mRNA_L-elsbetiae_contig8547.17582.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8547.17582.1
Unique NamemRNA_L-elsbetiae_contig8547.17582.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: D7FGT8_ECTSI (SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT8_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.220e-26
Identity = 56/77 (72.73%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 LAKTVDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            L + VDRLSAQVAGRL+FEY+DP +NFDRSRVKGLVA+LVQVKDPAHSTALEVAAGG+LYQ          LLL +G
Sbjct:  491 LKEVVDRLSAQVAGRLSFEYRDPERNFDRSRVKGLVAKLVQVKDPAHSTALEVAAGGRLYQVVVDNQDTGKLLLEQG 567
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: A0A6H5K638_9PHAE (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K638_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.370e-26
Identity = 56/77 (72.73%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 LAKTVDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            L + VDRLSAQVAGRL+FEY+DP +NFDRSRVKGLVA+LVQVKDPAHSTALEVAAGG+LYQ          LLL +G
Sbjct:  504 LKEMVDRLSAQVAGRLSFEYRDPERNFDRSRVKGLVAKLVQVKDPAHSTALEVAAGGRLYQVVVDNQDTGKLLLEQG 580
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: A0A7S2KSU1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KSU1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.820e-19
Identity = 49/77 (63.64%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 LAKTVDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            L + VD LSAQ+ GRL+F Y DP + FDRS+VKGLVARLV VK P HSTALEV AGGKLYQ    E A    LL  G
Sbjct:  347 LQEKVDTLSAQLEGRLSFNYSDPVRGFDRSKVKGLVARLVDVKLPKHSTALEVVAGGKLYQVVVDEAATGKALLNNG 423
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: A0A7S2RK61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RK61_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.030e-18
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 LAKTVDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            L + VD LSAQ+ GRL F Y DP K FDRS+VKG+VA+LVQV++  H+TALEV AGGKLYQ    E      LL RG
Sbjct:  247 LQEVVDTLSAQLQGRLAFNYSDPVKGFDRSKVKGMVAKLVQVQNSKHTTALEVVAGGKLYQVVVDEAITGKALLNRG 323
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: A0A7S2XJV8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJV8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.170e-18
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 LAKTVDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            L +TV+  SAQ+ GRL+F Y DP + FDRS+VKGLVA+L+QVK+ AH+TALEV AGGKLYQ    E      LL  G
Sbjct:  110 LRETVETFSAQLQGRLSFNYSDPVRGFDRSKVKGLVAKLIQVKESAHATALEVVAGGKLYQVVVDEAITGKALLNNG 186
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: K0T6D1_THAOC (Structural maintenance of chromosomes protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T6D1_THAOC)

HSP 1 Score: 88.6 bits (218), Expect = 1.190e-18
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 LAKTVDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            L + VD LSAQ+ GRL F Y DP + FDRS+VKGLVARL+ VK P HSTALE+ AGGKLYQ    E      LL +G
Sbjct:  492 LQEKVDTLSAQLEGRLAFNYSDPVRGFDRSKVKGLVARLINVKVPKHSTALEIVAGGKLYQVVVDEATTGKALLDKG 568
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: A0A7S2H5Y5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H5Y5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.080e-18
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   13 VDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            V+RL+A++ GRL+F+Y+ P K FDRS+VKGLVARLVQV +  HSTALEV AGGKLYQ     +    +LL +G
Sbjct:  163 VERLTAELEGRLSFDYRTPGKGFDRSKVKGLVARLVQVLNSGHSTALEVVAGGKLYQVVVDTEVTAKMLLQKG 235
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: A0A7S2H5V1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H5V1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.190e-18
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   13 VDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            V+RL+A++ GRL+F+Y+ P K FDRS+VKGLVARLVQV +  HSTALEV AGGKLYQ     +    +LL +G
Sbjct:  163 VERLTAELEGRLSFDYRTPGKGFDRSKVKGLVARLVQVLNSGHSTALEVVAGGKLYQVVVDTEVTAKMLLQKG 235
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: A0A8J9X5U0_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X5U0_PHATR)

HSP 1 Score: 87.4 bits (215), Expect = 2.870e-18
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 LAKTVDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            L++ VD LSAQ+ GRL F+Y DP + FDRS+VKGLVA+L++VKD  ++TALEV AGGKLYQ    E      LL RG
Sbjct:   61 LSERVDTLSAQLEGRLRFKYSDPVRGFDRSKVKGLVAKLIEVKDHKNATALEVVAGGKLYQVVVDEAITGKALLDRG 137
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BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Match: B7GAL2_PHATC (Structural maintenance of chromosomes protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAL2_PHATC)

HSP 1 Score: 87.4 bits (215), Expect = 3.020e-18
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 LAKTVDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTALEVAAGGKLYQARRKEDAYTSLLLARG 231
            L++ VD LSAQ+ GRL F+Y DP + FDRS+VKGLVA+L++VKD  ++TALEV AGGKLYQ    E      LL RG
Sbjct:  492 LSERVDTLSAQLEGRLRFKYSDPVRGFDRSKVKGLVAKLIEVKDHKNATALEVVAGGKLYQVVVDEAITGKALLDRG 568
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8547.17582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGT8_ECTSI3.220e-2672.73SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1... [more]
A0A6H5K638_9PHAE4.370e-2672.73Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2KSU1_9STRA1.820e-1963.64Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2RK61_9STRA1.030e-1859.74Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2XJV8_9STRA1.170e-1858.44Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K0T6D1_THAOC1.190e-1859.74Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2H5Y5_9STRA2.080e-1858.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2H5V1_9STRA2.190e-1858.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J9X5U0_PHATR2.870e-1858.44Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7GAL2_PHATC3.020e-1858.44Structural maintenance of chromosomes protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8547contigL-elsbetiae_contig8547:8112..8363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.7e-22
Seed eggNOG ortholog2880.D7FGT8
Preferred nameSMC2
KEGG koko:K06674
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034506,GO:0034641,GO:0035327,GO:0035639,GO:0036094,GO:0036292,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045595,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1990837,GO:2000241,GO:2000242,GO:2000736
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0933@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816937.3367465-CDS-L-elsbetiae_contig8547:8111..83631622816937.3367465-CDS-L-elsbetiae_contig8547:8111..8363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8547 8112..8363 -
1691683925.8675795-CDS-L-elsbetiae_contig8547:8111..83631691683925.8675795-CDS-L-elsbetiae_contig8547:8111..8363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8547 8112..8363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8547.17582.1prot_L-elsbetiae_contig8547.17582.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8547 8112..8363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8547.17582.1

>prot_L-elsbetiae_contig8547.17582.1 ID=prot_L-elsbetiae_contig8547.17582.1|Name=mRNA_L-elsbetiae_contig8547.17582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
LAKTVDRLSAQVAGRLNFEYKDPHKNFDRSRVKGLVARLVQVKDPAHSTA
LEVAAGGKLYQARRKEDAYTSLLLARGVVCMYV*
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mRNA from alignment at L-elsbetiae_contig8547:8112..8363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8547.17582.1 ID=mRNA_L-elsbetiae_contig8547.17582.1|Name=mRNA_L-elsbetiae_contig8547.17582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig8547:8112..8363- (Laminarionema elsbetiae ELsaHSoW15)
TTGGCGAAGACGGTGGACAGACTCTCAGCCCAGGTGGCGGGGCGGCTGAA
CTTCGAGTACAAAGACCCGCACAAGAACTTCGATCGCTCCAGGGTGAAGG
GCCTCGTGGCGAGGCTGGTGCAGGTGAAGGACCCCGCCCACAGCACGGCG
CTCGAGGTCGCCGCCGGGGGCAAGCTATACCAGGCGAGGAGAAAGGAGGA
TGCATACACATCTCTTTTGCTTGCCCGTGGGGTTGTATGTATGTATGTAT
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8547:8112..8363-

>mRNA_L-elsbetiae_contig8547.17582.1 ID=mRNA_L-elsbetiae_contig8547.17582.1|Name=mRNA_L-elsbetiae_contig8547.17582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig8547:8112..8363- (Laminarionema elsbetiae ELsaHSoW15)
TTGGCGAAGACGGTGGACAGACTCTCAGCCCAGGTGGCGGGGCGGCTGAA
CTTCGAGTACAAAGACCCGCACAAGAACTTCGATCGCTCCAGGGTGAAGG
GCCTCGTGGCGAGGCTGGTGCAGGTGAAGGACCCCGCCCACAGCACGGCG
CTCGAGGTCGCCGCCGGGGGCAAGCTATACCAGGCGAGGAGAAAGGAGGA
TGCATACACATCTCTTTTGCTTGCCCGTGGGGTTGTATGTATGTATGTAT
GATTGGCGAAGACGGTGGACAGACTCTCAGCCCAGGTGGCGGGGCGGCTG
AACTTCGAGTACAAAGACCCGCACAAGAACTTCGATCGCTCCAGGGTGAA
GGGCCTCGTGGCGAGGCTGGTGCAGGTGAAGGACCCCGCCCACAGCACGG
CGCTCGAGGTCGCCGCCGGGGGCAAGCTATACCAGGCGAGGAGAAAGGAG
GATGCATACACATCTCTTTTGCTTGCCCGTGGGGTTGTATGTATGTATGT
ATGA
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