mRNA_L-elsbetiae_contig854.17572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig854.17572.1
Unique NamemRNA_L-elsbetiae_contig854.17572.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig854.17572.1 vs. uniprot
Match: A0A3C0TVI1_9PROT (3-mercaptopyruvate sulfurtransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TVI1_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 5.620e-6
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 3 
Query:  177 MPTPLLAAGWRAARH*R---RFSPAPWSLRKSGK---AEFKEGHLPGAVFFDIDEIADVSLP 344
            +P  L++  W AA       R   A W L  SG+   AE+KEGH+PGAVFFDIDEI D + P
Sbjct:    4 VPNTLVSTEWLAAHLNAPDIRIVDASWYLPGSGRDPRAEYKEGHIPGAVFFDIDEICDTANP 65
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BLAST of mRNA_L-elsbetiae_contig854.17572.1 vs. uniprot
Match: A0A3M1JQA8_9PROT (Sulfurtransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JQA8_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 7.770e-6
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 3 
Query:  165 MPVMMPTPLLAAGWRAARH*R----RFSPAPWSLRKSGK---AEFKEGHLPGAVFFDIDEIADVSLP 344
            MPV+   PL++  W  A H R    R   A W +   G+   AEF + H+PGAVFFDIDEI+D   P
Sbjct:    1 MPVVTADPLVSTQW-LAEHLRAPDVRVVDASWHMPAEGRDPRAEFAQAHIPGAVFFDIDEISDTDSP 66
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BLAST of mRNA_L-elsbetiae_contig854.17572.1 vs. uniprot
Match: A0A8H9XF11_9CAUL (Sulfurtransferase n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A8H9XF11_9CAUL)

HSP 1 Score: 52.8 bits (125), Expect = 1.060e-5
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 3 
Query:  174 MMPTPLLAAGWRAARH*R---RFSPAPWSL---RKSGKAEFKEGHLPGAVFFDIDEIAD 332
            M+P PL+   W AAR      R   A W +    + G  EF++GH+PGAVFFDIDEIAD
Sbjct:    1 MLPGPLVDVDWLAARLDDPDVRVVDATWHMPAENRPGLKEFRKGHIPGAVFFDIDEIAD 59
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BLAST of mRNA_L-elsbetiae_contig854.17572.1 vs. uniprot
Match: A0A1Q7RZ19_9BACT (Sulfurtransferase n=4 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1Q7RZ19_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 4.050e-5
Identity = 28/58 (48.28%), Postives = 33/58 (56.90%), Query Frame = 3 
Query:  189 LLAAGWRAA---RH*RRFSPAPWSLRKSGKA---EFKEGHLPGAVFFDIDEIADVSLP 344
            L+  GW  A   R   R     W +R  G+    EF E H+PGAVFFDIDEIAD+S P
Sbjct:    6 LVTTGWLVANLGRRNLRVVDGSWHMRGLGREAFEEFVEAHVPGAVFFDIDEIADLSTP 63
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BLAST of mRNA_L-elsbetiae_contig854.17572.1 vs. uniprot
Match: A0A2M8U0W2_9PROT (Sulfurtransferase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2M8U0W2_9PROT)

HSP 1 Score: 50.4 bits (119), Expect = 7.110e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:  228 RFSPAPW---SLRKSGKAEFKEGHLPGAVFFDIDEIADVSLP 344
            R   A W   ++ + GKAE+   H+PGAVFFDIDEIAD+ +P
Sbjct:   26 RIVDASWYLPAMNRDGKAEYNAAHIPGAVFFDIDEIADLDVP 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig854.17572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3C0TVI1_9PROT5.620e-648.393-mercaptopyruvate sulfurtransferase n=1 Tax=Alpha... [more]
A0A3M1JQA8_9PROT7.770e-644.78Sulfurtransferase n=1 Tax=Alphaproteobacteria bact... [more]
A0A8H9XF11_9CAUL1.060e-549.15Sulfurtransferase n=1 Tax=Phenylobacterium sp. Tax... [more]
A0A1Q7RZ19_9BACT4.050e-548.28Sulfurtransferase n=4 Tax=unclassified Candidatus ... [more]
A0A2M8U0W2_9PROT7.110e-552.38Sulfurtransferase n=3 Tax=Alphaproteobacteria TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig854contigL-elsbetiae_contig854:13572..14555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size344
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig854.17572.1prot_L-elsbetiae_contig854.17572.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig854 13588..14524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816936.2911825-UTR-L-elsbetiae_contig854:13571..135871622816936.2911825-UTR-L-elsbetiae_contig854:13571..13587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig854 13572..13587 +
1691683925.0996242-UTR-L-elsbetiae_contig854:13571..135871691683925.0996242-UTR-L-elsbetiae_contig854:13571..13587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig854 13572..13587 +
1622816936.3266127-UTR-L-elsbetiae_contig854:14524..145551622816936.3266127-UTR-L-elsbetiae_contig854:14524..14555Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig854 14525..14555 +
1691683925.1322904-UTR-L-elsbetiae_contig854:14524..145551691683925.1322904-UTR-L-elsbetiae_contig854:14524..14555Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig854 14525..14555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816936.301829-CDS-L-elsbetiae_contig854:13587..138331622816936.301829-CDS-L-elsbetiae_contig854:13587..13833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig854 13588..13833 +
1691683925.1094215-CDS-L-elsbetiae_contig854:13587..138331691683925.1094215-CDS-L-elsbetiae_contig854:13587..13833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig854 13588..13833 +
1622816936.3141356-CDS-L-elsbetiae_contig854:14473..145241622816936.3141356-CDS-L-elsbetiae_contig854:14473..14524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig854 14474..14524 +
1691683925.1199148-CDS-L-elsbetiae_contig854:14473..145241691683925.1199148-CDS-L-elsbetiae_contig854:14473..14524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig854 14474..14524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig854.17572.1

>prot_L-elsbetiae_contig854.17572.1 ID=prot_L-elsbetiae_contig854.17572.1|Name=mRNA_L-elsbetiae_contig854.17572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MRGVTAFLLPLLLSLVQQYRLFNMSTAFLFRRPVLLSRPGKALLARTSNH
ARHDAHAASSSRMASSSALTPIFSSPLVTTEERQSGVQGGPSAGSGVF*
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mRNA from alignment at L-elsbetiae_contig854:13572..14555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig854.17572.1 ID=mRNA_L-elsbetiae_contig854.17572.1|Name=mRNA_L-elsbetiae_contig854.17572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig854:13572..14555+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTCTTGCTACTTCGATGCGTGGCGTCACCGCTTTTCTGCTTCCTCTGC
TGCTCTCCTTGGTTCAGCAATACCGCCTCTTCAACATGAGCACGGCGTTT
CTGTTCCGCCGTCCCGTGCTTCTTTCGAGACCGGGCAAAGCCCTGCTCGC
AAGGACCTCGAACCATGCCCGTCATGATGCCCACGCCGCTTCTAGCAGCA
GGATGGCGAGCAGCTCGGCACTGACGCCGATTTTCTCCAGCCCCCTGGTC
ACTACGGAAGAGGTGTGTTTGCATCTGTGTCTTTGTGTGTGTGTTTGTGC
AGCAGGATAAAGGTCGGAGAGAAAGTTGTGCAGATTTGCTTTGATCCTTG
TGGTAAAGTTGTCGAAGTTATATCGCGGACAGGGAGCGGTCCTTCAGCAA
TCCCTGCTGCTGCACCATGCCCATTGAAATGTATTGTGTGTGACGGACTC
GAGTGTTTGCACGAGGAAATCATCCCAAGCCCCACCAGCCCACTCCTGCT
GCTCCACATATGTACGCATGAGTACGTGTCTGGTTTACATGGACTTAGTT
GACTACATGCACCTTTGATCATCCGCCACACCTATCGACTATTGTGCAGT
CAGTGCATGTGTAGATAGATTGTTCAGCCCCATCAGTGCAGTTCTGGCAG
GGCTTTCATGAAATCCCACCCCTAACAGTCACCTGCAGCAGTCTGTCTTG
GTGACATCGTGTTTTGTGACCACGGGCCCGCATCGATGTGTTGGACTGGA
GAGCTACAATGCGTGAGAAGTAACGTCACCTACAAGCATAACCCCGTCCA
CCTCTGCGCTGGACGACACCTAAAGGTGAAGAAAGCGTTGGCTAAATCTC
CCGACGAAATCCATTTTGTGGACGCGTCTTGGCACCTGGGCGGCGACCGC
AGCGGCAAAGCGGAGTTCAAGGAGGGCCATCTGCCGGGAGCGGTGTTTTT
TGACATCGATGAAATCGCCGACGTTTCTCTACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig854:13572..14555+

>mRNA_L-elsbetiae_contig854.17572.1 ID=mRNA_L-elsbetiae_contig854.17572.1|Name=mRNA_L-elsbetiae_contig854.17572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig854:13572..14555+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGGCGTCACCGCTTTTCTGCTTCCTCTGCTGCTCTCCTTGGTTCA
GCAATACCGCCTCTTCAACATGAGCACGGCGTTTCTGTTCCGCCGTCCCG
TGCTTCTTTCGAGACCGGGCAAAGCCCTGCTCGCAAGGACCTCGAACCAT
GCCCGTCATGATGCCCACGCCGCTTCTAGCAGCAGGATGGCGAGCAGCTC
GGCACTGACGCCGATTTTCTCCAGCCCCCTGGTCACTACGGAAGAGATGC
GTGGCGTCACCGCTTTTCTGCTTCCTCTGCTGCTCTCCTTGGTTCAGCAA
TACCGCCTCTTCAACATGAGCACGGCGTTTCTGTTCCGCCGTCCCGTGCT
TCTTTCGAGACCGGGCAAAGCCCTGCTCGCAAGGACCTCGAACCATGCCC
GTCATGATGCCCACGCCGCTTCTAGCAGCAGGATGGCGAGCAGCTCGGCA
CTGACGCCGATTTTCTCCAGCCCCCTGGTCACTACGGAAGAGCGGCAAAG
CGGAGTTCAAGGAGGGCCATCTGCCGGGAGCGGTGTTTTTTGACGGCAAA
GCGGAGTTCAAGGAGGGCCATCTGCCGGGAGCGGTGTTTTTTGA
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