mRNA_L-elsbetiae_contig852.17549.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig852.17549.1
Unique NamemRNA_L-elsbetiae_contig852.17549.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig852.17549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig852contigL-elsbetiae_contig852:7015..7442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size428
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig852.17549.1prot_L-elsbetiae_contig852.17549.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig852 7036..7377 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816934.6992226-UTR-L-elsbetiae_contig852:7014..70351622816934.6992226-UTR-L-elsbetiae_contig852:7014..7035Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig852 7015..7035 +
1691683923.9528742-UTR-L-elsbetiae_contig852:7014..70351691683923.9528742-UTR-L-elsbetiae_contig852:7014..7035Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig852 7015..7035 +
1622816934.7241347-UTR-L-elsbetiae_contig852:7377..74421622816934.7241347-UTR-L-elsbetiae_contig852:7377..7442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig852 7378..7442 +
1691683923.981499-UTR-L-elsbetiae_contig852:7377..74421691683923.981499-UTR-L-elsbetiae_contig852:7377..7442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig852 7378..7442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816934.712641-CDS-L-elsbetiae_contig852:7035..73771622816934.712641-CDS-L-elsbetiae_contig852:7035..7377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig852 7036..7377 +
1691683923.9642677-CDS-L-elsbetiae_contig852:7035..73771691683923.9642677-CDS-L-elsbetiae_contig852:7035..7377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig852 7036..7377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig852.17549.1

>prot_L-elsbetiae_contig852.17549.1 ID=prot_L-elsbetiae_contig852.17549.1|Name=mRNA_L-elsbetiae_contig852.17549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MYKAPKPNFDPSPPHPCSLPLPPPANIFQLHTRSTDRQSGGAATAAAARR
ACRKRLNKTASEYIWRFPAGVHAHYTAGTYISDVVSACPPPLRGGSLLPQ
PQPVRRSRERDRK*
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mRNA from alignment at L-elsbetiae_contig852:7015..7442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig852.17549.1 ID=mRNA_L-elsbetiae_contig852.17549.1|Name=mRNA_L-elsbetiae_contig852.17549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=428bp|location=Sequence derived from alignment at L-elsbetiae_contig852:7015..7442+ (Laminarionema elsbetiae ELsaHSoW15)
GCATACACGGCACCTCACTACATGTACAAGGCGCCTAAACCAAACTTCGA
CCCCTCCCCCCCCCACCCGTGTTCGCTGCCGCTACCGCCACCGGCGAACA
TATTTCAGCTGCACACACGATCAACCGACCGGCAAAGCGGTGGCGCGGCC
ACAGCAGCAGCAGCGCGCCGAGCGTGCAGAAAAAGATTAAATAAAACAGC
ATCGGAATATATTTGGCGCTTCCCGGCGGGGGTGCACGCGCACTACACAG
CAGGTACCTACATCTCAGACGTAGTTTCAGCGTGCCCCCCCCCCCTACGA
GGAGGCAGCCTTTTACCCCAACCACAGCCCGTCCGTCGCTCCCGTGAAAG
AGATAGAAAATAGATATGTAGCGAGAGGGGGCCACGCAGCGTGGCCCCGC
CCGCAGGCCGGCTGCAAACATACTAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig852:7015..7442+

>mRNA_L-elsbetiae_contig852.17549.1 ID=mRNA_L-elsbetiae_contig852.17549.1|Name=mRNA_L-elsbetiae_contig852.17549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig852:7015..7442+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACAAGGCGCCTAAACCAAACTTCGACCCCTCCCCCCCCCACCCGTG
TTCGCTGCCGCTACCGCCACCGGCGAACATATTTCAGCTGCACACACGAT
CAACCGACCGGCAAAGCGGTGGCGCGGCCACAGCAGCAGCAGCGCGCCGA
GCGTGCAGAAAAAGATTAAATAAAACAGCATCGGAATATATTTGGCGCTT
CCCGGCGGGGGTGCACGCGCACTACACAGCAGGTACCTACATCTCAGACG
TAGTTTCAGCGTGCCCCCCCCCCCTACGAGGAGGCAGCCTTTTACCCCAA
CCACAGCCCGTCCGTCGCTCCCGTGAAAGAGATAGAAAATAGATGTACAA
GGCGCCTAAACCAAACTTCGACCCCTCCCCCCCCCACCCGTGTTCGCTGC
CGCTACCGCCACCGGCGAACATATTTCAGCTGCACACACGATCAACCGAC
CGGCAAAGCGGTGGCGCGGCCACAGCAGCAGCAGCGCGCCGAGCGTGCAG
AAAAAGATTAAATAAAACAGCATCGGAATATATTTGGCGCTTCCCGGCGG
GGGTGCACGCGCACTACACAGCAGGTACCTACATCTCAGACGTAGTTTCA
GCGTGCCCCCCCCCCCTACGAGGAGGCAGCCTTTTACCCCAACCACAGCC
CGTCCGTCGCTCCCGTGAAAGAGATAGAAAATAG
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