mRNA_L-elsbetiae_contig852.17551.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig852.17551.1
Unique NamemRNA_L-elsbetiae_contig852.17551.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig852.17551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig852contigL-elsbetiae_contig852:10029..11168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size835
Cds size834
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816934.594341-CDS-L-elsbetiae_contig852:10028..104061622816934.594341-CDS-L-elsbetiae_contig852:10028..10406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig852 10029..10406 -
1691683923.898013-CDS-L-elsbetiae_contig852:10028..104061691683923.898013-CDS-L-elsbetiae_contig852:10028..10406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig852 10029..10406 -
1622816934.605025-CDS-L-elsbetiae_contig852:10712..111681622816934.605025-CDS-L-elsbetiae_contig852:10712..11168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig852 10713..11168 -
1691683923.9091623-CDS-L-elsbetiae_contig852:10712..111681691683923.9091623-CDS-L-elsbetiae_contig852:10712..11168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig852 10713..11168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig852.17551.1prot_L-elsbetiae_contig852.17551.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig852 10029..11168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig852.17551.1

>prot_L-elsbetiae_contig852.17551.1 ID=prot_L-elsbetiae_contig852.17551.1|Name=mRNA_L-elsbetiae_contig852.17551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=278bp
KFRGNGAGDGTSRGSDCRGRSRGQSIEDEPLFSSNPLPSPGPPPLAMSRR
SVSLSPARQATTARRTVGAGAGGTPSSRGARGDRSRRGAAAAAASTGDRS
GAHVIASSGGGGTPSPSSSSVVTPSPAAAPASRSGRSSATKATTSRGASS
VKAAKVKGTPPRSSRVCKAELESSSFHSPEPTTSNSASMRRGRRSGGGGS
VQKTRHDKHQGRSRAPPTTPTASPKPPTAAAAARASATAKATAPFSLSSS
DSSSSDSAETAVSAAPGAAGAGAGGEGG
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mRNA from alignment at L-elsbetiae_contig852:10029..11168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig852.17551.1 ID=mRNA_L-elsbetiae_contig852.17551.1|Name=mRNA_L-elsbetiae_contig852.17551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig852:10029..11168- (Laminarionema elsbetiae ELsaHSoW15)
AAATTTCGAGGCAACGGCGCCGGAGACGGGACGAGCCGCGGCTCCGACTG
CCGCGGAAGGAGCCGGGGGCAGAGCATCGAAGACGAGCCCCTTTTCTCGT
CGAACCCGCTTCCGTCGCCGGGCCCGCCCCCGCTCGCCATGTCGAGGCGC
TCCGTGTCACTCTCCCCGGCGAGACAGGCGACGACTGCGCGAAGGACGGT
GGGCGCCGGCGCCGGCGGCACCCCGTCCTCCCGAGGGGCCAGAGGCGACA
GGTCTCGGAGGGGGGCAGCGGCAGCGGCAGCGTCGACCGGGGACAGGTCG
GGTGCGCACGTGATCGCCTCCAGCGGCGGCGGCGGCACGCCGTCGCCGTC
GTCGTCGTCGGTCGTCACTCCGAGCCCGGCGGCCGCGCCCGCGTCGAGAT
CTGGGCGGTCGTCTGCAACCAAGGCCACTACTTCGCGGGGTGCTTCGTCT
GTCAAGGTAAGCGCCGCGAACGTACGTATGTCCATGCGTGCGGGAACAAG
CCAGAAGAGCTACTAGCTACATACCTATGCGTGTTGTATGTGCGTATAGG
TACGCATTTAGGCCTAATGCTAAGGGTAGGTTCCAAATTGGAGTTTGCGG
GGGCCGCTGACAAAAAAAATCCGGTTACATCTCCCGGGGGGTTTTTCAGT
TGGAATCCGTGAAAATGGTCATTTTCGCTGCGTGCTCTTCTCAACAGAGA
CCCGTTTTATCGTCTATCCCGTGTGCGTGCGTGCGTGCGTGCGTGCGTGC
GTGCGTGTGCAGGCGGCAAAGGTCAAGGGCACCCCCCCCCGCTCCTCCCG
CGTCTGCAAGGCCGAACTGGAGTCTTCCTCGTTCCACAGCCCGGAGCCGA
CGACATCGAACTCCGCGTCGATGAGACGCGGAAGAAGGAGCGGCGGCGGC
GGCTCCGTGCAGAAGACGAGGCACGATAAGCACCAGGGACGGTCCCGGGC
GCCCCCCACCACGCCCACGGCGTCGCCGAAACCCCCGACGGCAGCGGCAG
CGGCAAGGGCGTCCGCCACGGCGAAGGCGACGGCCCCGTTCTCGTTATCG
TCGAGCGACAGCAGTAGCAGTGATAGCGCGGAGACGGCGGTCTCGGCGGC
TCCGGGGGCAGCGGGAGCAGGGGCGGGAGGAGAGGGAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig852:10029..11168-

>mRNA_L-elsbetiae_contig852.17551.1 ID=mRNA_L-elsbetiae_contig852.17551.1|Name=mRNA_L-elsbetiae_contig852.17551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1668bp|location=Sequence derived from alignment at L-elsbetiae_contig852:10029..11168- (Laminarionema elsbetiae ELsaHSoW15)
AAATTTCGAGGCAACGGCGCCGGAGACGGGACGAGCCGCGGCTCCGACTG
CCGCGGAAGGAGCCGGGGGCAGAGCATCGAAGACGAGCCCCTTTTCTCGT
CGAACCCGCTTCCGTCGCCGGGCCCGCCCCCGCTCGCCATGTCGAGGCGC
TCCGTGTCACTCTCCCCGGCGAGACAGGCGACGACTGCGCGAAGGACGGT
GGGCGCCGGCGCCGGCGGCACCCCGTCCTCCCGAGGGGCCAGAGGCGACA
GGTCTCGGAGGGGGGCAGCGGCAGCGGCAGCGTCGACCGGGGACAGGTCG
GGTGCGCACGTGATCGCCTCCAGCGGCGGCGGCGGCACGCCGTCGCCGTC
GTCGTCGTCGGTCGTCACTCCGAGCCCGGCGGCCGCGCCCGCGTCGAGAT
CTGGGCGGTCGTCTGCAACCAAGGCCACTACTTCGCGGGGTGCTTCGTCT
GTCAAGAAATTTCGAGGCAACGGCGCCGGAGACGGGACGAGCCGCGGCTC
CGACTGCCGCGGAAGGAGCCGGGGGCAGAGCATCGAAGACGAGCCCCTTT
TCTCGTCGAACCCGCTTCCGTCGCCGGGCCCGCCCCCGCTCGCCATGTCG
AGGCGCTCCGTGTCACTCTCCCCGGCGAGACAGGCGACGACTGCGCGAAG
GACGGTGGGCGCCGGCGCCGGCGGCACCCCGTCCTCCCGAGGGGCCAGAG
GCGACAGGTCTCGGAGGGGGGCAGCGGCAGCGGCAGCGTCGACCGGGGAC
AGGTCGGGTGCGCACGTGATCGCCTCCAGCGGCGGCGGCGGCACGCCGTC
GCCGTCGTCGTCGTCGGTCGTCACTCCGAGCCCGGCGGCCGCGCCCGCGT
CGAGATCTGGGCGGTCGTCTGCAACCAAGGCCACTACTTCGCGGGGTGCT
TCGTCTGTCAAGGCGGCAAAGGTCAAGGGCACCCCCCCCCGCTCCTCCCG
CGTCTGCAAGGCCGAACTGGAGTCTTCCTCGTTCCACAGCCCGGAGCCGA
CGACATCGAACTCCGCGTCGATGAGACGCGGAAGAAGGAGCGGCGGCGGC
GGCTCCGTGCAGAAGACGAGGCACGATAAGCACCAGGGACGGTCCCGGGC
GCCCCCCACCACGCCCACGGCGTCGCCGAAACCCCCGACGGCAGCGGCAG
CGGCAAGGGCGTCCGCCACGGCGAAGGCGACGGCCCCGTTCTCGTTATCG
TCGAGCGACAGCAGTAGCAGTGATAGCGCGGAGACGGCGGTCTCGGCGGC
TCCGGGGGCAGCGGGAGCAGGGGCGGGAGGAGAGGGAGGCGCGGCAAAGG
TCAAGGGCACCCCCCCCCGCTCCTCCCGCGTCTGCAAGGCCGAACTGGAG
TCTTCCTCGTTCCACAGCCCGGAGCCGACGACATCGAACTCCGCGTCGAT
GAGACGCGGAAGAAGGAGCGGCGGCGGCGGCTCCGTGCAGAAGACGAGGC
ACGATAAGCACCAGGGACGGTCCCGGGCGCCCCCCACCACGCCCACGGCG
TCGCCGAAACCCCCGACGGCAGCGGCAGCGGCAAGGGCGTCCGCCACGGC
GAAGGCGACGGCCCCGTTCTCGTTATCGTCGAGCGACAGCAGTAGCAGTG
ATAGCGCGGAGACGGCGGTCTCGGCGGCTCCGGGGGCAGCGGGAGCAGGG
GCGGGAGGAGAGGGAGGC
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