mRNA_L-elsbetiae_contig8530.17566.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8530.17566.1
Unique NamemRNA_L-elsbetiae_contig8530.17566.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8530.17566.1 vs. uniprot
Match: A0A6H5J5M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5M4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.930e-24
Identity = 99/229 (43.23%), Postives = 116/229 (50.66%), Query Frame = 1 
Query:   40 MFRSFFGTTAAGXXXXXXXXXXXXXKPSGP-QSARKGGTSQAS----STPSAKDSGGFFQLEPTNTSGEGSLFGDLEVKPPATDAKPPPMKKPPAAETESAGGVFSAFQFMATPASAXXXXXXXXXXXXAPHSSSGDPSAPSALLSPASVPMTGGDGDEAPGSGGAGVEMSAFSFLADDSRAESDAAAATGVAPSEEARGGEPESAPGDPPRKQQHAPLSSFSFLSAGG 711
            MFRS FGTT AG              PSG  Q+ARKG  ++ +    S+ + +D GGFFQLEPT+ S E SLF DLEVKPPA + KP PMK P  A++ESA GVFSAFQFMA PA+A                            S  + P+    G   P +GG G  MSAFSFL +    ES AA  +G    E        S PGD   K      SSFSFLS GG
Sbjct:    1 MFRSLFGTTVAGEYGDTGTTGGRRGNPSGQEQAARKGTPNKTAPGGGSSSAHQDGGGFFQLEPTHASAEESLFDDLEVKPPAVEPKPSPMKPP--ADSESAAGVFSAFQFMAEPAAA----------------------------SDKATPV----GGSPPSAGGGGQGMSAFSFLTE----ESPAAGESGEGQDETV------SIPGDAAGKTTP---SSFSFLSEGG 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8530.17566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J5M4_9PHAE1.930e-2443.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8530contigL-elsbetiae_contig8530:3291..7393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1476
Cds size1476
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8530.17566.1prot_L-elsbetiae_contig8530.17566.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8530 3291..7393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816935.8971028-CDS-L-elsbetiae_contig8530:3290..35191622816935.8971028-CDS-L-elsbetiae_contig8530:3290..3519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8530 3291..3519 +
1691683924.8513858-CDS-L-elsbetiae_contig8530:3290..35191691683924.8513858-CDS-L-elsbetiae_contig8530:3290..3519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8530 3291..3519 +
1622816935.9078722-CDS-L-elsbetiae_contig8530:5190..52791622816935.9078722-CDS-L-elsbetiae_contig8530:5190..5279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8530 5191..5279 +
1691683924.8638246-CDS-L-elsbetiae_contig8530:5190..52791691683924.8638246-CDS-L-elsbetiae_contig8530:5190..5279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8530 5191..5279 +
1622816935.920311-CDS-L-elsbetiae_contig8530:6235..73931622816935.920311-CDS-L-elsbetiae_contig8530:6235..7393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8530 6236..7393 +
1691683924.8767588-CDS-L-elsbetiae_contig8530:6235..73931691683924.8767588-CDS-L-elsbetiae_contig8530:6235..7393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8530 6236..7393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8530.17566.1

>prot_L-elsbetiae_contig8530.17566.1 ID=prot_L-elsbetiae_contig8530.17566.1|Name=mRNA_L-elsbetiae_contig8530.17566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=492bp
AEWCVVCARTKFDMFRSFFGTTAAGEDGGAGAAGGGGGKPSGPQSARKGG
TSQASSTPSAKDSGGFFQLEPTNTSGEGSLFGDLEVKPPATDAKPPPMKK
PPAAETESAGGVFSAFQFMATPASATAGAAGAGAAGAAPHSSSGDPSAPS
ALLSPASVPMTGGDGDEAPGSGGAGVEMSAFSFLADDSRAESDAAAATGV
APSEEARGGEPESAPGDPPRKQQHAPLSSFSFLSAGGDAGGGGFAAAAGA
GGGEDAVTSKEGPEENVFYATPAAGAALPTPSEAGGVNQQSSAGRDSHGG
GSGGQRTPSLASGASSPSSSAQGAAAAAASATGTSGATAAEEGVGKKAGG
GVTAAGAGGVPSWKPSSTVVRKKRTARRVGYARDETLSSSSSATRVASPL
SLPSSAAAAAAAAARVASPLSLPSSSASKSGMADTPLSSPLSAVGQKVLA
AGGGKGAPPPVGAAAGGGGVSHVPEAGSNYEAPSVSFPAKKE
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mRNA from alignment at L-elsbetiae_contig8530:3291..7393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8530.17566.1 ID=mRNA_L-elsbetiae_contig8530.17566.1|Name=mRNA_L-elsbetiae_contig8530.17566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4103bp|location=Sequence derived from alignment at L-elsbetiae_contig8530:3291..7393+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGTGGTGTGTTGTGTGTGCGCGCACAAAATTCGACATGTTCCGATC
TTTCTTCGGCACGACCGCTGCAGGCGAGGACGGGGGCGCTGGTGCTGCCG
GGGGCGGTGGAGGCAAGCCATCGGGGCCGCAATCAGCTCGGAAAGGCGGC
ACCTCTCAGGCCTCTTCTACGCCTTCTGCCAAGGACAGCGGAGGCTTCTT
CCAGCTCGAGCCAACCAACACCTCTGGCGGTGAGAGGACTTTTGGCGATG
GCGATGTTTGTGAACGATTCGCTGTGCGCATCCGGGCGTGGAGAGCGTTT
GAACAAGTAATTCAATCACGGAAAAATAAACCAGTGCAGTATTACAAAAG
ATTGTGTGTGTGTGCGGAACTTTTCGAATCTGTGTGAGTAGCGTGCTGTC
TACGCGCTGTATCATAGGGCTGGCTGCCCCCCCCCATTGATGAGCGCGTA
GTCGTGTGTATAGTTCAAGGGACGATTTTCTGGGAGCACCACGTGCGTGA
ATGCTGAGCATTTTTGTGGTTGCGCGAGAGAATTACTCCCCTGCTCTTTG
CTGTGCATGGATCATGTGTGCCTCACGGCCTTTTCTCTCACTCGCGGCGG
CAACCACCGTGTTCCATCTATATCTAGTATTGTACCGTTATTGTGCGGGC
TATTTATCGCACAACCCTTAACCGATTTTCAAAGTTCGATGACTCAACAA
GACGAACTTCGGTGCCGAAAGGGTGGCGCTGGAAATAATCCTTCGACAGC
TATGCGAAAGCGTGTCGGTGGGTATCGGCCAGGCACTTGTTGGTTCGGGG
AGTAATCGAGCCCCAAGTTCCAGGGGGTGTGAGATCAGGCCCGCACAAAT
ACGGAACATATATATCCCCGTGATACCGGCGCCCGGGAATCTGTCCTCAA
CGGTAGGCGGGAAAACGCCTGCCCTCAAGCGGTACAACATTGTTCTTGGA
GGTAGACACGCAGGAAAATGCACCGTGGGTTTCCAGCCGTCAGCCGGTAA
GGCCAAAATCTACCCTAAACCCTAAACCCCCCAGAAGCGAGGTTGTTGTG
CATTGTTCAGTCTCTAGGCCGCTGTAACCGGTCAAACAGCTTGAGGGCAG
CGCATTCCCATCTGCCCTCGAGGGCAGATCCCCGGGCGATGCCGCAATAC
CGTTCCAGGTTGTAGGTAAACATCCATAAACCGGATAATTCACTGGTATG
TTTCTTGTTTGTGGGTTTGATTTTATGTACGTAGACTCTATGTACAAGAT
CCCCCTTCGGAGCGAGCTCATGAGAGCACAGTAGTAGCGGCAGGGGGTGA
TGCAAGACCAAAACAAGCAGACGAAGGCAGCAGGAAGTGCTTCTAAAATT
TACAACTGAAACAAACAAACAAACAGCAGCAGCTGCTGTGTTTAGAGCAC
CGAAGCAGCAGCTGCTGTGCATACTGAATCAAACAGCTGCTTATTTTCTG
TGCTGACGCTCCCTTGAACCAAACAGGGCTGTACCGGTCTCTGTGCTCAT
CAGGTACAATAGATGTCCGGTCTCCTGGCATGTGCTGCCATGCTCAAAAT
AGCTGCTGTCATACTGACGTTTTTTGGGGCTACTGGAGGCCGATAGCCTA
CGGACAGCCTACTGCTTCAGATTTCGGAACAGAAGTTCCAGACACCAATT
TGTATATGTATCTATATGTATTATTTACAAGTATGGTAGATACAAGTAGA
GGTAGATTACTACTCTGTACTCCTTCATAATTTGGACTGGACGCATTCAT
AGCGTTAAGTGTACATCTTGGTGGGAAAGAAAAACAAATTCGTCCCCTGT
CCCCCCTCCTCCGGAGACCTGCATCTCTACATTTTGCACTACTGTTCTGG
CATGAACCGTTTTATCCCCTCGTGCGGGGGTGTTCCGCGCCGCGCCACAG
AGGGGTCACTGTTCGGCGACTTGGAGGTCAAGCCCCCAGCAACGGATGCC
AAGCCCCCTCCAATGAAAAAGCCCCCGGCTGCTGAGACGGTGGGTGCTTC
GGTTTTTAAGGGGGCGCAGGCAGGCAGGCAGGCAGCCAGCCCAGCCAGTG
TCTATCGCAGCTTTGAGGGTAGGGTCGAATTGCTGTGATATGGACCCGTG
CGGAAAGGCGCCTACTTAAAGCGTGCCTACCGTTTACGACACAAGATAAC
ACACACCCTGGACCGATTTTCAAAGCTCAAGAGTAATACTTCGTATAATC
CACAGCGAGAGGAGGAGTGTCAGTCCCGAAAAGGGCAGCGTTGGAAGGAT
CTCTCATCAAGAGCTGTCCGCAAACGTGTTGTGTGGTAATAGAATGATAG
AAGTACTTGTTGCGGAGAAATCGAGCTTGGAAAATCGGTCCAGGGGGGTC
TGTTATCTTGTGTCGTATACGGTATACGCGATATGCCCGATGGATGGATA
AGTGTACCGCATGACGTTGCGGGTGTGTCTCTGCCTCCTGCTCTCGCGAG
TTTTGGCCACTCGACCTCCCTTCACCTGTGATGCAACCAGAGTTTCGCGC
GGACATGATCTCTTGAGATGTGAGCAACGACATGTGTCGGCTTACAGATA
CACAGCGGCACTTCAGATCTCCCGTTTTACGTACCCCCGGGGCTCGGTTT
CTTTATTTCTGTGAGGTACCCAATTTCTGTGGGGTGCCCAGTTTCCTTTT
TAGGTCTTGGTGTGTAATTCAGTAGAGTTTATTTTTGTAGGTACGGGCAG
CTCGATGTGTGTGTGTGTGTATGTGTGTGTAGGTTCTTTCATTTGTGGAG
CTTTTGAGCCTGCATTTATTCCCTCACTTGGCAAGTGCTTCATTCAGTGT
GAGCGCGTGCTGTACCGCCTGCGCGCGGGGTCATTACGAGTAGGTGCCAC
CAGCAAGCCATGCACACCGGCAGTCTGTAACCACGCACCCTTTCCTTCTT
GCCCGCGCACACATCGCTGCCGGAACCGGAAAACGACGAGAGCAGGAGTC
CGCGGGAGGCGTGTTTTCGGCGTTTCAGTTCATGGCAACCCCCGCGTCCG
CCACCGCCGGCGCCGCCGGCGCCGGCGCCGCAGGCGCCGCCCCGCATTCT
TCCTCCGGCGACCCGTCTGCCCCGTCCGCCCTGCTGTCACCCGCGTCGGT
ACCTATGACGGGGGGCGACGGAGACGAAGCCCCCGGCAGCGGCGGGGCGG
GCGTAGAGATGTCGGCCTTCTCTTTTCTGGCCGACGATTCCCGCGCCGAG
AGCGACGCCGCCGCAGCAACGGGGGTGGCCCCGTCGGAGGAGGCGAGGGG
GGGCGAGCCCGAGAGCGCCCCCGGGGACCCCCCACGCAAACAGCAGCACG
CCCCCCTGTCCTCGTTTTCGTTCTTGTCCGCCGGGGGCGACGCAGGCGGG
GGGGGCTTCGCGGCTGCTGCGGGTGCCGGCGGCGGCGAGGACGCCGTTAC
TTCTAAGGAGGGCCCCGAGGAGAACGTTTTTTACGCGACGCCCGCCGCCG
GCGCGGCCTTGCCGACGCCCTCCGAAGCCGGCGGTGTCAATCAGCAATCC
TCGGCCGGGAGGGACAGCCACGGCGGCGGGAGCGGCGGCCAGCGAACTCC
CAGCCTCGCCAGCGGGGCCTCTTCTCCGTCTTCTTCTGCCCAGGGGGCGG
CGGCGGCGGCCGCTAGCGCTACCGGGACGAGCGGCGCCACGGCGGCCGAG
GAAGGAGTGGGGAAGAAAGCGGGAGGCGGTGTTACCGCTGCGGGGGCGGG
AGGAGTCCCCTCGTGGAAGCCCTCGTCGACCGTTGTCCGCAAGAAGAGGA
CGGCCAGGAGGGTGGGCTACGCTCGGGACGAGACCCTGTCCTCCTCCTCC
TCTGCTACACGTGTTGCTTCGCCGTTGTCGCTGCCATCATCCGCTGCTGC
TGCTGCTGCTGCTGCTGCGCGTGTTGCTTCGCCATTGTCGCTGCCATCAT
CATCCGCGTCCAAATCTGGAATGGCCGATACGCCGCTAAGCTCCCCGCTG
TCGGCGGTGGGACAAAAAGTCCTTGCCGCCGGCGGCGGCAAGGGCGCCCC
CCCGCCCGTGGGGGCAGCCGCTGGGGGTGGAGGCGTCTCGCACGTGCCGG
AAGCGGGGTCTAACTACGAAGCCCCCTCTGTATCTTTCCCCGCCAAGAAG
GAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8530:3291..7393+

>mRNA_L-elsbetiae_contig8530.17566.1 ID=mRNA_L-elsbetiae_contig8530.17566.1|Name=mRNA_L-elsbetiae_contig8530.17566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2952bp|location=Sequence derived from alignment at L-elsbetiae_contig8530:3291..7393+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGTGGTGTGTTGTGTGTGCGCGCACAAAATTCGACATGTTCCGATC
TTTCTTCGGCACGACCGCTGCAGGCGAGGACGGGGGCGCTGGTGCTGCCG
GGGGCGGTGGAGGCAAGCCATCGGGGCCGCAATCAGCTCGGAAAGGCGGC
ACCTCTCAGGCCTCTTCTACGCCTTCTGCCAAGGACAGCGGAGGCTTCTT
CCAGCTCGAGCCAACCAACACCTCTGGCGGCGGAGTGGTGTGTTGTGTGT
GCGCGCACAAAATTCGACATGTTCCGATCTTTCTTCGGCACGACCGCTGC
AGGCGAGGACGGGGGCGCTGGTGCTGCCGGGGGCGGTGGAGGCAAGCCAT
CGGGGCCGCAATCAGCTCGGAAAGGCGGCACCTCTCAGGCCTCTTCTACG
CCTTCTGCCAAGGACAGCGGAGGCTTCTTCCAGCTCGAGCCAACCAACAC
CTCTGGCGAGGGGTCACTGTTCGGCGACTTGGAGGTCAAGCCCCCAGCAA
CGGATGCCAAGCCCCCTCCAATGAAAAAGCCCCCGGCTGCTGAGACGAGG
GGTCACTGTTCGGCGACTTGGAGGTCAAGCCCCCAGCAACGGATGCCAAG
CCCCCTCCAATGAAAAAGCCCCCGGCTGCTGAGACGGAGTCCGCGGGAGG
CGTGTTTTCGGCGTTTCAGTTCATGGCAACCCCCGCGTCCGCCACCGCCG
GCGCCGCCGGCGCCGGCGCCGCAGGCGCCGCCCCGCATTCTTCCTCCGGC
GACCCGTCTGCCCCGTCCGCCCTGCTGTCACCCGCGTCGGTACCTATGAC
GGGGGGCGACGGAGACGAAGCCCCCGGCAGCGGCGGGGCGGGCGTAGAGA
TGTCGGCCTTCTCTTTTCTGGCCGACGATTCCCGCGCCGAGAGCGACGCC
GCCGCAGCAACGGGGGTGGCCCCGTCGGAGGAGGCGAGGGGGGGCGAGCC
CGAGAGCGCCCCCGGGGACCCCCCACGCAAACAGCAGCACGCCCCCCTGT
CCTCGTTTTCGTTCTTGTCCGCCGGGGGCGACGCAGGCGGGGGGGGCTTC
GCGGCTGCTGCGGGTGCCGGCGGCGGCGAGGACGCCGTTACTTCTAAGGA
GGGCCCCGAGGAGAACGTTTTTTACGCGACGCCCGCCGCCGGCGCGGCCT
TGCCGACGCCCTCCGAAGCCGGCGGTGTCAATCAGCAATCCTCGGCCGGG
AGGGACAGCCACGGCGGCGGGAGCGGCGGCCAGCGAACTCCCAGCCTCGC
CAGCGGGGCCTCTTCTCCGTCTTCTTCTGCCCAGGGGGCGGCGGCGGCGG
CCGCTAGCGCTACCGGGACGAGCGGCGCCACGGCGGCCGAGGAAGGAGTG
GGGAAGAAAGCGGGAGGCGGTGTTACCGCTGCGGGGGCGGGAGGAGTCCC
CTCGTGGAAGCCCTCGTCGACCGTTGTCCGCAAGAAGAGGACGGCCAGGA
GGGTGGGCTACGCTCGGGACGAGACCCTGTCCTCCTCCTCCTCTGCTACA
CGTGTTGCTTCGCCGTTGTCGCTGCCATCATCCGCTGCTGCTGCTGCTGC
TGCTGCTGCGCGTGTTGCTTCGCCATTGTCGCTGCCATCATCATCCGCGT
CCAAATCTGGAATGGCCGATACGCCGCTAAGCTCCCCGCTGTCGGCGGTG
GGACAAAAAGTCCTTGCCGCCGGCGGCGGCAAGGGCGCCCCCCCGCCCGT
GGGGGCAGCCGCTGGGGGTGGAGGCGTCTCGCACGTGCCGGAAGCGGGGT
CTAACTACGAAGCCCCCTCTGTATCTTTCCCCGCCAAGAAGGAGGAGTCC
GCGGGAGGCGTGTTTTCGGCGTTTCAGTTCATGGCAACCCCCGCGTCCGC
CACCGCCGGCGCCGCCGGCGCCGGCGCCGCAGGCGCCGCCCCGCATTCTT
CCTCCGGCGACCCGTCTGCCCCGTCCGCCCTGCTGTCACCCGCGTCGGTA
CCTATGACGGGGGGCGACGGAGACGAAGCCCCCGGCAGCGGCGGGGCGGG
CGTAGAGATGTCGGCCTTCTCTTTTCTGGCCGACGATTCCCGCGCCGAGA
GCGACGCCGCCGCAGCAACGGGGGTGGCCCCGTCGGAGGAGGCGAGGGGG
GGCGAGCCCGAGAGCGCCCCCGGGGACCCCCCACGCAAACAGCAGCACGC
CCCCCTGTCCTCGTTTTCGTTCTTGTCCGCCGGGGGCGACGCAGGCGGGG
GGGGCTTCGCGGCTGCTGCGGGTGCCGGCGGCGGCGAGGACGCCGTTACT
TCTAAGGAGGGCCCCGAGGAGAACGTTTTTTACGCGACGCCCGCCGCCGG
CGCGGCCTTGCCGACGCCCTCCGAAGCCGGCGGTGTCAATCAGCAATCCT
CGGCCGGGAGGGACAGCCACGGCGGCGGGAGCGGCGGCCAGCGAACTCCC
AGCCTCGCCAGCGGGGCCTCTTCTCCGTCTTCTTCTGCCCAGGGGGCGGC
GGCGGCGGCCGCTAGCGCTACCGGGACGAGCGGCGCCACGGCGGCCGAGG
AAGGAGTGGGGAAGAAAGCGGGAGGCGGTGTTACCGCTGCGGGGGCGGGA
GGAGTCCCCTCGTGGAAGCCCTCGTCGACCGTTGTCCGCAAGAAGAGGAC
GGCCAGGAGGGTGGGCTACGCTCGGGACGAGACCCTGTCCTCCTCCTCCT
CTGCTACACGTGTTGCTTCGCCGTTGTCGCTGCCATCATCCGCTGCTGCT
GCTGCTGCTGCTGCTGCGCGTGTTGCTTCGCCATTGTCGCTGCCATCATC
ATCCGCGTCCAAATCTGGAATGGCCGATACGCCGCTAAGCTCCCCGCTGT
CGGCGGTGGGACAAAAAGTCCTTGCCGCCGGCGGCGGCAAGGGCGCCCCC
CCGCCCGTGGGGGCAGCCGCTGGGGGTGGAGGCGTCTCGCACGTGCCGGA
AGCGGGGTCTAACTACGAAGCCCCCTCTGTATCTTTCCCCGCCAAGAAGG
AG
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