-elsbetiae_contig8565:7979..8201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8565 7980..8201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8565.17602.1

>prot_L-elsbetiae_contig8565.17602.1 ID=prot_L-elsbetiae_contig8565.17602.1|Name=mRNA_L-elsbetiae_contig8565.17602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=431bp
MVNRSQLEGLLEVVPPSLLFATPPSRAHAEGGIAAAAAAAAAADPSGTSL
PRSLDDAGAEGEASVRSAPVGGSRKRLDSCDGGGGGGDEGGGGGLDEMKR
RCSLVEVSLRASRREALEARRARDVAENTVRQQREELTRLKERVSGLEAS
VEREKEAGKGASQAASGLEAELELRLGHLRRAESDLSDQADANARLREEL
RLASARLAAAAAARRALVGFCRQERAAVEALAAEQAARAEESAGMRGEEG
LARGLELAGVAEELGERRAAGLGLEVDRLGKALFASRSRLARSEAGAQGL
RRELERAAETIVGLSRDAIAASASASAAASAAASAATATAGGGGGGGGGG
GGGNGREVSPSSRAERSGGLTDEEALLTGNRMGSSSSSAAAAAAAAAAAG
GGEAGAGKTPGVVEGGDKGGGSSSNSKSSPT
back to top

mRNA from alignment at L-elsbetiae_contig8565:6235..8201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8565.17602.1 ID=mRNA_L-elsbetiae_contig8565.17602.1|Name=mRNA_L-elsbetiae_contig8565.17602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1967bp|location=Sequence derived from alignment at L-elsbetiae_contig8565:6235..8201- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAACAGATCTCAGCTGGAAGGGCTCCTCGAGGTTGTTCCTCCGTC
GCTTCTGTTCGCCACGCCCCCTTCGAGGGCGCACGCAGAAGGAGGCATCG
CTGCTGCTGCCGCTGCTGCCGCTGCTGCCGACCCGAGCGGTACATCGCTG
CCACGGTCGCTGGACGACGCGGGCGCAGAAGGAGAGGCTTCCGTAAGGTC
AGCGCCGGTGGGTGGCAGCCGCGTAGAGGAGGACAGAGCCCCCGGTGCGG
AACGTGGGGCCGATGCGAGAGAAGGAGCCTTGCTCCAGAAACGCTTGGAC
AGTTGCGATGGTGGCGGCGGCGGTGGAGACGAGGGGGGGGGTGGGGGTCT
CGACGAGATGAAGAGGCGTTGTTCGTTGGTGGAGGTTTCGTTGCGAGCCT
CGCGGAGGGAAGCGCTGGAGGCTCGCCGAGCGAGGGACGTGGCCGAGAAC
ACGGTCAGGCAGCAGAGGGAGGAACTGACGAGGTTAAAGGAGAGAGTCTC
CGGGCTGGAGGCGTCTGTGGAAAGGGAGAAAGAAGCTGGCAAGGTGCGTT
TTGATTTGTTTTCTTCTGAGGACACAGGCTCCTGTCTAGGACAGATGCCG
GTGCCGTTGCAGTATTCACCCACTGCCAAGGGCGGCTGATCTTCTTCCGT
GATATGTACGAGGAGAGAGAGGTAGAAAAGAAGTGGCACCCGGGGCAAGA
GGGGAGTCGAAGACTCCCCGAATCTGCCCTCGGTAATTGGCCCGGGACTA
CGGAAGATACGAATCTCTTTCTGTGCATTTCTTGTCACTCTCTCGATGGC
AAGTTGCCCCTATGGGGCCATATCTTCCTACGAGTGTGTCCTCCATACTT
CGCCTTATCTGCGAACGAACGAGCGTGCACACCCCCGTTGTTTCTGGGAT
GTGTGTTTATACTCCTCCTTTAAGTTTCGTGCTCCGTGCTGTTTGACGGC
GCACATACATACACCTAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCAGG
CGACGAATATGCCAATAATGGGAGGAGAAATAAATAAATATATATATAGT
CTATATATCTTGGGAGCGTTTCTAATTTTGCGTCGCTTATCCCCGCTCCT
CCTGCTGCGCAACTGGTGTATTTATAAACCAACCGATACCTACTCTTCAA
GGGGGCGTCGCAAGCGGCGAGCGGCCTGGAGGCCGAGCTCGAGCTCCGCC
TCGGCCACCTGCGCCGCGCCGAGTCCGACCTCTCCGACCAGGCCGACGCC
AATGCCCGGCTGAGGGAGGAGCTGCGGCTCGCGTCGGCCCGCCTCGCCGC
CGCCGCCGCCGCCCGGCGAGCCCTCGTCGGGTTCTGCCGGCAGGAGCGGG
CGGCGGTCGAGGCGCTCGCTGCCGAGCAGGCCGCGCGCGCCGAGGAGAGC
GCCGGGATGCGCGGGGAGGAGGGGCTCGCGAGGGGCCTGGAGCTGGCGGG
GGTGGCGGAGGAGCTGGGGGAGCGGCGGGCGGCGGGGCTGGGGCTGGAGG
TGGACCGGCTCGGGAAGGCCCTGTTCGCCTCCCGCTCCCGGCTGGCCCGG
AGCGAGGCGGGGGCGCAGGGGCTGCGGAGGGAGCTGGAGCGGGCGGCGGA
GACCATCGTCGGGCTGAGTAGGGACGCCATCGCCGCTTCCGCTTCCGCTT
CCGCCGCCGCTTCCGCCGCCGCTTCCGCTGCCACTGCCACCGCGGGGGGA
GGAGGAGGAGGAGGAGGAGGAGGCGGGGGGGGAAATGGGAGAGAGGTGAG
CCCTTCCTCTCGGGCGGAACGCTCGGGGGGTCTCACGGATGAGGAGGCGT
TGTTGACAGGCAACCGCATGGGATCATCATCATCATCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGGCGGCGGGGAGGCTGGTGCCGGGAAGAC
CCCCGGAGTGGTCGAGGGGGGAGACAAGGGAGGAGGAAGCTCGAGTAATA
GCAAGAGCTCCCCGACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8565:6235..8201-

>mRNA_L-elsbetiae_contig8565.17602.1 ID=mRNA_L-elsbetiae_contig8565.17602.1|Name=mRNA_L-elsbetiae_contig8565.17602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2586bp|location=Sequence derived from alignment at L-elsbetiae_contig8565:6235..8201- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAACAGATCTCAGCTGGAAGGGCTCCTCGAGGTTGTTCCTCCGTC
GCTTCTGTTCGCCACGCCCCCTTCGAGGGCGCACGCAGAAGGAGGCATCG
CTGCTGCTGCCGCTGCTGCCGCTGCTGCCGACCCGAGCGGTACATCGCTG
CCACGGTCGCTGGACGACGCGGGCGCAGAAGGAGAGGCTTCCGTAAGGTC
AGCGCCGGTGGGTGGCAGCCGCATGGTCAACAGATCTCAGCTGGAAGGGC
TCCTCGAGGTTGTTCCTCCGTCGCTTCTGTTCGCCACGCCCCCTTCGAGG
GCGCACGCAGAAGGAGGCATCGCTGCTGCTGCCGCTGCTGCCGCTGCTGC
CGACCCGAGCGGTACATCGCTGCCACGGTCGCTGGACGACGCGGGCGCAG
AAGGAGAGGCTTCCGTAAGGTCAGCGCCGGTGGGTGGCAGCCGCAAACGC
TTGGACAGTTGCGATGGTGGCGGCGGCGGTGGAGACGAGGGGGGGGGTGG
GGGTCTCGACGAGATGAAGAGGCGTTGTTCGTTGGTGGAGGTTTCGTTGC
GAGCCTCGCGGAGGGAAGCGCTGGAGGCTCGCCGAGCGAGGGACGTGGCC
GAGAACACGGTCAGGCAGCAGAGGGAGGAACTGACGAGGTTAAAGGAGAG
AGTCTCCGGGCTGGAGGCGTCTGTGGAAAGGGAGAAAGAAGCTGGCAAGA
AACGCTTGGACAGTTGCGATGGTGGCGGCGGCGGTGGAGACGAGGGGGGG
GGTGGGGGTCTCGACGAGATGAAGAGGCGTTGTTCGTTGGTGGAGGTTTC
GTTGCGAGCCTCGCGGAGGGAAGCGCTGGAGGCTCGCCGAGCGAGGGACG
TGGCCGAGAACACGGTCAGGCAGCAGAGGGAGGAACTGACGAGGTTAAAG
GAGAGAGTCTCCGGGCTGGAGGCGTCTGTGGAAAGGGAGAAAGAAGCTGG
CAAGGGGGCGTCGCAAGCGGCGAGCGGCCTGGAGGCCGAGCTCGAGCTCC
GCCTCGGCCACCTGCGCCGCGCCGAGTCCGACCTCTCCGACCAGGCCGAC
GCCAATGCCCGGCTGAGGGAGGAGCTGCGGCTCGCGTCGGCCCGCCTCGC
CGCCGCCGCCGCCGCCCGGCGAGCCCTCGTCGGGTTCTGCCGGCAGGAGC
GGGCGGCGGTCGAGGCGCTCGCTGCCGAGCAGGCCGCGCGCGCCGAGGAG
AGCGCCGGGATGCGCGGGGAGGAGGGGCTCGCGAGGGGCCTGGAGCTGGC
GGGGGTGGCGGAGGAGCTGGGGGAGCGGCGGGCGGCGGGGCTGGGGCTGG
AGGTGGACCGGCTCGGGAAGGCCCTGTTCGCCTCCCGCTCCCGGCTGGCC
CGGAGCGAGGCGGGGGCGCAGGGGCTGCGGAGGGAGCTGGAGCGGGCGGC
GGAGACCATCGTCGGGCTGAGTAGGGACGCCATCGCCGCTTCCGCTTCCG
CTTCCGCCGCCGCTTCCGCCGCCGCTTCCGCTGCCACTGCCACCGCGGGG
GGAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGGGGAAATGGGAGAGAGGT
GAGCCCTTCCTCTCGGGCGGAACGCTCGGGGGGTCTCACGGATGAGGAGG
CGTTGTTGACAGGCAACCGCATGGGATCATCATCATCATCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGCGGCGGGGAGGCTGGTGCCGGGAA
GACCCCCGGAGTGGTCGAGGGGGGAGACAAGGGAGGAGGAAGCTCGAGTA
ATAGCAAGAGCTCCCCGACGGGGGCGTCGCAAGCGGCGAGCGGCCTGGAG
GCCGAGCTCGAGCTCCGCCTCGGCCACCTGCGCCGCGCCGAGTCCGACCT
CTCCGACCAGGCCGACGCCAATGCCCGGCTGAGGGAGGAGCTGCGGCTCG
CGTCGGCCCGCCTCGCCGCCGCCGCCGCCGCCCGGCGAGCCCTCGTCGGG
TTCTGCCGGCAGGAGCGGGCGGCGGTCGAGGCGCTCGCTGCCGAGCAGGC
CGCGCGCGCCGAGGAGAGCGCCGGGATGCGCGGGGAGGAGGGGCTCGCGA
GGGGCCTGGAGCTGGCGGGGGTGGCGGAGGAGCTGGGGGAGCGGCGGGCG
GCGGGGCTGGGGCTGGAGGTGGACCGGCTCGGGAAGGCCCTGTTCGCCTC
CCGCTCCCGGCTGGCCCGGAGCGAGGCGGGGGCGCAGGGGCTGCGGAGGG
AGCTGGAGCGGGCGGCGGAGACCATCGTCGGGCTGAGTAGGGACGCCATC
GCCGCTTCCGCTTCCGCTTCCGCCGCCGCTTCCGCCGCCGCTTCCGCTGC
CACTGCCACCGCGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGGG
GAAATGGGAGAGAGGTGAGCCCTTCCTCTCGGGCGGAACGCTCGGGGGGT
CTCACGGATGAGGAGGCGTTGTTGACAGGCAACCGCATGGGATCATCATC
ATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCGGGG
AGGCTGGTGCCGGGAAGACCCCCGGAGTGGTCGAGGGGGGAGACAAGGGA
GGAGGAAGCTCGAGTAATAGCAAGAGCTCCCCGACG
back to top