mRNA_L-elsbetiae_contig853.17564.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig853.17564.1
Unique NamemRNA_L-elsbetiae_contig853.17564.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig853.17564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig853contigL-elsbetiae_contig853:16159..20959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF1713, mitochondria
Ec32 orthologEc-05_002590.1
Exons2
Model size892
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig853.17564.1prot_L-elsbetiae_contig853.17564.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig853 16333..20625 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816935.7196977-UTR-L-elsbetiae_contig853:16158..163321622816935.7196977-UTR-L-elsbetiae_contig853:16158..16332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig853 16159..16332 +
1691683924.7235408-UTR-L-elsbetiae_contig853:16158..163321691683924.7235408-UTR-L-elsbetiae_contig853:16158..16332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig853 16159..16332 +
1622816935.7513444-UTR-L-elsbetiae_contig853:20625..209591622816935.7513444-UTR-L-elsbetiae_contig853:20625..20959Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig853 20626..20959 +
1691683924.7555692-UTR-L-elsbetiae_contig853:20625..209591691683924.7555692-UTR-L-elsbetiae_contig853:20625..20959Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig853 20626..20959 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816935.7302358-CDS-L-elsbetiae_contig853:16332..164531622816935.7302358-CDS-L-elsbetiae_contig853:16332..16453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig853 16333..16453 +
1691683924.7336047-CDS-L-elsbetiae_contig853:16332..164531691683924.7336047-CDS-L-elsbetiae_contig853:16332..16453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig853 16333..16453 +
1622816935.741003-CDS-L-elsbetiae_contig853:20362..206251622816935.741003-CDS-L-elsbetiae_contig853:20362..20625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig853 20363..20625 +
1691683924.7457192-CDS-L-elsbetiae_contig853:20362..206251691683924.7457192-CDS-L-elsbetiae_contig853:20362..20625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig853 20363..20625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig853.17564.1

>prot_L-elsbetiae_contig853.17564.1 ID=prot_L-elsbetiae_contig853.17564.1|Name=mRNA_L-elsbetiae_contig853.17564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MAMVRYVPTLCAILEASRWASRVGKWGGPAFSLKVAETLEGARQATTDLF
NPWASAIATGFGQPTFVSQSLDHDQGYEQEGEEIGGLFEGGLWATSVRRK
RVTKMRKHKWRKRRKLERQSASRRANK*
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mRNA from alignment at L-elsbetiae_contig853:16159..20959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig853.17564.1 ID=mRNA_L-elsbetiae_contig853.17564.1|Name=mRNA_L-elsbetiae_contig853.17564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4801bp|location=Sequence derived from alignment at L-elsbetiae_contig853:16159..20959+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGGGGTTCGTACCTGGGTATGCCCGTCGATCCACTCGGCCTTGGCAGG
CATTCAAGAATCATGTCAGTCGCGATCATTCGGCACGTCAGACCTCTGCA
TCTACGGCGGTGATGAGCCTTCGTCGAGACGAGAGGTTCATCATTGGGTC
GAAGGAGGAGAAGGAGCGAAGGGTATGGCTATGGTGCGTTACGTGCCGAC
ATTATGCGCCATTTTGGAGGCATCGAGATGGGCAAGCCGGGTGGGGAAGT
GGGGAGGTCCTGCTTTCTCGCTGAAAGTTGCTGAGACTTTGGAAGGTGCG
TCTACAGCAGTAGGGATGTGTGTGTTACATATTATAGGTGATAGAGCAGT
TGACGCGGGCGTGCTACTGCACTCTAGCTGGATGGCGCCTCTCCGTCACC
TCGTCAAGTGCTGTATCAAGCGGCGTTTTGTTTGTGGAGCTGAAACAGCG
ATTTACGTACATTTCTCCTGGTCCACATACCGAGGAAACAAAGGGAACAA
AGGCACCCTCTTCACACACCCTGTACAGCTGTACAGATACTAGATACAAA
CGTTGCTTTAGCCAGGGTAATCGTCGGTAGACAACTAGTTGCATAGCCTT
TTAAAACAGTGGGTGCCTGCAAACCAGACATCTAGTTGCGCAGTATTTTG
TGGTTGTGCAGCTTTTACAACAGCTGTAGACATATAAAAAGAAAAACACA
AGCGGACGCACTAAAATCAGGTTACATAGATTGAGCAAAATATCCCTCGT
GTTTAAAACTCGGTTCACGGTGATTTCAACAAATATCGAGATCTTCACGG
ACGAACACGCGGTTATGGTGTGCAAGGTATGCGAACATTTGCCCTTGCCC
ACATTTGCCCTTCATGAACTCTCCTCGGGGTCGGCATTCTCGCTCGGTGT
GAGGAGGAAAAAAGAGAGAGCTGGGAGGAGGGAGTAGACTAGTTATCTCT
CTTGTGCCAGCTGTGCCCATCATCAGTAGTACCTGTGGCCGCGTGTATCG
ACCTTTTGCATGCTGTGTGTGTGTGCCCAGCTGTGTGCGGGGTTAGGTTG
GTGTGTAGTGTGTGGTGTGCAGGGCAAGTCTATTCGTATCGGATTAATAA
TCTTGTTTGGGGCTCCTAACATGGATTGGCAGCGAATCCCTGTGATGGAG
GGTCCAATCGGCCTTACATTTTAAACTCAATCCATCGAATGATCGGCCTC
TTCCACTGGATCATCGATATATTTGGAGTTTTAAATATGTCTAGTAGTTG
CCTGCCGACAACTAGTTGCGCAGCATCTCGAAAGAGAAATTTGTCTGCAG
ACAACTACGACGTATTTAGTTGCGAAAGTTGTCCCAAGTAACAACGAGTT
TGAGCGAGGTTTTGGGAGGAAGAGGGAGTTGCAGAGTTTTCAAAAGCCGG
ATAGATAATATCAAGATTCAACAGTGCTCCAAGCGTGCACGCAATACCAC
TTACACCGCCAGAAGCCGGACAGCAAACACACATCGTGGGACTACGTGTC
GACATTTCGGCAGTACACAGCTTTTTTGCTTTCGCGAAACAACCCCTGAA
CAGTACAAGTAGGCCCCTACAAACGATCTTGGTAAGAGCCTTCTGGTGCT
CATCACTTCTCTGCTTCTGTTAACGGCTCCAGAGTTATGTATGAGGCACC
TCATTTTGCTGCGCGACGACAGCACCATATTTGGTTGAAAAATATTTCAC
CCTGTCTGCGCACCTATTACCACTGGCAACTAGGGTGTTTGCCATTTGCT
CAGCTAGTTGAAGAGCCAATCCAAACAGTAATATCTGTTTAAAGAGCCCA
CGGGATTTGCCCGGCTAAACAGGGAGCGAAAAGGCTGTGTTTGCGGAAAG
TATTTGGCTATTTCAACAGTCCTGAAGATCCTCGGAAAACGAACGATTTG
AATGCCGGAGAGGCACCGACTCGGCTACCGATATACTCCTACTATCGTTC
GCCGGATACGCGAGAAGAAGTGTGGCCGCTTGATTCGCCTCGCGCGTGTG
AGCTCGCGATGTGCCATCGTTAGGATCAACGCGTCTTCGTCGTCATACAT
ACATATTCTTCCAACACGTTGACCGCCGCCAAACGCAACAGACGCCTCGC
CAGCGTTCATGCCTGCTGCACACTGGTGCACACACAGTTGCCGTAAAATC
TTTCTGCGCCCCGACATGCTCTCCGTACTACTGCTGTGGGTACATGGGGA
GAAGAGAGAGAATAACGTGTTTGCGCTTAGTCCAATGTACTAGCTAACGA
CCAGATCGGGGGGATTATTTCCCGACAGAAAGACTCTGCGGAAATGTTAG
AGAAGGTTCGAAGTACATTGTACTAGGAGATATGCGCAGATTTGCTTCAC
TACGAAAACCCGCACGTACAAAGTACTACCGGGAGAGCATCATTTCCCAG
GAACTATCACCGCCCAACAGTCTTCGGACCAGCCCCCCTGATTGGTGCGC
GGTCCTATCGAGCTCTTCTATTTGGCGTGAAAATGCCCGGACTTCAAGCC
ACGTCGGTCAAAGCATGCGGCGCCTGTGCGACACGGCAAACGACACGACT
CGCGCCGACTGCCAACGCCACACCTTACTGCCTGCCCCCTATAGCCCCGC
ACGAGACACCCTACAATCCTCGCTGAAGAGGGAGATGGGGAGGGGTGGGT
GTGTGCGCGGCGTGCAACTAAATAACGCCCGGTACCAGTGCCGCGGTGGC
TTTTAGTCGCCGCTGCAGCAGAGAACGTGCAAGAAGAGATAAACTGGAGC
TCGTTGCTGCCGTGGCTGCCGTAAGATGTATCAACACTTCTTGTACAGTC
GACCGCACTGTGCTACGGTCGGTGAGGAGGGGTACAACACAGTAGAGACC
TGATGATCGACGACCTCACCATGATCAAGAGGATGACATCAAGAGACTGT
AGATAGACTATGGAATATTTGCTTATTTTTGTTTTGAAAGCTGCATGCGA
TGTGGGGCAGACTATAGCTAAAACCGATCGAGTTTTGCAGGCGAGACGGC
TTTTGTCTTCTGCTACTGCTGCGATGGGTTGTATGATGGAAGGATGGGTT
TTGAGGAGAGGGGGCTGTGTTTTCGTGGGCGGCTGAAAGGCATTCGATGC
CACACCCAACACACGATCTTCTGACCACCTGAACTCCAAAACGACAGACC
ATTTGCCAAAAATCCGAGTTCTGAGAAGAAATCAAACTGGACAAAGCGCA
CACCGATTTCCCCATGTTTTGACCACTACAATGTATTAGTGACGGCAAAC
GACTACCAAGTAGTTCACCCTGATACATTAAACTAGGCGCAAACACGTTA
ATCGGGGGCACACAACTTGCCGTCCGGGAATTCCGAGATAGATACCTCTG
GTGGCACGATAATTACTCGAGAAGGATTGTCACTGGTAGTGCGATGAAGA
GGCGAATCGTGGTAGAAGAGCATTACCCTGCCTCTGTTTGTCTGTCTGCC
TGTCGCAGTGTGTTTATCGCGCTCTCTATAAATATGCAGAACAGTAGTAT
TTTTTTTGGAAATTTGACTCTCGCCCAAAGGGTTGTGCCCAAAAGATCAA
TCACACCCGAGCCGTTGTTGGTGCCATTCTGGGGTCGCACGTTTTTGGTA
CCATTGCCCTCCTGGGCGCTCCGACATTCCCATGAAGCACTCTGTACACA
TGTGTAATGTTGCGCACACGGGTACACTCGCGGCAGCGCCTCTGTTTGTC
TATCTGTGTGTGCGCCACGCTCAACTGCTTTACATGGATTCATTTTTGGG
AAACTGACTCTGATTTTGTGTACATAACGAACTGGTGACGGCGCCGAAGG
GTCAGTGCGAGCCGAAAGTGTACCCTGCGAAGCGCCCTATGTACACACGT
GCATTGTATACACGGGCACACTCGCGGCAGCGCCGTCAAAACCAGGAGGG
CAGTTAGGCTTGCACATTATTTGCACTCGCTGGCAAGTCCACTTTGCGGC
CATCTGTCCCTGCATGTGATCGCCTGCCTCCGAGCGGCGGCAGTAAACAA
ACCCATCCAAGCAGGTGCCTTATATTGTAGCGATGATAGGCGGTGCCGTG
CTCAAAATCGAAGCAGGCTCCCATGTTTGACAAAGGACTAGCCCCGTGCA
CCCGCACTTGACGCTGCTATATCACAGATTTCCGCTGTTTTGTTTTCAAA
TCGGGATTTCCCTTCACCCGTAAACAAATGCCTTTGATTGCGCTCGCTGT
GCAGGTGCCAGGCAGGCGACGACAGATCTGTTCAACCCCTGGGCTTCCGC
GATAGCTACAGGATTTGGTCAACCGACATTTGTGTCGCAGTCGCTGGATC
ATGACCAGGGATATGAGCAGGAGGGAGAGGAAATTGGGGGGTTATTCGAA
GGGGGCTTGTGGGCGACTAGCGTGAGGCGGAAGCGCGTGACGAAGATGAG
AAAGCACAAGTGGAGGAAGAGGAGGAAGCTCGAGCGCCAATCGGCCTCTC
GTAGAGCTAACAAGTAGGGTAATTTTATGCCAAGTATTGGAGGCTGTGGG
CGTTTCTTGTGCTGGATCCGTGATTTGGTGACTGGGTTACCTCAGAGGGT
ATTGACGCAAGTAAGTGCCGTTCCGAGCAGTTGGCAAACCAACTTGCAGA
GGGCACAACGGTTGTAGACCGTGTGCGAACGTACGTTGCTACTCACGGAC
AACAATATGTTCCGGTATTGAGCGCGTATTGTTCAGGGCTACTGCCGCAG
CTGCACTGCAGAGTCTGGATTGCTGTTTTCTTCCGCAACCTTTGTGTTGA
CGGTTTTCAATTTTAAAGTGGGTGAACCTTGAAGCGCACGGGCTTGGGGA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig853:16159..20959+

>mRNA_L-elsbetiae_contig853.17564.1 ID=mRNA_L-elsbetiae_contig853.17564.1|Name=mRNA_L-elsbetiae_contig853.17564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig853:16159..20959+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTATGGTGCGTTACGTGCCGACATTATGCGCCATTTTGGAGGCATC
GAGATGGGCAAGCCGGGTGGGGAAGTGGGGAGGTCCTGCTTTCTCGCTGA
AAGTTGCTGAGACTTTGGAAGATGGCTATGGTGCGTTACGTGCCGACATT
ATGCGCCATTTTGGAGGCATCGAGATGGGCAAGCCGGGTGGGGAAGTGGG
GAGGTCCTGCTTTCTCGCTGAAAGTTGCTGAGACTTTGGAAGGTGCCAGG
CAGGCGACGACAGATCTGTTCAACCCCTGGGCTTCCGCGATAGCTACAGG
ATTTGGTCAACCGACATTTGTGTCGCAGTCGCTGGATCATGACCAGGGAT
ATGAGCAGGAGGGAGAGGAAATTGGGGGGTTATTCGAAGGGGGCTTGTGG
GCGACTAGCGTGAGGCGGAAGCGCGTGACGAAGATGAGAAAGCACAAGTG
GAGGAAGAGGAGGAAGCTCGAGCGCCAATCGGCCTCTCGTAGAGCTAACA
AGTAGGTGCCAGGCAGGCGACGACAGATCTGTTCAACCCCTGGGCTTCCG
CGATAGCTACAGGATTTGGTCAACCGACATTTGTGTCGCAGTCGCTGGAT
CATGACCAGGGATATGAGCAGGAGGGAGAGGAAATTGGGGGGTTATTCGA
AGGGGGCTTGTGGGCGACTAGCGTGAGGCGGAAGCGCGTGACGAAGATGA
GAAAGCACAAGTGGAGGAAGAGGAGGAAGCTCGAGCGCCAATCGGCCTCT
CGTAGAGCTAACAAGTAG
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