mRNA_L-elsbetiae_contig8558.17589.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8558.17589.1
Unique NamemRNA_L-elsbetiae_contig8558.17589.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: D8LTJ1_ECTSI (DFRP_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ1_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 6.870e-100
Identity = 203/241 (84.23%), Postives = 213/241 (88.38%), Query Frame = 1 
Query:    1 QKYITTVQKSVNSTEQQRAIDAAKNKKMAGKEAKKAQEAELAALFDEALLTGVKKGGAAGKGKAPAVAVETKAKVVQETIVIEEGEKTLEDLIEEQRAKLHKEGKKARSGQGRGTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAVDNDTMKQRNDEEDGEGXXXXXXXXXXXXXXXXXXXXXX-GVAVKEALFEGDDEDLDDLDDEEGA 720
            QKYI+TVQKSVNSTEQQRA DAAK+KKMA KEAKKAQEAELAALFDEALLTGVKKGG AGKGK PAVAVETKAK VQET VIEEGEKTLED+IEEQR KLH+EGK+       GTPVN+ETLAKWKADRKAKKLAEERRKVQAEM+KK+KGKGLSVLSGRALYDYDA LF DDADAVDNDTMKQRND      XXXXXXXXXXXXXXXXXX     GV V+EALFEGDDEDLDDLDD+EGA
Sbjct:   37 QKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKTPAVAVETKAKQVQETFVIEEGEKTLEDMIEEQRTKLHREGKQ-------GTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVDNDTMKQRNDXXXXXXXXXXXXXXXXXXXXXXXXGGVPAGVKVEEALFEGDDEDLDDLDDDEGA 270
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: A0A835ZLI2_9STRA (DFRP_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLI2_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.280e-33
Identity = 110/248 (44.35%), Postives = 138/248 (55.65%), Query Frame = 1 
Query:    1 QKYITTVQKSVNSTEQQRAIDAAKNKKMAGKEAKKAQEAELAALFDEALLTGVKKGGAAG-KGKAP-AVAVETKAKVVQETIVI-EEGEKTLEDLIEEQRAKLHKEGKKARSGQGRGTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAVDNDTMKQRNDEEDGEGXXXXXXXXXXXXXXXXXXXXXXGVAVKEALFEGDDED--LDDLDDEEGA*DA 729
            Q+Y+ TV+K+V ++      +A K K+          E E+ ALF+EAL+ G K   A G KG  P  VAV+T+ K VQET V+ EE EKT+EDLIEEQRAKL  EGK        GTPV  ETLA WKA R A +  EERR V+ EM KK K KGL+VLSGRAL+DYDA+LF DD DA   +    R +  D +                       GV  ++   E DD+D  LDDLD+ +   D 
Sbjct:   32 QQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKA-------GTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVD-QDLFLEADDDDIELDDLDESDAVDDG 271
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: A0A7S3M6K0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6K0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.580e-17
Identity = 80/209 (38.28%), Postives = 114/209 (54.55%), Query Frame = 1 
Query:    1 QKYITTVQKSVNSTEQQRAIDAAKNKKMA--GKEAKKAQEAELAALFDEALLTGVKKGGAAGKGKAPAVAVETKAKVV-----------------------------QETIVIEEGEKTLEDLIEEQRAKLHKEGKKARSGQGRGTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAVD 534
            Q++I  V+KSV +  Q    DAAK K+M    K A++ QE EL  LF+E +     K  +A   KA A+ +  ++K +                             + T++  E  KT+ED+IEEQRAKL  EGKK       GTPV  E+ A W+  + A+K AE   +V+AE+ KK  GKGLSVLSG+ L++Y+++LFVDD  A+D
Sbjct:   53 QQFINRVEKSVKN--QNGGADAAKAKEMKKENKLAQQLQEEELRILFNEGIANQFGKKKSAAAAKAGALGLTEQSKEIAAFMEGISSDDSDDESDNDEGPIFIDDEPEATVIFRE--KTIEDIIEEQRAKLAAEGKK-------GTPVTAESFATWRTAKLAQKQAEAEARVKAELTKKKGGKGLSVLSGKELFNYNSSLFVDDDGAID 250
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: A0A7S1BEE4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEE4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.010e-16
Identity = 86/239 (35.98%), Postives = 122/239 (51.05%), Query Frame = 1 
Query:   70 KNKKMAGKEAKKAQEAELAALFDEALL-----TGVKKGG---AAGKGKAPAVAVETKAKVVQETIVIEEGE------------KTLEDLIEEQR-AKLHKEGKKARSGQGR-GTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAVDNDTMKQRNDEEDGEGXXXXXXXXXXXXXXXXXXXXXXGVAVKEALF---EGDDEDLDDLDDE 711
            K KK A K  +KA + E  ALF EAL+     T VKK G   A G+    A + +T ++ ++    ++  E             TLED IE QR AKL     KA    GR GTP+ EE+L  W+  ++ +K  E ++ V+ E++KK  GKGLSVLSGRALY Y+  LFVDD +A D + + +R   +DG                          +++  LF   + DD+DLDDLD++
Sbjct:   67 KQKKSAAKAMRKAADQEREALFGEALMAVSKKTSVKKKGENSAIGRDGGDAASKKTTSRAMKMMYQMDAKELEDKFKDDPDYVPTLEDEIESQRQAKL-----KALEKSGRKGTPITEESLKAWQERKRRRKAEEAKKLVETELKKKKGGKGLSVLSGRALYSYNKKLFVDDENAEDKNDIAEREKADDG---------------VTDDDVKEAAASIQSDLFLNGDHDDDDLDDLDED 285
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: A0A7S2KI75_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KI75_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.230e-15
Identity = 65/152 (42.76%), Postives = 87/152 (57.24%), Query Frame = 1 
Query:  259 KTLEDLIEEQRAKLHKEGKKARSGQGRGTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAVDNDTMKQRNDEEDGEGXXXXXXXXXXXXXXXXXXXXXXGVAVKEALF-EGDDEDLDDLDDE 711
            +TLED +E QR K+  + KK  SG+ +GTPV EETL  W+  ++ K+L E ++ V+AE RKK  GKGLSVLSGRALY+Y+ +LF DD  A DN+T +                                   V+  LF EGDD+DLDDL+D+
Sbjct:  153 RTLEDEVEAQRQKMFDDFKK--SGK-KGTPVTEETLKIWQDKKRKKRLEEAKKLVEAESRKKKGGKGLSVLSGRALYEYNKSLFKDDEAANDNETPESA------------------VANKKVDSVDEVAEKVQSDLFLEGDDDDLDDLEDD 283
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: A0A7S1VVP4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVP4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.150e-13
Identity = 95/266 (35.71%), Postives = 133/266 (50.00%), Query Frame = 1 
Query:    7 YITTVQKSV-NSTE-QQRAIDAAKNKKMA-GKEAKKAQEAELAALFDEALLTGVKKGG-------------------AAGKGKAPAVAVETKAKVVQETIVIEEGE-KTLEDLIEEQR----AKLHKEGKKARSGQGRGTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVD---DADAVDNDTMKQRNDEEDGEGXXXXXXXXXXXXXXXXXXXXXXGVAVKEALF-EGDDEDLDDLDDE 711
            ++ +V+KSV NS + + R ++  + K+ A  K  +KA + E  ALFDEALL   KKG                     AG  +A  +  +  AK ++E +  +     TLED IE +R    A+L + GK        GTPV EE+   W+  ++ +K  E R+KV+AE++KK  GKGLSVLSGRALY+Y   LFVD   D  AV      +   EE+G                           V+E LF EGDD+DLDDLD++
Sbjct:   44 HVKSVEKSVLNSGDPRMRRLEEQRTKQKAEAKARRKAAKQEQQALFDEALLAVQKKGKNLKAGKVSAQGRDGDDDKKKAGTSRAMKMMYQMDAKEMEERLRDDPNYVPTLEDNIEAERQRKLAELKESGKT-------GTPVTEESFRAWQERKRKRKADEARKKVEAELKKKKGGKGLSVLSGRALYEYKKELFVDKDEDGAAV---VSPKSIPEENGNSVDHVAEK------------------VEENLFLEGDDDDLDDLDED 281
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: A0A7S2R4K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4K8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.420e-13
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:  262 TLEDLIEEQRAKLHKEGKKARSGQGRGTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAVDNDTMKQRND--EEDGE 576
            TLE +IE QRAK+  EG+        GTPV EETLAKW+ DR  ++      +V AE+RKK  GKGL+VLSG+ L+ YD +LFVDD +A D D  ++ +D  EE+GE
Sbjct:  162 TLEQVIELQRAKMRSEGRV-------GTPVTEETLAKWREDRAERRRQANAERVAAELRKKKGGKGLAVLSGKDLFTYDRSLFVDD-EAADIDEYERTSDAGEEEGE 260
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: A0A6T6H7B8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6H7B8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.190e-13
Identity = 91/261 (34.87%), Postives = 126/261 (48.28%), Query Frame = 1 
Query:    1 QKYITTVQKSVNSTEQQRAIDAAKNKKMAG--KEAKKAQEAELAALFDEALL-------TGVKKGGAAGKGK----APAVAVETKAKVVQETIVIEEGEK----------TLEDLIEEQRAKLHKEGKKARSGQGRGTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAVDNDTMKQRNDEEDGEGXXXXXXXXXXXXXXXXXXXXXXGVAVKEALF-EGDDEDLDDLDDE 711
            Q++I +V K V S +++  ++  K K+M    K  KKA+EAE  ALF EALL       T  K G    KG+      A    ++A  +   +  +E E           TLED IE +R K   E KK+    G+GT V  E+ A WK  ++ ++  E R+KV+AE +KK  GKGL++LSGR L++Y   LF  D D  D    KQ +D                               V+  LF EGDD+DLDDLDD+
Sbjct:   41 QQHIQSVTKQVMSVDRRTRMEEEKRKQMRKDHKLRKKAEEAERNALFGEALLAVKKKKTTNQKDGKQEAKGRDGNDESAKKGTSRAMKMMYQMDAQEMEDRLKEDPNYVPTLEDEIESERQKKVAELKKS----GQGTKVTPESFAAWKEKKRKRRAEEARKKVEAEFKKKKGGKGLAILSGRDLFEYKRELF--DKDLEDGAADKQVDD---------------------------VAAKVQSDLFLEGDDDDLDDLDDD 268
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: A0A448Z365_9STRA (DFRP_C domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z365_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.230e-13
Identity = 61/155 (39.35%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:  262 TLEDLIEEQR----AKLHKEGKKARSGQGRGTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAVDNDTMKQRNDEEDGEGXXXXXXXXXXXXXXXXXXXXXXGVAVKEALF-EGDDEDLDDLDDE 711
            TLED IE +R    A+L K GKK       GTP+  E+ A W  +++ ++ AE ++ V+ EMRKK  GKGL+VLSGRALYDY  +LF  +++   N+T  Q N +E+                            V+  LF +GDD+ LDDLDDE
Sbjct:  185 TLEDEIEAERQKKVAELKKNGKK-------GTPITAESFAIWAQNKRKRRAAEAKKMVEQEMRKKKGGKGLAVLSGRALYDYKRDLFNIESENASNETSDQDNSKEN--------------------PVDQVATQVQSDLFLDGDDDSLDDLDDE 312
[Close]
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Match: A0A7S2BQG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.130e-12
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:  262 TLEDLIEEQRAKLHKEGKKARSGQGRGTPVNEETLAKWKADRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAVD 534
            TLE +IE +RAK+  EG+        GTPV EE+LA+WK+DR+ ++      KV+AEM+KK  GKGLSVLSG+ L+ Y+ +LFVDD +A D
Sbjct:  161 TLEQIIELERAKMRAEGRI-------GTPVTEESLARWKSDREERRRLANIAKVEAEMKKKKGGKGLSVLSGKDLFAYNQSLFVDDEEADD 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8558.17589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTJ1_ECTSI6.870e-10084.23DFRP_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835ZLI2_9STRA2.280e-3344.35DFRP_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S3M6K0_9STRA2.580e-1738.28Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1BEE4_9STRA2.010e-1635.98Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2KI75_9STRA1.230e-1542.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1VVP4_9STRA1.150e-1335.71Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2R4K8_9STRA1.420e-1350.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6T6H7B8_9STRA3.190e-1334.87Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A448Z365_9STRA4.230e-1339.35DFRP_C domain-containing protein n=1 Tax=Pseudo-ni... [more]
A0A7S2BQG9_9STRA1.130e-1251.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8558contigL-elsbetiae_contig8558:1079..8189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.2
Seed ortholog evalue5e-71
Seed eggNOG ortholog2880.D8LTJ1
Preferred nameZC3H15
KEGG koko:K03243,ko:K06185
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0002181,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0023052,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0033036,GO:0034097,GO:0034613,GO:0034641,GO:0034645,GO:0042221,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.cytokine-mediated signaling pathway
EggNOG OGsCOG5252@1,KOG1763@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03012
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005810.1
Exons7
Model size1348
Cds size642
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816937.9611511-UTR-L-elsbetiae_contig8558:1078..17031622816937.9611511-UTR-L-elsbetiae_contig8558:1078..1703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8558 1079..1703 -
1691683926.3321352-UTR-L-elsbetiae_contig8558:1078..17031691683926.3321352-UTR-L-elsbetiae_contig8558:1078..1703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8558 1079..1703 -
1622816938.0621448-UTR-L-elsbetiae_contig8558:8108..81891622816938.0621448-UTR-L-elsbetiae_contig8558:8108..8189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8558 8109..8189 -
1691683926.4349911-UTR-L-elsbetiae_contig8558:8108..81891691683926.4349911-UTR-L-elsbetiae_contig8558:8108..8189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8558 8109..8189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816937.9721465-CDS-L-elsbetiae_contig8558:1703..18201622816937.9721465-CDS-L-elsbetiae_contig8558:1703..1820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 1704..1820 -
1691683926.3507001-CDS-L-elsbetiae_contig8558:1703..18201691683926.3507001-CDS-L-elsbetiae_contig8558:1703..1820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 1704..1820 -
1622816937.9828825-CDS-L-elsbetiae_contig8558:2897..29901622816937.9828825-CDS-L-elsbetiae_contig8558:2897..2990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 2898..2990 -
1691683926.3621643-CDS-L-elsbetiae_contig8558:2897..29901691683926.3621643-CDS-L-elsbetiae_contig8558:2897..2990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 2898..2990 -
1622816937.998073-CDS-L-elsbetiae_contig8558:3924..40171622816937.998073-CDS-L-elsbetiae_contig8558:3924..4017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 3925..4017 -
1691683926.3760378-CDS-L-elsbetiae_contig8558:3924..40171691683926.3760378-CDS-L-elsbetiae_contig8558:3924..4017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 3925..4017 -
1622816938.0103333-CDS-L-elsbetiae_contig8558:5949..60301622816938.0103333-CDS-L-elsbetiae_contig8558:5949..6030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 5950..6030 -
1691683926.387543-CDS-L-elsbetiae_contig8558:5949..60301691683926.387543-CDS-L-elsbetiae_contig8558:5949..6030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 5950..6030 -
1622816938.023008-CDS-L-elsbetiae_contig8558:6529..67031622816938.023008-CDS-L-elsbetiae_contig8558:6529..6703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 6530..6703 -
1691683926.3970563-CDS-L-elsbetiae_contig8558:6529..67031691683926.3970563-CDS-L-elsbetiae_contig8558:6529..6703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 6530..6703 -
1622816938.0362546-CDS-L-elsbetiae_contig8558:7432..75011622816938.0362546-CDS-L-elsbetiae_contig8558:7432..7501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 7433..7501 -
1691683926.4122941-CDS-L-elsbetiae_contig8558:7432..75011691683926.4122941-CDS-L-elsbetiae_contig8558:7432..7501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 7433..7501 -
1622816938.0480886-CDS-L-elsbetiae_contig8558:8093..81081622816938.0480886-CDS-L-elsbetiae_contig8558:8093..8108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 8094..8108 -
1691683926.4254675-CDS-L-elsbetiae_contig8558:8093..81081691683926.4254675-CDS-L-elsbetiae_contig8558:8093..8108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8558 8094..8108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8558.17589.1prot_L-elsbetiae_contig8558.17589.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8558 1704..8108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8558.17589.1

>prot_L-elsbetiae_contig8558.17589.1 ID=prot_L-elsbetiae_contig8558.17589.1|Name=mRNA_L-elsbetiae_contig8558.17589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=214bp
MAGKEAKKAQEAELAALFDEALLTGVKKGGAAGKGKAPAVAVETKAKVVQ
ETIVIEEGEKTLEDLIEEQRAKLHKEGKKARSGQGRGTPVNEETLAKWKA
DRKAKKLAEERRKVQAEMRKKSKGKGLSVLSGRALYDYDANLFVDDADAV
DNDTMKQRNDEEDGEGEDGRKSHGEEKENAKGAGAAAAGVAVKEALFEGD
DEDLDDLDDEEGA*
back to top

mRNA from alignment at L-elsbetiae_contig8558:1079..8189-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8558.17589.1 ID=mRNA_L-elsbetiae_contig8558.17589.1|Name=mRNA_L-elsbetiae_contig8558.17589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7111bp|location=Sequence derived from alignment at L-elsbetiae_contig8558:1079..8189- (Laminarionema elsbetiae ELsaHSoW15)
CAGAAATACATCACGACTGTGCAGAAGAGCGTCAACTCCACGGAGCAGCA
GCGCGCCATAGATGCCGCCAAGAACAAAAAGATGGCCGGGAAGGAGGTGT
GTTGGCAAAACAGCAGTGGTGCGGTTGCGCCGGCGTTCGAGGTTCCGTTT
TCGCTGCAAAGGTTGGGTGCGGCGGATGGATGGATGCAAGGCAGCGTGGG
AATTCAAACCACATTTATTGCAACATTTCAGGACTAACTGTTCTTTTCTC
AGCGCACGCTGCTTTGTTGGACGACAAGCATCGATCTATGCAGCACCAGT
AGTGTTGGGGTGGCACATCGGTGAAAATACTGCTGTGGCCACTGGATGTA
GCCTTTGCGCGCGATAAATAGCTTAACGAGCCACTGCCTGCCACGTGCAT
ACCACATACTTCTATGAATGCTTGCCACCGTTGTGCTTGCTTGCGTGATT
CTCAACTCCGATTCTGACGCGCATCACGCGACACCCCCCTCCGCCAAGCC
GCCTCGGCTGGGGGAGGCGTGCTTACGGAGCGAAAATGCCAGTCGCCGCC
AGCAGCAGCAGCAGCAGCGATAAAAAAAAAGCAAAGCATCCCACACGCGC
CACCAACACCTTCCCACGCCCTCAACCCGTCGCGCCCCCGCACAACGGGC
CCGCGCTCCCCTTGTCCGGCTTGGCGTCTGCTCCGCAGGCAAAGAAAGCT
CAGGAGGCGGAGCTTGCGGCCCTCTTCGATGAGGCCCTCCTGACCGGCGT
CAAGAAGGTGCGGGGCGGCACGGTACACGGTACGGTATACGGTACGGTAT
ACGGTGCGGTATACGGTGCGGTATACGGTGCGGTATACGGTGCGGTCCGG
CGCAAACGGCGCAGGCTAGGTCAATTTTGGAAAACAGAGCAAATTTATGG
GATCAGACACAAACAAGGCGGGAGGGAGGGAGGGAGGGAGGGGGCATGGG
GGGGGGGAAGGAGTGGCGGCGGTATGTAGCTCCCCGCCGGTTGACAGGGC
TGTGCACGCACACGCTTGTAACGTGAGGCGCGCGCACGCCTCTTCTTGCT
GTACTCTCTCGGGCGGGCTTGTTGCTGAAGAGAGAGGGGGCAGAACTCGA
GGCAGCCAGATGGATAAGGCAGCCAGCGAGAAATCGCTTCGTTTTGTGTT
TCGCGAGTAGTTTACTCTAACGGACGCCCGCAACCCGGCTGGAGCGTGAG
ACTCTCCCCCCCTATGCCGTCCATGTGCCCAACTATCCCCCCCCATGGAG
CTTGCGTGTGCAGCGACACAAACACAAGGTGCACGCCCCCCGTGGCTGCG
TCTGGATCATTTCAACCGAGCTGAAGTGAATGGGTGCCAGCGCGAAAAAA
TGGAAAAAAAAAATCGTTTGGGTTCTCAGCTTCCCGAAAGAAAACCCCCG
TTTTTTCTCGCGTCCGTGTGCGTGTGCGTGTGCGTGTGCGTGCCCCCCCC
CCTCTGCTGTGGCGAAATACGTTGACAATGATTAAGGGAGGCGCTGCCGG
GAAAGGCAAGGCGCCAGCGGTTGCCGTGGAAACCAAGGCTAAGGTGGTCC
AGGAAACTATCGTCATCGAAGAGGGGGAGAAGACCTTGGAGGACTTGATC
GAGGAGCAGCGAGCGAAGCTTCACAAGGAGGGCAAGAAGGCGAGGAGCGG
GCAGGGGCGCGTTTAGGGAGAGAGGGCGGGGGGGGAGGGGGGGGGGTGAA
CTTAAATCAATAACTGGACTTGAGTGGTCCACCATCATTGGCTTTCCGGG
TAGTAGTTTTTCGCTCAGAGCTGAGAGGTCACGTGAGCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCGTTCGGTTCGGTTTGCCGAGGGCGGC
TGCTGCCTTACCCCCATTCTTTTGCCGGCGCTTGTTTTCGCCCACATATG
TATAGCGAGCGGGTTATAGCAGCGTTTCGTCTATATATGACGGCTTCGTC
AATGCTCTCCGAGCAGTTTGGTTCGGTCACACGCCCCCAGCTGCGGGGAG
GGGGGTTGGGGCGCAGAGGAGAATGGAAGATTCCCACACCCAGCTTTAGT
TAGACCGAGCGCCTCCTGCTGCCCCGTTTCCTGCAATCGCGTGCCGTTCG
TATTTTGCTCACACACCTGTGCCTACTCTCTCTACCAACGCCGTTTTTTT
TTCGCACAGGGCACCCCGGTAAACGAGGAGACCTTGGCAAAGTGGAAAGC
TGATCGAAAGGCGAAGAAGCTGGCGGAGGAGCGCCGCAAGGTAACCATGC
CTCATCTATCGAAGTATAAACATACATACGAAGTATATTATATGTACATC
GTACAAAGTGTAAACATTGCTTATACGGAGTTTTTTCCTGTCTACTTCCT
CTGTCCCCCGCAAGTAAAGGTCCTTATCGGGAGCAAATCATATCTCGCCA
ATGGAGTTGCCTACGATGCTGTAGTTGAGTGTTGCGAAAAGCTATACCGG
CAGATGGTATGTATGATGCTGAAAATAAAAATCGGAGTCGTTTTTAATGA
TTGACAATTAGTGGGTCAAATTCTACTAATTGGCCGAATTCGGCCAATTT
GTACCGTTTTCGGCCGATAATTGACGATGTTGGCCTATTTTCATGAAAGA
CGCAGCCGACATAATGCTGACATGCTTTCGTGCGAGGCGTAGGCATCGTT
CATCAGTGACGAAAAGCGGAAACAAAAAGCAACCTGGGCGTTTCGTATAA
AGGCGTTTTTTAGCCGTTTTCCGGGTTTTCCATTTTCTTGTCTGTTTTCC
GGAAAGAGGCCAAATACGGCCTCTTTTGAGCCGTTCGTGCATGCAAAATG
AATAACGGATTTCAACTAAAAAAACATGAAATATTTCAAAAACATTATCG
CCTACATACGGCATCAGAGGGAGAGGACGGCTGAACCCTTTCTCGCGACA
AAAATCTTAGGCAAGCACCGCAGACGGGGGGAGTGGGGGCCTTGGGGAAA
GGAACCCTTCTGTGTGACCACGGTTCAGTACTCTGGCAAGATGTCCTCGT
GACGGGAGCCCATCGAGCACTGGAAATAAATGTGAAGGAGAAAAAAAGAG
AAGACATCAGACACCGTTTAGGGTCTGTGTAATCCTAAGGACCTTTACTT
GTAAGGACAGAGGAATTATCTCCCTATCTGTCTGTCCATCAATCGAGCCA
TCTTCTATTTGTTGGGGCTGCCGTAGCCTCCGGCAGTGGCGCGGTCAAAA
AAAGATACGCAACGCGAGCAGCTGTCGTACCCATGTATACTAGTATCTGT
CTGTCTTTCAATCGATCTACGCTACCGTAGCCTCCGGCGGGTGGGGCGCG
GCCAAAAAAAGATACGTTACACCGTGACGCGCATCGCTGCGGCTACTCGC
TCTCTGCGCAGCAGCTTTTGATTTTTATTCTCAAGTGATTTATTTTTCTT
GGTCTTGGGGTGCTTGTGCTGCTTTCGGAAGTTCGTGATCTCCTGACCCT
TGTCGTCCAGCCACCCAAAGTATATAACAGTTATATATACATTTATTTGT
TTTTTTCCTCCCACTATTGGCTTATTCGTCGTCTGCCAAGTATTTCGAGC
TGGCTGTTAGTTAGCACTTCGTGTGTGTTTCGTGACTCCACACCCGATTT
TTCTATTGTTGGTTCCCTGGTGGATGGATGGCATAGAAACAATTGCGGGT
TTCATCGCCTATAGATACATAATAGACAAATTGGTGTCTGGGAACTTCTG
TTCCGAAATCTGAATCAGTAGGCGATCGGCCTCCACTAGCCCAAAAACGT
CAGTATGACAGCAGTTGTTTTGAACATGGTAGCACATGCCAGTAGACTGG
ACAGCTTTTGTACCTGATGAGCACAGACCGGCACAGCTCCGTTTGGTTCA
AGGGAGCGGCAGCACAGAAAATAAGTTGTTTGTTTATTTAGTATGCGCAG
CAGCTGCTGGTTCGGTGCTCCAACACAGCAGCAGCTGCTATTTTTTCAGT
TGTAAATTTAGAAATACTTCTGCTGATGCCTTCGCCTGTTTGCTTTCGTC
TTGCATCATCCCCTGCCGCTGTGCTCTCATGAGCTCGCTCCGAAAGGGGT
ATTGTTTGAAAGCTTGCGTTCTCTACATACGAATGATTTACGAGCGTCTT
ATGCCCGAATGGGTTAATGCGTGGGCCGTGTGCTCTGCATGGACCGCACG
CGCGCAACGTCGCCACCCGCAGGTCCAGGCGGAGATGAGGAAGAAGAGCA
AGGGCAAGGGGCTCTCCGTCCTCAGCGGCCGAGCCCTGTACGATTACGAC
GCTAACCTCTTCGTGGTGAGCAGAAGAGAAAGAACACTAAAACTTGTATA
CATGTATCTATGTATAACATATTGTATGGATTACGGATTTTGTGTGAGCA
TATCTTGAGAGGAAAAAAGGGGGTTAGTATGCCTACAACCTACAACAGAT
CCCTCTGGAACGATATTTTCACAGACCGGACGTAGACTGCTGACATTTGT
ATACATTAATTAAAATCCGGGTCTTTTTTTCTTCTTCTTTTTTCTGGACG
TTCTTGCATGGCGACCGGCCACTCTGCTTAGTTCTCCCGCACGCACCACC
CACACAACGCAAGCAGAGATCCTAACCTTGATCTTGGGACAGCGCCAGTG
CGACCCTTCAACTAACTACCTACGCAGGAAGCAGCACGTGCTGTCTGTAA
CGGGTGTGACGTCACGTTGGTAGGCCTGCTGGGTAGAAAGAAGGGCCTGG
GTGTCACCGCCCGTGTATCGGTTTCGAGTGCCGCACGCGGGTTCAGGGTA
TCCGAGGGTGCGAGCTCACGTTTCAGCATCGCACTGTGCTCTCCACGGTA
GTGGTTATGGCATACATACGGCACATACTACCATGTTGCGCGCCCGGGCG
ACGCCCGTGCCAAAAGTCACATGTACCATGGTGCCCCCATTTCCTCGGCT
ACAGAGCCGCCTTGATATGAAACTAAGCCAGCTGCGGCCGCTTGGTTCTG
CTTTTTCCGCACCAGTGGGGTGAGGGCAAGTAAGAAATCGTCGAGTTTTT
TTTTTACTGCTAAATTTTGAAAAAAAACAAAAAACAAAATGTTGCTGTAG
TTGTTGTTGGTGGTGGTGGTGGTATTTAGTGTTTCATCGTGGTTGCGTCG
ATACCATTATTTCTGCTACTGCTCTCACCGCGGTGTTCACACGGGACTTG
CTGTGACGAAACATAACCGTCGTGCGGGGTGGGTGCGTGCTGCAAACAGG
ACGACGCGGATGCCGTGGACAACGATACGATGAAGCAGCGCAATGACGAG
GAAGACGGCGAGGGCGAGGACGGCCGAAAAAGCCACGGAGAGGTGAGTCA
GCGGCCATGTGGTCGGAGAAGCCTCGGTGCTTTATACATAAATAGCTGAT
GTTTTTCATCGTCAAGAGCCGTTTTTGCTCAAAACTGCGAGGGTGGATGC
CCATCGATCGGTCGGTGGGTATAGCTAAATAGGAGTACAGAGGAAGCCGC
TCCGTGGAAAATCTTCTTTTTCCGACGACGACTGACTAAAAGTAGTGGGG
ATGCTGTCGGCGGTATCGACGCGTGTGGCTGTTTTGCCGCCGCGCTTTAC
GGCACGCGAGTTGGACGGTCTACAGCAGTTACCAAGGAATCCTGCCGGGA
TTTTTGTCGTCGTGATACTGCCGGATACTACGGACGGTGTTTGTTTGCTG
TTCACGAACAGTTCACGCCCGTGTATCGGCTGTTGAGACTGCGAAAAACA
GCACGGCAGGCAAGCGGCTCGTGTCGCTGGCCAGGTCTTTTTCGGTGTCG
TCGGTGCGTGTGGTGCCTGCCCACTTGCATCAACGCGAGGCTCACCAGTG
TGAGGTATCTAGCTTTCGGTTTGTGCGCACATAGGCTTTTCCTGCAATGG
AGCCCCCAATCCTCAACAAGAACTGCGGGGGATTTTTCACTCTATTTCCT
GGATAAATACCGTAGGTGACACAAGATACCACACCCCCTGGACAGACTTT
CAAAGCTCGATTCCTCCTCAGCAAGAAGAGTGCCAGTGCCGAAAGAGGTG
GCATTTGAAAGATCTAGCCGAGGGCTGTCCGAACATGTGTTGCTTGGTGC
TGGCACCTTCTTCGTTACGGAGTAATGGAGCTCTAAAGTTCGGTCCAGGG
GGTGTGGTATCTTGTGTCACCTACGGTACCCCCCCGCGCGCTGGCGCCAC
AGCTCTTTTTTAGAACTGGGAGTTCTATCGCAGGAAGCCTATACATTCGG
TGTCTTTTTGGTTTTGTTCTCCTTTTGGTGTGTTGTCATATGCATCCATG
GTTTCGCGGCGGCTCTCGTATTTCGGCGGCAGAGCGTGCGGCAAGAAGTG
GCAGCTATCCACCAACCGCGCGATTCGATACCTCCCTTGTCTTGTGTGCG
TGCGTGCGTGCTGCTGAAGGAGAAGGAGAACGCCAAGGGCGCGGGAGCAG
CAGCTGCAGGGGTAGCAGTAAAGGAGGCGTTGTTCGAAGGGGACGACGAG
GACTTGGACGACTTAGACGACGAAGAGGGTGCGTGAGACGCCCCTCCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCTGATGGCCCAACGCGTGTAGTGC
TTTACAGGGTTGGGGGGTTCGCCTCCTCGGGGGGTCGGTTCTTGTTCTTG
GAGTCGTGGCAGATTTATGGATGGATGATGCACACGCACCGGCAGTGGTA
GGTGCGAGGCGTTCGCTTCTGTGACGCTATCTTGGTGTCCTAAGCGCGAC
GGTGGCTTTTGGTGTGTACGAGGCGTTCGCTTCTGTGACGCTCTCTTGGA
GTCCTAAGTGCGACGGTGGCTTTGTCAGCTCCGCTACTACTGTGCTCACC
TCTGGCCTCAGAAAGGGAACGGAGGTGGCGCTGCTTCTGTCTGTGTCGCC
GCTCGACCGGGCATCTTAGATGTGTATCGTACTACTGTGCGTTATTTCCT
TGTGGTCTTTGGTCGGCCGGCTGCATAACAACACTTGTTTCGCAAATAAC
ATTGCATTACAGGGGGGTTGGTGGTTTGATTTATTGAGTAGGACGTACGC
TGAAGATGCTGCTGAGCGCTTGTTGGCTGCTCTGAGATAACAGTAATAGT
AGTCGTCGTTTTGCTGCGCAAGCCGAAAGCTTGTGTATTTTCTTCCTTCA
AGAACTCCGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8558:1079..8189-

>mRNA_L-elsbetiae_contig8558.17589.1 ID=mRNA_L-elsbetiae_contig8558.17589.1|Name=mRNA_L-elsbetiae_contig8558.17589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1284bp|location=Sequence derived from alignment at L-elsbetiae_contig8558:1079..8189- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGGGAAGGAGATGGCCGGGAAGGAGGCAAAGAAAGCTCAGGAGGC
GGAGCTTGCGGCCCTCTTCGATGAGGCCCTCCTGACCGGCGTCAAGAAGG
CAAAGAAAGCTCAGGAGGCGGAGCTTGCGGCCCTCTTCGATGAGGCCCTC
CTGACCGGCGTCAAGAAGGGAGGCGCTGCCGGGAAAGGCAAGGCGCCAGC
GGTTGCCGTGGAAACCAAGGCTAAGGTGGTCCAGGAAACTATCGTCATCG
AAGAGGGGGAGAAGACCTTGGAGGACTTGATCGAGGAGCAGCGAGCGAAG
CTTCACAAGGAGGGCAAGAAGGCGAGGAGCGGGCAGGGGCGCGGAGGCGC
TGCCGGGAAAGGCAAGGCGCCAGCGGTTGCCGTGGAAACCAAGGCTAAGG
TGGTCCAGGAAACTATCGTCATCGAAGAGGGGGAGAAGACCTTGGAGGAC
TTGATCGAGGAGCAGCGAGCGAAGCTTCACAAGGAGGGCAAGAAGGCGAG
GAGCGGGCAGGGGCGCGGCACCCCGGTAAACGAGGAGACCTTGGCAAAGT
GGAAAGCTGATCGAAAGGCGAAGAAGCTGGCGGAGGAGCGCCGCAAGGGC
ACCCCGGTAAACGAGGAGACCTTGGCAAAGTGGAAAGCTGATCGAAAGGC
GAAGAAGCTGGCGGAGGAGCGCCGCAAGGTCCAGGCGGAGATGAGGAAGA
AGAGCAAGGGCAAGGGGCTCTCCGTCCTCAGCGGCCGAGCCCTGTACGAT
TACGACGCTAACCTCTTCGTGGTCCAGGCGGAGATGAGGAAGAAGAGCAA
GGGCAAGGGGCTCTCCGTCCTCAGCGGCCGAGCCCTGTACGATTACGACG
CTAACCTCTTCGTGGACGACGCGGATGCCGTGGACAACGATACGATGAAG
CAGCGCAATGACGAGGAAGACGGCGAGGGCGAGGACGGCCGAAAAAGCCA
CGGAGAGGACGACGCGGATGCCGTGGACAACGATACGATGAAGCAGCGCA
ATGACGAGGAAGACGGCGAGGGCGAGGACGGCCGAAAAAGCCACGGAGAG
GAGAAGGAGAACGCCAAGGGCGCGGGAGCAGCAGCTGCAGGGGTAGCAGT
AAAGGAGGCGTTGTTCGAAGGGGACGACGAGGACTTGGACGACTTAGACG
ACGAAGAGGGTGCGTGAGAGAAGGAGAACGCCAAGGGCGCGGGAGCAGCA
GCTGCAGGGGTAGCAGTAAAGGAGGCGTTGTTCGAAGGGGACGACGAGGA
CTTGGACGACTTAGACGACGAAGAGGGTGCGTGA
back to top