mRNA_L-elsbetiae_contig8505.17535.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8505.17535.1
Unique NamemRNA_L-elsbetiae_contig8505.17535.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8505.17535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8505contigL-elsbetiae_contig8505:3045..3375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8505.17535.1prot_L-elsbetiae_contig8505.17535.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8505 3045..3366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816933.6073585-CDS-L-elsbetiae_contig8505:3044..31271622816933.6073585-CDS-L-elsbetiae_contig8505:3044..3127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8505 3045..3127 -
1691683923.2204108-CDS-L-elsbetiae_contig8505:3044..31271691683923.2204108-CDS-L-elsbetiae_contig8505:3044..3127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8505 3045..3127 -
1622816933.6171043-CDS-L-elsbetiae_contig8505:3293..33661622816933.6171043-CDS-L-elsbetiae_contig8505:3293..3366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8505 3294..3366 -
1691683923.2308388-CDS-L-elsbetiae_contig8505:3293..33661691683923.2308388-CDS-L-elsbetiae_contig8505:3293..3366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8505 3294..3366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816933.6270893-UTR-L-elsbetiae_contig8505:3366..33751622816933.6270893-UTR-L-elsbetiae_contig8505:3366..3375Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8505 3367..3375 -
1691683923.240697-UTR-L-elsbetiae_contig8505:3366..33751691683923.240697-UTR-L-elsbetiae_contig8505:3366..3375Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8505 3367..3375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8505.17535.1

>prot_L-elsbetiae_contig8505.17535.1 ID=prot_L-elsbetiae_contig8505.17535.1|Name=mRNA_L-elsbetiae_contig8505.17535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
MKLIGALVTGRLCHFFTIGSNWESGSNLTIQVLHGTLVELMKTSEATGTP
LP
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mRNA from alignment at L-elsbetiae_contig8505:3045..3375-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8505.17535.1 ID=mRNA_L-elsbetiae_contig8505.17535.1|Name=mRNA_L-elsbetiae_contig8505.17535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=331bp|location=Sequence derived from alignment at L-elsbetiae_contig8505:3045..3375- (Laminarionema elsbetiae ELsaHSoW15)
AAGCTTCGAATGAAACTCATCGGCGCTCTCGTCACCGGTCGTCTTTGTCA
CTTCTTCACTATCGGCAGCAACTGGGAGAGTGGTACGTGCATGTACGCAG
AGGTTAGTGGAATGTGTGTGGGTGTAACGAGAGGAACTATTTCGCAAATA
ATACAGAACACACGAAGCTGGTCACTCTTTTGTCAGGCAAGTGCAACATA
GCTAATATCTATTTCCTTCCTCATCCTGCACGCTTGCACTGTGTCAAGGT
TCCAACTTGACTATACAGGTACTACACGGTACGCTCGTTGAACTCATGAA
GACCAGCGAGGCCACTGGAACGCCACTTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8505:3045..3375-

>mRNA_L-elsbetiae_contig8505.17535.1 ID=mRNA_L-elsbetiae_contig8505.17535.1|Name=mRNA_L-elsbetiae_contig8505.17535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig8505:3045..3375- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACTCATCGGCGCTCTCGTCACCGGTCGTCTTTGTCACTTCTTCAC
TATCGGCAGCAACTGGGAGAGTGATGAAACTCATCGGCGCTCTCGTCACC
GGTCGTCTTTGTCACTTCTTCACTATCGGCAGCAACTGGGAGAGTGGTTC
CAACTTGACTATACAGGTACTACACGGTACGCTCGTTGAACTCATGAAGA
CCAGCGAGGCCACTGGAACGCCACTTCCCGTTCCAACTTGACTATACAGG
TACTACACGGTACGCTCGTTGAACTCATGAAGACCAGCGAGGCCACTGGA
ACGCCACTTCCC
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