mRNA_L-elsbetiae_contig8564.17599.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8564.17599.1
Unique NamemRNA_L-elsbetiae_contig8564.17599.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8564.17599.1 vs. uniprot
Match: A0A6H5KLI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI5_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 3.500e-62
Identity = 132/227 (58.15%), Postives = 155/227 (68.28%), Query Frame = 1 
Query:   13 QYWKPGERKPRDGGSGP----------GERNESGNGSTGNGKXXXXXXXHDE--KNSTSSSINRSGS-AKKRGKKSKGKDADNS-SPLGGIEAKVSRSAAKPPVAGPSQGLLAMKFMQRKVKADEAQQQQQAKRDKLERDFSSSYAKRLKADMTMTNDEDR-LVCRLDELDPALVVIGRRSFGGFNTVAETAYNACVRDIAAGERLGLLRHGREDGGGGISDTEMAE 648
            QYWKPGE++P  G  G            +R   G G T + K        DE  + ST     RS   AKKR +K KGK+  ++ S LGGI+ +VSR+A+KPPVAGPSQGLLAMKFMQRK +ADEAQ+Q+Q KR+KLE DFSSSYAKRLKAD     D  + L+CR DE DPALVV+GRRSFGGFN VAE AY+AC+RDI AGERLG    G + GG GISDTEMAE
Sbjct:    2 QYWKPGEKRPGGGEGGXXXXXXXXXXXSDRVSDGQGRT-DSKKRVDKSRRDEGGRGSTDKGNRRSSEGAKKRVRKGKGKERHSTGSGLGGIKGEVSRAASKPPVAGPSQGLLAMKFMQRKAQADEAQKQRQEKREKLESDFSSSYAKRLKADKDTGKDRRKVLICRRDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERLGRPGRGEDAGGDGISDTEMAE 227
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BLAST of mRNA_L-elsbetiae_contig8564.17599.1 vs. uniprot
Match: D8LLK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK6_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 7.570e-60
Identity = 111/157 (70.70%), Postives = 129/157 (82.17%), Query Frame = 1 
Query:  181 KKRGKKSKGKDADNSSP-LGGIEAKVSRSAAKPPVAGPSQGLLAMKFMQRKVKADEAQQQQQAKRDKLERDFSSSYAKRLKADMTMTNDEDRLVCRLDELDPALVVIGRRSFGGFNTVAETAYNACVRDIAAGERLGLLRHGREDGGGGISDTEMAE 648
            KKR KK KGK+  ++   LGGI+ +VSR+A+KPPVAGPSQGLLAMKFMQRKV+ADEAQ+Q+Q KR+KLE  FSSSYAKRLKAD      +DRL+CR DE DPALVV+GRRSFGGFN VAE AY+AC+RDI AGER+G    G + GGGGISDTEMAE
Sbjct:   73 KKRVKKGKGKERHSTGGGLGGIKGEVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLESYFSSSYAKRLKADKD--TGKDRLICRHDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERIGRPGRGEDAGGGGISDTEMAE 227
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8564.17599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLI5_9PHAE3.500e-6258.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLK6_ECTSI7.570e-6070.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8564contigL-elsbetiae_contig8564:1326..4521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionM-phase phosphoprotein 6
Ec32 orthologEc-04_005450.1
Exons3
Model size654
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8564.17599.1prot_L-elsbetiae_contig8564.17599.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8564 1326..4521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816939.1434214-CDS-L-elsbetiae_contig8564:1325..16401622816939.1434214-CDS-L-elsbetiae_contig8564:1325..1640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8564 1326..1640 +
1691683927.2887332-CDS-L-elsbetiae_contig8564:1325..16401691683927.2887332-CDS-L-elsbetiae_contig8564:1325..1640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8564 1326..1640 +
1622816939.1561646-CDS-L-elsbetiae_contig8564:3156..32931622816939.1561646-CDS-L-elsbetiae_contig8564:3156..3293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8564 3157..3293 +
1691683927.2993176-CDS-L-elsbetiae_contig8564:3156..32931691683927.2993176-CDS-L-elsbetiae_contig8564:3156..3293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8564 3157..3293 +
1622816939.1676745-CDS-L-elsbetiae_contig8564:4319..45211622816939.1676745-CDS-L-elsbetiae_contig8564:4319..4521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8564 4320..4521 +
1691683927.3095286-CDS-L-elsbetiae_contig8564:4319..45211691683927.3095286-CDS-L-elsbetiae_contig8564:4319..4521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8564 4320..4521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8564.17599.1

>prot_L-elsbetiae_contig8564.17599.1 ID=prot_L-elsbetiae_contig8564.17599.1|Name=mRNA_L-elsbetiae_contig8564.17599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
METAQYWKPGERKPRDGGSGPGERNESGNGSTGNGKKEESGGGHDEKNST
SSSINRSGSAKKRGKKSKGKDADNSSPLGGIEAKVSRSAAKPPVAGPSQG
LLAMKFMQRKVKADEAQQQQQAKRDKLERDFSSSYAKRLKADMTMTNDED
RLVCRLDELDPALVVIGRRSFGGFNTVAETAYNACVRDIAAGERLGLLRH
GREDGGGGISDTEMAET*
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mRNA from alignment at L-elsbetiae_contig8564:1326..4521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8564.17599.1 ID=mRNA_L-elsbetiae_contig8564.17599.1|Name=mRNA_L-elsbetiae_contig8564.17599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3196bp|location=Sequence derived from alignment at L-elsbetiae_contig8564:1326..4521+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGACGGCACAGTACTGGAAGCCCGGAGAGCGGAAGCCGCGGGATGG
AGGGAGTGGGCCGGGAGAGCGCAACGAGAGCGGCAACGGCAGCACGGGCA
ACGGGAAGAAGGAAGAGAGTGGGGGGGGTCACGATGAGAAGAACAGCACC
AGCAGCAGTATAAATCGCAGTGGGAGCGCCAAAAAGAGAGGAAAGAAGTC
AAAGGGGAAGGATGCAGACAACAGCAGCCCGCTCGGTGGCATCGAGGCCA
AGGTCTCGCGATCTGCCGCTAAGCCGCCGGTGGCCGGACCATCACAGGGC
CTGTTAGCGATGAAGGTGTGCACGAGGGTGTTGTGATATTTGTTTACTTG
GTCAGGGCGGCGCGTAGACCTGTGAAGCGAAAGACAGGGAAAAAGAGGAG
TCTGTCCGTTGCTGGTACTTGGCTGCGAAACTCTGCGTTCTTCGAGGCCA
CTGAAAATTATGTAGCTGAAAATCGGCCCGTGTCACAGGTCACAGGCCCA
CATTCGGTGCACACATGGCTTGATATTTTCTACTGCTTTAGATGGAGCCG
TAAAAAACAGAGTAGAGCATCAAGTGAATAACTCGCCACAATGTAGCAAG
CACAAGTGTAGGAATAGGCTTGTATACCTATGTATGTAGCATTTCCCCAA
CATGCATACATACAGGGTCCGTCCGGTTAAATTTTCCCACAATTTCCAAA
ATCACTCAAGGATTAATTGATGTGGACTGACATAACCTCTGGGGGCATAC
TATAATATCGTTTGAAAGCTCTCTTTCAAGCGGATCGAATTATTGTATCA
GATTTTTCGTGTAGTGTTTGGGTGGCGAGTAAATCGCGAAACCGTCGTGA
ATTTTGGAAATTTTGTTATGTTTTTTGGGAAGAAATGAACCGATTAAATA
TAAAAAACTCCACGGATTTGGGCGAATTGGGCCTATCCCTAGGACCGTTC
TTTTCCATTCTAAAAAAATATATATTTGAGCGAGGTACGGGCGAAAAACC
TGTATTTAAGACAGCTCCGTGTTATGTTTTTAGGGAAGAAATGAACCGAT
AGAATTTAAAAAACTCGACGGATTCGGAAGAATTGGACCTGTCCCCAGGA
CCGTTTTTCTTCTTTTTTCCCAATTTTTTTTTGAGCAAGATATGGACTGT
CGATGTCGGTCGATGCTTGTGAACCAAAAACAGCGATTTCTCAACCCGTC
GCCCGGACAATATTTGAAAAATGTTTCGGTCACACGTGGTTGTACTCGTT
ACGGGGAGCTCGGAACGCCTTTTATTTTTCTTCAGCTCGTTGGCGTTCGC
TCACAATGACTCATTGAAAATCTCCCCAAAATCGAGCTGTATCGTTCCAA
TTTTTACCAAATCACTTGATGTTAGTATAGGTCCCGACCGGAAAGTGCTC
CAATGTCCAATCACCCCACTAAATATGATGCCCTATGCCAACACCGTCAC
AAAACACCTTGTTTTATTTTCTAACTCCCAAAATTGAGCGAGAAAAAGTG
GGGGTCACGTTGTGGGAAAATTTAACCGGACGGACTATATGTGGTTGAAC
CACGACGTCTCAAATCTGTTCAAGGGCGCGGGTGTCCGTTCATGTTTCCT
CTTCCTGCGTTGATGAGTTTGTAGATGATGGTGTGGCGTGACAGATGTTT
CATCACGACACCACCCACCCATCATGTGTAACAATCGACGTACGTTTGAG
GTGGTTGGAATGTGAAAATAACTAAGAGCTTCTTCATCGTGTCGTATTTT
TGTCGTGCTTGACGACATCTCGATTGTCACGGCACGGTCGTCCACTTTTC
GCTGGCATTTACCCCTCCTGTCTTACCACAGTTTATGCAGCGCAAGGTAA
AAGCGGACGAGGCTCAGCAGCAGCAGCAGGCCAAAAGGGACAAGCTGGAG
AGGGACTTCAGCTCGTCGTACGCGAAACGGCTCAAGGCCGACATGACCAT
GACCAACGACGAAGATCGGTGAGTCAGTCCGCTTCGAGCACCACCGTACC
CGCCCCCCGCGAGCGGACAGCGCTTGTGTGGTCAGTGCGAGACACACTCA
GCCACCAGCCCCCGACAGCATCGCTAGACGATGCCACATGGTATGAGATA
TTTCTGCTGTCCTGCTGAGGTTATGCTGTGTGCTACAGAGCAGTCGTATA
GTTGGTAGGCCGTCCATAGTCCACGCTTGCGGTTACGCTTTTTTTGCTCT
GGGGAGACAAGAAAGAAAGGAGTTTCTGTTGTAAACACCATTCGCCGGCG
GTATCGCGACCGCACACCGGGAGACCGGATCGCCCTAACTTGTCGTATTT
CCAGCAGAGTCATCTTGGCCTAATCATGTGAAAATTCGACCCTTTCCGAC
TCGAAACTCCGGGCGGCAGTAAGTATGTGTGTATATACATATGATATCTA
TGTACAACATATTTTCAAATTCCGCCAAAGAACTACCTCTCGACATTTTT
TAGATGTCATACGGAAGTTATCATTCCCACACTATGTCCCAACACATCAT
ACTACATACCACCCTTCCCAATCCTGGCTATTGTCTTATCACTACCACTA
ATACCACTAACATTGTATTTTCTCCTCAAAAGCAGTAACCCACATATATT
AAACCAGCATTTTGATTTAGTTCAACAATGCGATGTGTTCCTATTTTGGA
GTAGATGACAACACTACGGCATCACGGCGGGCTCTACCCGCTTGAATAAT
TGTTGGCCGACCTCGCAAATCTTAAAATCTTTGCAGGGGAGATGTTGAAC
TCTTGTGATATTTTAGGTTGTTTTTCTGCTCGCTTCGCCAAATATGACGT
CACTGCTGTATGGAATACCGTTTGAACCCCATATCGAGTCCTTGCTCTAG
TGTGGGGTAGGTTCCATCTTTGATTCATTGTTTATTTAAAAAAAACAGAC
CGCTCACATGCAGGCGACATACATCCACGCACCAACTTGGATCTCAATCG
CCATCGATGACGGTGCCGCCAACACTGTTTGTCTGTACCACCAGGCTCGT
CTGTCGACTGGACGAGCTAGACCCGGCACTGGTGGTGATCGGGAGGAGGT
CGTTCGGGGGTTTCAACACCGTGGCGGAGACCGCCTACAACGCGTGCGTC
AGAGATATTGCGGCCGGGGAGAGATTAGGGCTGCTGCGGCACGGGCGCGA
GGATGGTGGTGGCGGTATATCGGACACGGAGATGGCGGAGACGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8564:1326..4521+

>mRNA_L-elsbetiae_contig8564.17599.1 ID=mRNA_L-elsbetiae_contig8564.17599.1|Name=mRNA_L-elsbetiae_contig8564.17599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig8564:1326..4521+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGACGGCACAGTACTGGAAGCCCGGAGAGCGGAAGCCGCGGGATGG
AGGGAGTGGGCCGGGAGAGCGCAACGAGAGCGGCAACGGCAGCACGGGCA
ACGGGAAGAAGGAAGAGAGTGGGGGGGGTCACGATGAGAAGAACAGCACC
AGCAGCAGTATAAATCGCAGTGGGAGCGCCAAAAAGAGAGGAAAGAAGTC
AAAGGGGAAGGATGCAGACAACAGCAGCCCGCTCGGTGGCATCGAGGCCA
AGGTCTCGCGATCTGCCGCTAAGCCGCCGGTGGCCGGACCATCACAGGGC
CTGTTAGCGATGAAGATGGAGACGGCACAGTACTGGAAGCCCGGAGAGCG
GAAGCCGCGGGATGGAGGGAGTGGGCCGGGAGAGCGCAACGAGAGCGGCA
ACGGCAGCACGGGCAACGGGAAGAAGGAAGAGAGTGGGGGGGGTCACGAT
GAGAAGAACAGCACCAGCAGCAGTATAAATCGCAGTGGGAGCGCCAAAAA
GAGAGGAAAGAAGTCAAAGGGGAAGGATGCAGACAACAGCAGCCCGCTCG
GTGGCATCGAGGCCAAGGTCTCGCGATCTGCCGCTAAGCCGCCGGTGGCC
GGACCATCACAGGGCCTGTTAGCGATGAAGTTTATGCAGCGCAAGGTAAA
AGCGGACGAGGCTCAGCAGCAGCAGCAGGCCAAAAGGGACAAGCTGGAGA
GGGACTTCAGCTCGTCGTACGCGAAACGGCTCAAGGCCGACATGACCATG
ACCAACGACGAAGATCGTTTATGCAGCGCAAGGTAAAAGCGGACGAGGCT
CAGCAGCAGCAGCAGGCCAAAAGGGACAAGCTGGAGAGGGACTTCAGCTC
GTCGTACGCGAAACGGCTCAAGGCCGACATGACCATGACCAACGACGAAG
ATCGGCTCGTCTGTCGACTGGACGAGCTAGACCCGGCACTGGTGGTGATC
GGGAGGAGGTCGTTCGGGGGTTTCAACACCGTGGCGGAGACCGCCTACAA
CGCGTGCGTCAGAGATATTGCGGCCGGGGAGAGATTAGGGCTGCTGCGGC
ACGGGCGCGAGGATGGTGGTGGCGGTATATCGGACACGGAGATGGCGGAG
ACGTGAGCTCGTCTGTCGACTGGACGAGCTAGACCCGGCACTGGTGGTGA
TCGGGAGGAGGTCGTTCGGGGGTTTCAACACCGTGGCGGAGACCGCCTAC
AACGCGTGCGTCAGAGATATTGCGGCCGGGGAGAGATTAGGGCTGCTGCG
GCACGGGCGCGAGGATGGTGGTGGCGGTATATCGGACACGGAGATGGCGG
AGACGTGA
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