mRNA_L-elsbetiae_contig8512.17539.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8512.17539.1
Unique NamemRNA_L-elsbetiae_contig8512.17539.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: D7G9A7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A7_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.140e-51
Identity = 96/149 (64.43%), Postives = 114/149 (76.51%), Query Frame = 1 
Query:    1 TTVVLFWVPIFVPLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLA--DQLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELNLK 441
            +T VLFW P+FVPLLKYLQ D  Y+  QFTFGFS LPTPAQ+RASLA  DQLG  DLR + R ++  R APE+ DF KAC+ RE+VE Y E QA T AI+DRF+ EG EQE+++S  CR RVLES + RYNIFDEAIAEVL +ME+N K
Sbjct:  231 STAVLFWYPVFVPLLKYLQQDYAYI-SQFTFGFSKLPTPAQIRASLAADDQLGAGDLRRKIRNYSLSRAAPEVSDFLKACIGREKVEEYLELQAVTAAIVDRFLVEGGEQEMDISQGCRKRVLESELARYNIFDEAIAEVLSVMEVNFK 378
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: D7G0B4_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0B4_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 5.560e-43
Identity = 74/144 (51.39%), Postives = 108/144 (75.00%), Query Frame = 1 
Query:    4 TVVLFWVPIFVPLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLADQLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELN 435
            ++VLFW PI  P+ +YL  D +Y+   +T GFS LPTPAQM+ SL DQL +++LR  F++ AE R+A ELP+FY+AC+DR+++E +F RQAAT AIIDRF+  GSEQE+N+S   R ++L + +T YNIF+EA++  + +M+ N
Sbjct:  186 SLVLFWPPIAEPMYRYLTGDVDYL-NSYTQGFSTLPTPAQMKGSLRDQLSLDELRTEFQKFAENRMARELPEFYQACLDRDEIEDFFGRQAATTAIIDRFIRSGSEQELNISDRIRNKILLTEITSYNIFNEAMSVAVTMMDTN 328
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: D7G7J3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J3_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 9.040e-43
Identity = 76/145 (52.41%), Postives = 106/145 (73.10%), Query Frame = 1 
Query:    1 TTVVLFWVPIFVPLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLADQLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELN 435
            ++++LFW PI  PL + L  D +Y++  +T GFS LPTPAQMR+ L DQL +E+LR  F + A+ +VA ELPDFYKAC+DRE +  +FERQA T AIIDRF+   + QE+N+SG  R ++L + +T YNIFDEA++ VL +M+ N
Sbjct:  213 SSIILFWPPIIEPLYRKLSGDEDYLYS-YTKGFSQLPTPAQMRSCLKDQLSLEELRCEFEKFADSKVARELPDFYKACLDREDISDFFERQAVTTAIIDRFIRVDAVQEVNISGALRNKILTTEITSYNIFDEAMSAVLKIMDTN 356
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.640e-41
Identity = 74/146 (50.68%), Postives = 104/146 (71.23%), Query Frame = 1 
Query:    1 TTVVLFWVPIFVPLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLADQLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELNL 438
            +T  L W  +  P++K    D  Y+W  FT GFS +P+PAQ++ASLA+QL VE LR+ FR++ E +VA EL DFY   +DRE+++GYF RQAATM I+++++ EGS  ++N+SGECR  +L + VT Y+IFD A AEVL +ME  L
Sbjct:  226 STYTLLWGSVGEPVVKKFTGDEGYLWS-FTKGFSEMPSPAQLKASLAEQLSVEQLRVEFRRYIETKVAQELVDFYLDSLDREEIKGYFGRQAATMRIVEQYIREGSPDQVNISGECREEILSTDVTAYDIFDRARAEVLAVMEATL 370
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: D7FIS3_ECTSI (Similar to retinally abundant regulator of G-protein signaling hRGS-r n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS3_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.460e-41
Identity = 77/147 (52.38%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:    1 TTVVLFWVPIFVPLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLADQLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELNLK 441
            TT +L W  I  P +K +  D EY+W  +T GFS LP+PAQ++ASLA+QL VE LR  FRQ+ + +VA EL DFY   +DRE+V G+FERQAATM I++R++ E +  ++N+S ECR ++L + VT Y+IFDEA AEVL +ME N +
Sbjct:   79 TTYILLWGSIREPFMKKILGDDEYLWS-YTKGFSELPSPAQLKASLAEQLSVEQLRDEFRQYIKTKVAQELIDFYLDSLDREEVMGFFERQAATMRIVERYIREDAPDQVNISEECREKILATDVTAYDIFDEARAEVLVVMETNFQ 224
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 6.120e-41
Identity = 75/147 (51.02%), Postives = 105/147 (71.43%), Query Frame = 1 
Query:    1 TTVVLFWVPIFVPLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLADQLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELNLK 441
            TT  L W  I  P+ + L  D EY++  FT GFS +P+PAQ++ASLA+QL V+ LR+ FR++ E  VA EL DFY   +DRE+++GYF RQAATM I+++++ EGS  ++N+SGECR  +L + VT Y+IFD A AEVL +ME N +
Sbjct:  202 TTYTLLWGSIGEPIKRKLAGDTEYLYS-FTKGFSEMPSPAQLKASLAEQLSVQQLRVEFRKYVETMVAQELVDFYLDSLDREEIKGYFGRQAATMRIVEQYIREGSPDQVNISGECREEILSTDVTAYDIFDRARAEVLAVMETNFQ 347
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: D7FU07_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU07_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.700e-40
Identity = 72/141 (51.06%), Postives = 100/141 (70.92%), Query Frame = 1 
Query:   19 WVPIFVPLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLADQLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELNLK 441
            W  I  P+ + L  D EY+   FT GFS +P+PAQ++ASLA+QL VE LR  FR++ E +VA EL DFY   +DRE+++ YF RQAATM I+D+++ EG+ +++N+SG CR  +L + VT Y+IFD A AEVL LME N +
Sbjct:    3 WGSIGEPIKRKLAGDTEYL-LSFTKGFSEMPSPAQLKASLAEQLSVEQLRDEFRKYIEMKVAQELMDFYIESLDREEIKEYFPRQAATMRIVDQYIREGAAEQVNISGRCREEILSTDVTAYDIFDHARAEVLALMETNFQ 142
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.220e-39
Identity = 74/147 (50.34%), Postives = 101/147 (68.71%), Query Frame = 1 
Query:    1 TTVVLFWVPIFVPLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLADQLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELNLK 441
            TT  + W  I  P+LK    D EY+W  FT GFS LP+PAQ++ASLA+QL VE LR  FR++ E +VA EL DFY   +DRE+++ YF RQA TM I+ +++ EG+  ++N+SGECR  +L + VT Y+IFD A  EVL +ME N +
Sbjct:  270 TTHTVLWGSIGEPVLKKWTRDEEYLWS-FTKGFSDLPSPAQLKASLAEQLSVEQLRAEFRRYIETKVAQELVDFYLDSLDREEIKEYFARQAVTMRIVAQYIREGAPDQVNISGECREEILSTHVTAYDIFDRARVEVLTVMETNFQ 415
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: D7FU00_ECTSI (Regulator of G-protein signaling 13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU00_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.520e-39
Identity = 71/135 (52.59%), Postives = 98/135 (72.59%), Query Frame = 1 
Query:   37 PLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLADQLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELNLK 441
            PL+K  + D EY+W  FT GFS LP+PAQ++ASLA+QL VE LR+ FR + + +VA EL DFY   +DRE++ G+F RQA TM I+ R++ EG+ +++N+SG CR  +L + VT Y+IFD A AEVL LME + K
Sbjct:  155 PLVKKWEGDEEYLWS-FTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMQTKVARELVDFYLESLDREEIHGFFGRQAVTMRIVARYIREGAPEQVNISGACREDILSTDVTAYDIFDRARAEVLALMEGDFK 288
[Close]
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Match: A0A6H5L280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L280_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.020e-39
Identity = 77/123 (62.60%), Postives = 94/123 (76.42%), Query Frame = 1 
Query:   79 QQFTFGFSVLPTPAQMRASLAD--QLGVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDRFVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELNLK 441
            ++FTFGFS LPTPAQ+RASLAD  QLG +DLR + R ++  R APE+ DF KAC+ RE VE Y E QA T AI+DRFV EG EQE+++S  CR RVLES + RYNIFDEAI EVL +ME++ K
Sbjct:   69 KKFTFGFSKLPTPAQIRASLADADQLGADDLRRKIRNYSLSRAAPEVSDFLKACIGRETVEEYLELQAVTAAIVDRFVVEGGEQEMDISQACRKRVLESELARYNIFDEAITEVLSVMEVDFK 191
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8512.17539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G9A7_ECTSI1.140e-5164.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0B4_ECTSI5.560e-4351.39RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G7J3_ECTSI9.040e-4352.41RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ6_ECTSI1.640e-4150.68Similar to regulator of G-protein signaling 16 n=1... [more]
D7FIS3_ECTSI2.460e-4152.38Similar to retinally abundant regulator of G-prote... [more]
D7FTZ7_ECTSI6.120e-4151.02Similar to regulator of G-protein signaling 16 n=1... [more]
D7FU07_ECTSI3.700e-4051.06Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5JJQ0_9PHAE1.220e-3950.34RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]
D7FU00_ECTSI1.520e-3952.59Regulator of G-protein signaling 13 n=1 Tax=Ectoca... [more]
A0A6H5L280_9PHAE2.020e-3962.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8512contigL-elsbetiae_contig8512:4123..8162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue2.7e-36
Seed eggNOG ortholog2880.D7G7J3
Preferred nameRGS1
KEGG koko:K16449
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size441
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8512.17539.1prot_L-elsbetiae_contig8512.17539.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8512 4123..8162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816934.0715153-CDS-L-elsbetiae_contig8512:4122..41831622816934.0715153-CDS-L-elsbetiae_contig8512:4122..4183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8512 4123..4183 -
1691683923.5463798-CDS-L-elsbetiae_contig8512:4122..41831691683923.5463798-CDS-L-elsbetiae_contig8512:4122..4183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8512 4123..4183 -
1622816934.0836232-CDS-L-elsbetiae_contig8512:4544..46961622816934.0836232-CDS-L-elsbetiae_contig8512:4544..4696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8512 4545..4696 -
1691683923.5599139-CDS-L-elsbetiae_contig8512:4544..46961691683923.5599139-CDS-L-elsbetiae_contig8512:4544..4696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8512 4545..4696 -
1622816934.0938458-CDS-L-elsbetiae_contig8512:6513..66601622816934.0938458-CDS-L-elsbetiae_contig8512:6513..6660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8512 6514..6660 -
1691683923.570745-CDS-L-elsbetiae_contig8512:6513..66601691683923.570745-CDS-L-elsbetiae_contig8512:6513..6660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8512 6514..6660 -
1622816934.1054375-CDS-L-elsbetiae_contig8512:8081..81621622816934.1054375-CDS-L-elsbetiae_contig8512:8081..8162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8512 8082..8162 -
1691683923.5816877-CDS-L-elsbetiae_contig8512:8081..81621691683923.5816877-CDS-L-elsbetiae_contig8512:8081..8162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8512 8082..8162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8512.17539.1

>prot_L-elsbetiae_contig8512.17539.1 ID=prot_L-elsbetiae_contig8512.17539.1|Name=mRNA_L-elsbetiae_contig8512.17539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
TTVVLFWVPIFVPLLKYLQHDREYVWQQFTFGFSVLPTPAQMRASLADQL
GVEDLRLRFRQHAEGRVAPELPDFYKACMDREQVEGYFERQAATMAIIDR
FVAEGSEQEINVSGECRARVLESCVTRYNIFDEAIAEVLHLMELNLK
back to top

mRNA from alignment at L-elsbetiae_contig8512:4123..8162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8512.17539.1 ID=mRNA_L-elsbetiae_contig8512.17539.1|Name=mRNA_L-elsbetiae_contig8512.17539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4040bp|location=Sequence derived from alignment at L-elsbetiae_contig8512:4123..8162- (Laminarionema elsbetiae ELsaHSoW15)
ACCACGGTGGTGCTGTTCTGGGTTCCCATCTTCGTGCCCCTCCTCAAGTA
CCTGCAGCACGACCGCGAGTACGTGTGGCAGGTGAGTGAGGTGATGGGAA
TCGATGACGCCGGCGGTAGACACCGCAGACCACAGCGAAAGATGACCACA
CCCATCCTCTCCGCCCCGGGGGGGGGGGGGCGATTTAAGTATAAGAAGTA
TATTTTTCAAGCTTTGTACTTCGGATGTATTGATGTATGTAAAGTAAAAT
TTTGTGAGAGAAATGCCAACACCAGATACGCATGAAGGGTGATGTCCAGG
GAAGATCCCGTCTTGACATCATCTCGGAGACGCAAACCAGTCAGTGGCAT
CCTTGCCCTTTCTGTCGAGAGATCGGCTCAGGGGGTGTCTTGCGTGCGTC
GGACGTTTTCTTCGGACGGTTCGTTGCTTTTTGCCCGGGGTATTTATTTA
TCCTCTTGAGAGAGAGAGAGTTCCACACACAGAGAAGAGGGAACACAGGA
GGGGTAAGGGGGCGAGAGCGTTTCGCTTGGCGTCGGAACGCGCCCACCAC
CAGCACCAGCACCAGCACCAACACCAGCTGCGCCGGAAAAAAAAAAAAAA
AGAGAAAAAAAGAAGAGAAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTT
GCTGCGCTTTTTAATTAATGTATACGAATGTCAGCAGCCTACGTACGTCC
ACTCTGCGAAGAAGTCGTTCCAGAGGGACTGATACTGTTGTAGACAGTCC
CGTTGACAGTCCCGCCACCCGGCCTCTTTTCACTACTGTATACAAATGTC
AGCAGCTTACGTACGTCCAGTCTGCGAAGAAGGAGTCGTTCCAGAGGGAC
TAAGTACTGTTGTCGGAGGCAAACTAACCCCCTGTTTCCCCATCCAAGAT
ATACATACTCGCACAAAAATCCGTAGTTCAATTAAAAACTGGCAATCTAG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCGGTTTTGTGGTTTTCTCGTGAGCTGCTGCTTGCCTT
TTCTTCCTCCCGGGTGTTGGCCTCGACCCCCACCACCCTTTGGCGTCATA
CCTTATTTCTCTGTTCTTCCTCCCATTGTTGGCATATTCGTCGTCTGCCC
CACTGGCCCCCTTCCTCCACTACGACTGGCTAGACGACCCAACCGGGGTT
ACACAGGAGGGGGGGGGATGGACCCCCTCCTGCGGTGCCTGCCTGTGATG
TTTTTTATGATGAATGAGAACGCGCCAAACGTCGCTGACCGTGACTACTG
GACCCCTCCTTCCTCCCCCTCCCCCTCTCTCGCCCGCTGCTTGCTACCTA
CGCACTTTTTTGTTTTGTTTCCCTCCCGTTATTGGTTCATTCGTCGTCTG
CCCCGCTGGACCCGTCCTCCATGCACGTGTGTGACGAACACCCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTTGTGCCCTGTGAAATCACTGCGAACG
AGCAGTTCACTTTCGGGTTCTCCGTGCTGCCGACCCCGGCCCAGATGCGG
GCCTCCCTTGCAGACCAACTGGGCGTGGAAGATCTCCGGCTCAGGTTCCG
GCAGCACGCGGAGGGGAGGGTGGCGCCCGAGTTGCCGGATTTTTACAAGG
TATCTACGTACGCTTGGAACGACATTGCGTTTCTGTTTACATGGTGGATA
GCAGTAGGGCCTGGCCTGAGTTGTGCATGCAAACATTTGGCGTAAAATTG
CCTTTTTCGAGTATTTGTGTAAGAAAAGGCCTAATTATGTCCTGTGCACG
AAACTTGAGCATGCATATTTCATGCACAAATTCTCTTGTTGGGGGGCACA
CACATGAGCGTGAGTGACTATACTCAATTTTTTACGTTCATAAGTAAAAT
AAGCACATTTTTTGAAAGAAAACGTGCATAATAGATCAGGCCTACACACA
TTTATACCATACATATATTACGGGCGGGGGGGGGGTTACCAGTTGCCGGG
TGTTTACAAAGTGCGTATTTGTCCACCATTTGCGGCCAGATAATTTGTGG
GCGGACTCGTACTGTATCGTGCTACAAGTTCGGCGTATGGCTCTCGAATC
GCCGAACTTGTACCCACAAAGGTAAATTATACACGTACAATCTATGTACC
GTGCCGTCGATGGGGGTTAAAATCGGTGGATACGGAACCATAAAGGGCAC
AACCAAAAAATATTTACCTGGTAAATTAGAGTTCGATTTTCTTCAAGGTC
AACATCGGAAAAAAACACCACATGTATATGTGCATACCGCCGCTACTGCT
GTCTGTTTGGGCATGTCGAGTGCGTTTATTGGAATTAGTTACAAAAAAAA
CACGGGGTGAAAGAGACAAAATACAGCTCTTGTTCTTTGATTTTTATCGC
TTTGCCGACCCTTCGGGACACCATTTTATTTTCGTACGCCTTTCTTGGGT
TTTAAGTTAGCCTGTGACCACGGGAATTTGACCGCATCAGTTGTTGGAAT
AGCACGTACGTAGGGAGGTTCTGGGCGGAGAGATCGGAACGGTTTTAAAT
GTGAAGAAACAGCAGCAACAACAACAGCTTGCGTGCGTGTCTACGCCATC
ACTTCTGTTGAATATGCCAATACATAAAGGGATGCTTCTTTTCGCTTTTT
CTGTTACTTTTTTTTTTTTTTTTCCAAATGCATGCCTGTACAGCAGTATG
TACCTGTGTATTTATACAGAAAAATACCGCTGATTTTATCCGGACGAGAA
TCCGAATTTTGCTGTGGTCATGCCTTAAGCCATGGCTATTAATTGTAACC
CGCGCTCCAACTACATGCATACGTACATACACATACGATACATGCGTGTC
CTGGAGAGGTGTTACAAGATGTATCACCAGTCTGGTACTTGGTCAAGCTT
TCACCCTCATGGCGGCTTAATGGTCTACCGTAGGTGACACAAGATACCCC
CCCCCCCCCCCCCCTGGACCGAATTTTAGAGCTCCATTACTCCGCAACGA
AGAGGGTGCCTGGCCAGCACCAAACGACACTTTTTCGGACAGCCCTCGAC
TAGATCTTTCCAACCCCACTACCTTTCGGCACTGGCATGGGGAGGAATAC
ACTTCCTGCAGCAAGCGCTCTCCATTCTGAAAAAGTGACAGCTGCGGGGG
AGATTTCTCACTCTTCATATTTCCTAGACAAATACCCCCCGGCGCTCTGC
CCCCACAGCTCTTCTTGAGAATTGAGGGCTCTTTTGCGGGAAGTCTATCG
AGCTTTGAAAATCTGTCTTGGGGAGGGGGGGGGGGGAGGTGGTATCTTGT
GTCACCTATGGTAATGAATCCCTCTTACACTGGTGTTTTCCTTCCCGTGG
CCGCATCGCGTCGCATCGCGTCGCATCGCATCGCATCGCATCACATCGCA
TCACATCGGATCTCATCGCATCGCATCACCTCACATGCATCGCATCGCAT
CGCATCGCATCGGAAGGCCTGCATGGACCGGGAGCAGGTGGAGGGCTACT
TCGAGCGGCAGGCTGCGACGATGGCGATCATCGATCGCTTCGTCGCGGAG
GGCTCGGAGCAGGAGATCAACGTCTCTGGGGAGTGCAGGGCGCGGGTGCT
GGAGTCTTGTGTCACCAGGTTCGGATGGGTTGGATTGTCTGGGTGGGCGG
CGTTTTCGTTTGTATTACCCCGAACCCCGATCCGGCTATTGTGTAGGTAG
TAGTCTTACGTCTGGTTGTACGGAAAAAAACGTCTGCCAAAACGTGCAGA
GTGCGCCGAAAGATGATCTTCGCCAGATTGAAGATCTAAGTATATGTATA
TCTATATAGGGTTAAGGGGTAGGGTTAGGGTTATATCTATACCGCGTGAC
CGGCAGAAACCAGGAGAGAGTGCTCTCTTTTGTGTGTGAAGGATCTGCCT
GCGCATCGGCTCGTTTTTCGCCTCTACATATATGTACGTGGCCCTTGAAC
GAGCTCCGCCTTCGCTCTCTCTTGTTCAGGTACAACATCTTCGACGAGGC
CATCGCGGAGGTCCTCCACCTGATGGAGCTTAACCTCAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8512:4123..8162-

>mRNA_L-elsbetiae_contig8512.17539.1 ID=mRNA_L-elsbetiae_contig8512.17539.1|Name=mRNA_L-elsbetiae_contig8512.17539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig8512:4123..8162- (Laminarionema elsbetiae ELsaHSoW15)
ACCACGGTGGTGCTGTTCTGGGTTCCCATCTTCGTGCCCCTCCTCAAGTA
CCTGCAGCACGACCGCGAGTACGTGTGGCAGACCACGGTGGTGCTGTTCT
GGGTTCCCATCTTCGTGCCCCTCCTCAAGTACCTGCAGCACGACCGCGAG
TACGTGTGGCAGCAGTTCACTTTCGGGTTCTCCGTGCTGCCGACCCCGGC
CCAGATGCGGGCCTCCCTTGCAGACCAACTGGGCGTGGAAGATCTCCGGC
TCAGGTTCCGGCAGCACGCGGAGGGGAGGGTGGCGCCCGAGTTGCCGGAT
TTTTACAAGCAGTTCACTTTCGGGTTCTCCGTGCTGCCGACCCCGGCCCA
GATGCGGGCCTCCCTTGCAGACCAACTGGGCGTGGAAGATCTCCGGCTCA
GGTTCCGGCAGCACGCGGAGGGGAGGGTGGCGCCCGAGTTGCCGGATTTT
TACAAGGCCTGCATGGACCGGGAGCAGGTGGAGGGCTACTTCGAGCGGCA
GGCTGCGACGATGGCGATCATCGATCGCTTCGTCGCGGAGGGCTCGGAGC
AGGAGATCAACGTCTCTGGGGAGTGCAGGGCGCGGGTGCTGGAGTCTTGT
GTCACCAGGCCTGCATGGACCGGGAGCAGGTGGAGGGCTACTTCGAGCGG
CAGGCTGCGACGATGGCGATCATCGATCGCTTCGTCGCGGAGGGCTCGGA
GCAGGAGATCAACGTCTCTGGGGAGTGCAGGGCGCGGGTGCTGGAGTCTT
GTGTCACCAGGTACAACATCTTCGACGAGGCCATCGCGGAGGTCCTCCAC
CTGATGGAGCTTAACCTCAAGGTACAACATCTTCGACGAGGCCATCGCGG
AGGTCCTCCACCTGATGGAGCTTAACCTCAAG
back to top