mRNA_L-elsbetiae_contig85.17524.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig85.17524.1
Unique NamemRNA_L-elsbetiae_contig85.17524.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: A0A6H5KSL6_9PHAE (V-SNARE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL6_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 6.520e-121
Identity = 199/244 (81.56%), Postives = 211/244 (86.48%), Query Frame = 1 
Query:    1 MEPFGFEPGPSRAMITFKQHEDGYHRCSVSINRAINGIQLNTLVEAVGATSLPSFLQEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLAR---SRLSLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASKARRLLRSISRRELRHRLCLYFVIAVLSASIAGVLYFKIRRR 723
            MEPFGFE GPSRA+ TF+ HE+ YHRCS+SINRAINGIQLN LV+AVGATSLP  LQEA QHVKGMEIE RSMKG+ERRQCQSRANQCRADLKALR++IDQAGQRAQAEELMRR GG  IGG  R FSE GG    L GLGPDLAQQSLAR   SRLSL DSRRVLEETEGIGRGVMGDLESQRESLLRSRA+VRDT  AA +ARRLL SISRRELRHRLCLY VIA+LSA+I  VLY KIRRR
Sbjct:    1 MEPFGFESGPSRAVQTFQSHEESYHRCSMSINRAINGIQLNNLVDAVGATSLPLDLQEAEQHVKGMEIEARSMKGNERRQCQSRANQCRADLKALRRSIDQAGQRAQAEELMRRSGGGAIGGEPRSFSEGGGD---LRGLGPDLAQQSLARRVLSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYAVIALLSAAIVFVLYLKIRRR 241
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: A0A835ZAL4_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.170e-33
Identity = 101/263 (38.40%), Postives = 137/263 (52.09%), Query Frame = 1 
Query:    1 MEPFGFEPGPSRA----MITFKQHEDGYHRCSVSINRAINGIQL-------------------NTLVEAVGATSLPSFLQEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLARSRLSLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASKARRLLRSISRRELRHRLCLYFVIAVLSASIAGVLYFKIRR 720
            M+P   E  P R+    M  F  +ED Y + +  IN  I+ +                       +V+A  AT L    +E+    +GMEIEVRSM G +R++C ++A Q R+DL ALR+  DQA  RA                 AR+    GGG             ++LAR+ +SL DSRRVL ETE +G  V+ DLE QR+SLLR+R N R+      +AR +LR+I+RR+ RHRL LY +IA L  +IA VLY K RR
Sbjct:    1 MQPLDVEAPPPRSSTSTMTIFNSYEDSYLQAARGINAHISALWSLRAAANXXXXXXXXXXXXPERIVDA--ATRL---FEESESLARGMEIEVRSMTGADRKKCGAKAAQYRSDLLALRRAFDQARARA-----------------ARELGYDGGG-------------RALARTAISLTDSRRVLAETEDVGARVVTDLEGQRQSLLRARDNAREISYDTVEAREVLRAIARRDARHRLALYAIIAALLCAIAFVLYLKFRR 228
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: W7U7D0_9STRA (Qb-vti1-family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7D0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.120e-17
Identity = 70/237 (29.54%), Postives = 116/237 (48.95%), Query Frame = 1 
Query:   61 EDGYHRCSVSINRAINGIQLNTL-----VEAVGATSLPSFL-----------QEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLARSRLSLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASKARRLLRSISRRELRHRLCLYFVIAVLSASIAGVLYFKIRRR 723
            ++ Y+R S +INR +N +    L     +     T  PS L            EA   VKG+EIEV+ M   ++R C+ +  Q R DLKA+R++ + A  RA+   L++    S + G  ++ +E                   L  S   L D+R+V++ETE IG G++  +E+QRE L+R+   V++T      AR+++ ++  R +RH+ CL  +I  L   I  V  + +  R
Sbjct:    2 QEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQL---SQVSGKRKNIAE------------------RLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLAR 217
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: A0A7S1C7L7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7L7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.300e-13
Identity = 59/185 (31.89%), Postives = 97/185 (52.43%), Query Frame = 1 
Query:  145 ATSLPSFLQEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLARSRLSLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASKARRLLRSISRRELRHRLCLYFVIAVLSASIAGV 699
            A      +++A   V+ ME+E RS+   E+R+   R    RA+L A R ++++A  R   + LM  G    +   +R+ +   G          + A   + RS   L ++RR + ETE +G G+MG+L SQRE+LLR+   V++T    ++ARR+L +I RR   ++  L+ VI  L  +I  V
Sbjct:   46 AAQAKRLVRDAEGTVQAMELEARSVAPSEKRRLTGRIRTYRAELSAARTDLERAQTRGDRDALMAGGSRDAV---SRESASQRGRI--------EEATARMDRSTAVLEETRRTVMETEEVGVGIMGNLHSQRETLLRAHDKVKETNRLTTRARRVLNNIKRRACYNQALLWVVILFLLGAIGAV 219
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: A0A7S0WIR7_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WIR7_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 5.990e-12
Identity = 64/234 (27.35%), Postives = 120/234 (51.28%), Query Frame = 1 
Query:   37 AMITFKQHEDGYHRCSVSINRAINGIQ-LNTLVEAVGATSLPSFLQEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQA------GQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLARSRLSLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASKARRLLRSISRRELRHRLCLYFVIAVLSASIAGVLYFKIR 717
            A   F+Q+E  Y   S   +R I  ++ LN        + +   L++A   +K M++EVRS+  D+ +  Q++  + +ADL +L+  + +A      G  A+AE L   G  ++   G RD                  A Q L ++   L   ++ L +TE +G  ++ DL SQRE+++ S   +R  +   +KAR++L +++RR +++++ +  VI  L A+IA +++ K+R
Sbjct:   12 ASALFRQYEQDYCTKSTDTSRKIGLLEALNGDARRKKLSEIEGDLRQAEDVLKRMDLEVRSLPADQSKPLQAKVKEYKADLASLKTQVQKAAASMPAGDAARAE-LGLGGDYASSSAGQRDRMLT--------------ATQRLEKTNDVLDYGKQTLMQTEELGASILKDLHSQRETIVHSSNTLRGADDNITKARKILSNMARRLMQNKIIMAGVILFLVAAIALIIWAKVR 230
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: A0A4D9CYM8_9STRA (V-SNARE domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYM8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.750e-11
Identity = 60/197 (30.46%), Postives = 94/197 (47.72%), Query Frame = 1 
Query:   37 AMITFKQHEDGYHRCSVSINRAINGIQ------------------LNTLVEAVGATSLPSFLQEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLARSRLSLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANV 573
            AM T  Q ++ Y+R S +INR +N +                   L+ L+  V    L   L EA   VKG+EIEV+ M    +  C+ +  Q R DLKA+R++ + A  RA+   L++    S + G  ++ +E                   L  S   L D+R+V++ETE IG G++  +E+QRE L+R+   V
Sbjct:   21 AMDTSGQMQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPLSRLLRLVAEIDLD--LAEAEGQVKGLEIEVQDMPVKNKSMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQL---SQVSGKRKNIAE------------------RLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQV 194
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: A0A383VR47_TETOB (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VR47_TETOB)

HSP 1 Score: 71.6 bits (174), Expect = 1.960e-11
Identity = 59/224 (26.34%), Postives = 119/224 (53.12%), Query Frame = 1 
Query:   49 FKQHEDGYHRCSVSINRAINGI-QLNTLVEAVGATSLPSFLQEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLARSRLSLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASKARRLLRSISRRELRHRLCLYFVIAVLSASIAGVLYFKIR 717
            F+Q+E  Y   S  I+R I  I  L   +     + + + ++EA+  VK M++E RS+  D+ R   ++  + +ADL +LR+ + QA     +E+   R   + +G G   +S   G    +       A + + ++   L   ++ L ETE +G  ++ DL  QRE++  +R  +   +   SKAR++L ++S+R +++++ ++ ++A L A+I  ++Y K++
Sbjct:    8 FRQYETDYCNKSTDISRKITSIASLTGELRRKKVSEIEADVREADNVVKRMDMEARSLAPDKGRPLLNKVREYKADLASLREQLKQAAAGGGSEDAAAR---AELGLGDNYYSTSAGQRDRM-----LAATERMQKTSDRLQVGKQQLAETEELGVTILQDLARQRETITHARDTLHGADDNISKARKVLGTMSKRIVQNKIIMFGIVAFLLAAIFLIIYVKLK 223
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: A0A835WA92_CHLIN (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WA92_CHLIN)

HSP 1 Score: 69.7 bits (169), Expect = 3.500e-11
Identity = 56/185 (30.27%), Postives = 98/185 (52.97%), Query Frame = 1 
Query:  196 MEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLAR--------SRLSLLDSR-----RVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASKARRLLRSISRRELRHRLCLYFVIAVLSASIAGVLYFK 711
            M+ E RS+  D ++Q Q++  + RADL +L++ + +A       E  R              +E+G        LG D A  S A+        ++L   D R     ++L ETE +G G++ +L SQRE+++RSR  +   +   +KAR++L S+S+R L+++L ++ +I  L A+I  ++YFK
Sbjct:    1 MDNEARSVAPDRQKQLQNKVKEYRADLASLKEQLQKARSSTSDFESGR--------------AELG--------LGMDYASSSSAQRDRMLSATAKLEQSDERLKQGKQLLAETEDLGAGILQNLHSQRETIVRSRDTLHGADDNITKARKILSSMSKRMLQNKLIMFGIIGTLLAAIILIIYFK 163
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: UPI001884A58A (vesicle transport through interaction with t-SNAREs homolog 1A-like isoform X1 n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884A58A)

HSP 1 Score: 70.9 bits (172), Expect = 3.680e-11
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 1 
Query:   49 FKQHEDGYHRCSVSINRAINGIQLNTLV-EAVGATSLPS--FLQEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLARSRLSLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASKARRLLRSISRRELRHRLCLYFVIAVLSASIAGVLY 705
            F +HE  Y   S  I   IN IQ +++  +AV      +   + EA++ ++ ME+E R    + R+   +R     A+L+ L K       R    E++         GGAR  +           L  D         RL   +  R+  E+E IG  V+GDL SQRE+LLR+R+ +RDT+    ++ RLL  +  R +++R+ L  V AVL A++   +Y
Sbjct:   11 FTEHEHLYSVLSAEITDKINIIQGHSITGDAVAGPCAEAERLMAEAHELMEQMELEAREQPDELRQALANRVRSYSAELRRLNKEYQNIKHRVCRAEVLE--------GGARSATAAER-------LMDDTELMERTGGRLD--EGYRMCLESEAIGAEVLGDLSSQRETLLRTRSRLRDTDSELGRSSRLLTGMMHRAMQNRVLLLLVAAVLLAAVGYAVY 215
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BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Match: A0A0G4EKS9_VITBC (V-SNARE domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EKS9_VITBC)

HSP 1 Score: 67.8 bits (164), Expect = 5.100e-10
Identity = 64/230 (27.83%), Postives = 112/230 (48.70%), Query Frame = 1 
Query:   49 FKQHEDGYHRCSVSIN---RAINGIQLNTLVEAVGATSLPSFLQEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNIDQAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSL-ARSRL-----SLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASKARRLLRSISRRELRHRLCLYFVIAVLSASIAGVLYFK 711
            F  +++ + R  V +    + +N  + +T            F+Q+A Q+++ ME+E R++               R +L  L +    A    + + L+ + GG    GGA + +       GLG    +  Q+ L AR+ L      L +SRR+  ETE IG  ++GDL SQRE++LR+R N+ D       ARR + ++ RR + +++ LY +I V   +I  ++Y+K
Sbjct:    5 FSTYQEDFDRLIVEVEGKLKILNNYEDSTSDLRQAIADCQKFIQQAEQNLRQMEMECRTLPASTAPHIAESMASRRTNLTELSQEFQNARTDLERKALLGQRGGR---GGAFEMN-------GLGSGSHEHRQRLLDARNGLRQGVDQLEESRRLALETEQIGGEILGDLRSQRETILRTRHNLSDVSYNLDWARRTIANMGRRVVANKILLYSIIGVCVLAIIFIIYWK 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig85.17524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL6_9PHAE6.520e-12181.56V-SNARE domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZAL4_9STRA6.170e-3338.40Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
W7U7D0_9STRA2.120e-1729.54Qb-vti1-family n=1 Tax=Nannochloropsis gaditana Ta... [more]
A0A7S1C7L7_9STRA1.300e-1331.89Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0WIR7_9CHLO5.990e-1227.35Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A4D9CYM8_9STRA1.750e-1130.46V-SNARE domain-containing protein n=1 Tax=Nannochl... [more]
A0A383VR47_TETOB1.960e-1126.34t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835WA92_CHLIN3.500e-1130.27t-SNARE coiled-coil homology domain-containing pro... [more]
UPI001884A58A3.680e-1129.73vesicle transport through interaction with t-SNARE... [more]
A0A0G4EKS9_VITBC5.100e-1027.83V-SNARE domain-containing protein n=2 Tax=Vitrella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig85contigL-elsbetiae_contig85:15995..21087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.2
Seed ortholog evalue2.5e-98
Seed eggNOG ortholog2880.D8LHK7
Preferred nameVTI1A
KEGG koko:K08493,ko:K08494,ko:K10406,ko:K18749
KEGG Pathwayko04130,ko04138,map04130,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0002576,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007034,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008200,GO:0008283,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016247,GO:0016248,GO:0016482,GO:0017081,GO:0019869,GO:0022406,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030173,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031091,GO:0031093,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031901,GO:0031902,GO:0031974,GO:0031982,GO:0031983,GO:0031984,GO:0032010,GO:0032501,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0034613,GO:0034774,GO:0036477,GO:0042144,GO:0042147,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043679,GO:0044237,GO:0044248,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045324,GO:0045335,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0048471,GO:0050789,GO:0050879,GO:0050881,GO:0050882,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0055037,GO:0055038,GO:0060205,GO:0060341,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090161,GO:0090174,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0099106,GO:0099503,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1903076,GO:1903827,GO:1904375,GO:1905475
EggNOG free text desc.vesicle fusion with Golgi apparatus
EggNOG OGsKOG1666@1,KOG1666@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04131,ko04812
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-10_002250.1
Exons4
Model size732
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig85.17524.1prot_L-elsbetiae_contig85.17524.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig85 15995..21087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816932.2684658-CDS-L-elsbetiae_contig85:15994..162741622816932.2684658-CDS-L-elsbetiae_contig85:15994..16274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig85 15995..16274 -
1691683922.156784-CDS-L-elsbetiae_contig85:15994..162741691683922.156784-CDS-L-elsbetiae_contig85:15994..16274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig85 15995..16274 -
1622816932.279408-CDS-L-elsbetiae_contig85:18722..188711622816932.279408-CDS-L-elsbetiae_contig85:18722..18871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig85 18723..18871 -
1691683922.170861-CDS-L-elsbetiae_contig85:18722..188711691683922.170861-CDS-L-elsbetiae_contig85:18722..18871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig85 18723..18871 -
1622816932.2929664-CDS-L-elsbetiae_contig85:20014..201311622816932.2929664-CDS-L-elsbetiae_contig85:20014..20131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig85 20015..20131 -
1691683922.1812422-CDS-L-elsbetiae_contig85:20014..201311691683922.1812422-CDS-L-elsbetiae_contig85:20014..20131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig85 20015..20131 -
1622816932.3048532-CDS-L-elsbetiae_contig85:20901..210871622816932.3048532-CDS-L-elsbetiae_contig85:20901..21087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig85 20902..21087 -
1691683922.193303-CDS-L-elsbetiae_contig85:20901..210871691683922.193303-CDS-L-elsbetiae_contig85:20901..21087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig85 20902..21087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig85.17524.1

>prot_L-elsbetiae_contig85.17524.1 ID=prot_L-elsbetiae_contig85.17524.1|Name=mRNA_L-elsbetiae_contig85.17524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MEPFGFEPGPSRAMITFKQHEDGYHRCSVSINRAINGIQLNTLVEAVGAT
SLPSFLQEANQHVKGMEIEVRSMKGDERRQCQSRANQCRADLKALRKNID
QAGQRAQAEELMRRGGGSTIGGGARDFSEVGGGPGGLGGLGPDLAQQSLA
RSRLSLLDSRRVLEETEGIGRGVMGDLESQRESLLRSRANVRDTEGAASK
ARRLLRSISRRELRHRLCLYFVIAVLSASIAGVLYFKIRRRLS*
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mRNA from alignment at L-elsbetiae_contig85:15995..21087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig85.17524.1 ID=mRNA_L-elsbetiae_contig85.17524.1|Name=mRNA_L-elsbetiae_contig85.17524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5093bp|location=Sequence derived from alignment at L-elsbetiae_contig85:15995..21087- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCCTTTCGGGTTTGAGCCTGGGCCGAGCCGGGCGATGATAACGTT
CAAGCAGCACGAGGATGGCTATCATCGGTGCTCCGTATCGATCAACCGGG
CGATAAATGGGATTCAGCTCAACACCCTCGTCGAGGCCGTAGGCGCGACA
TCCCTCCCGAGTTTCCTGCAGGAGGCAAATCAACACGTAAGTGTGGTACA
TGATCGTTGGGAAGTCGGTTTGGGTCATGTGGTAAGGTGAAGTTGGTGGA
TAAGTTCATAATTCAACCTTCAAAACCTTCAAATCCCCTCCCTCTTCTTT
CCTCATCTCCGACTGCTGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCCCTGCATGACACTCAGAATACGTAGCGCACATCCTCT
TGTTTCCTCAGGAGGAAATATAAAATAAACTGGGTGCTCTTGGTGCATGA
ACACTGCAACACCTTTCCCAATAGGCTCTCTGCATTTTCTCCGCGCTCCG
CCCCCCCCGCTCTCTCACCAACACACATTTAACCACCACCATCCTGGCCT
CAGACTTGCGACTCCAGTAGTAGATTTGTTCCACGAAGTTGATAATACTG
CTTGGCTGCGGCTGCTGCCGCTGCTGCCGCTGCTGCCGCTGCCGCTGCTG
CTGCTGCTGCTACCTTGCGTACTCGAGTAATGGTCTCAACCTAGAAGGGT
TTTCACCTCCCTTCACTTCACCTCATCGCCCGAGATCAAGCTCCAAGACC
TTGCGCGAAACCCGGTTTAGCCTGCAGCACCGTATCTGGCAATAAAACTT
GATTACAGTGGCCCGTAGTGAACTTGTCTGTTCAAGTCAACTTCACCACA
TCATACGCATCCATCATCCGCTCGCACATGTGTATGCATTTATGTGTGTA
TGTGTGTACCTCTACTAACTGCTGTACATTCGTGATCGTACATACCATCT
CAACAGGTGAAGGGGATGGAGATCGAAGTCCGTTCCATGAAGGGGGACGA
GCGGCGCCAGTGCCAGAGTCGGGCAAACCAGTGCAGGGCCGACTTGAAAG
CCCTGCGCAAGAACATAGATCAGGTTCGTGTTTTATTGTGTGTGTGTGTG
TTTTAACCATGTGTTTGTTCGCGCGCGCATCCGCGCGCCCCCCGACAACA
CACCAAATGTCCGAAGGAGTGGGTGGAAATACCCCGCATGCTTGGTAGCG
GGATCATTTCAACGCCATGCGGTGTCAACGCCCCGTGTGAGCGGAGCAGT
CTAACCCGCTTGAACGTCCGCCGTCTCGATGTTGAGTTCCTCTCGTGAGC
ATTGAGATGCAAGCTGTCTTCCTCATGGGCGACCCATGTGTGCATGTACT
GCGCCATCTAGACGCCTTACACCTCAATGCCCCGGGAGGGCAACTCCAAA
TCGCGCGCGAGTGGTTGAGGCCCTGCTGCTTATCTGTAGCTCTCCTGCCG
CACATAAAAGGTGGGACCGATCCGATATGCCCGTGTTCAAAACGTCGGCC
GACATTATCGACCACACCCCCAAACAATACGTCGTGGTATGTTGCTCTCC
GTACATAGCACACATGATTGTTGTTTCTTCACGTTAAAAACCGTTCCAAT
CTCTCCACCCAGTACCCTCCCTATGTCCGTACTATTCCAACACTTGATGC
GGCCATTTCCCGTGGTCACAGGCTAACTTAATATACCTAAAACAAAGTAT
GCGAATATAAAATGGGCCCGAAGGGTCAGCAACGCGATAAAAATCAAAGA
CAAATAGTGTGGAGCCCCCCCCCCGCTCCCCTCTACACGCTACGCAAGGT
AAAAGTAAAACTGGACAAGCCGACATCACCAACCAGGAGTGTACAACCCC
TCTGGTTCTATCTTGGTTGCTGCTTTAAAAAAATAAACAATGAATCAAAG
ATGGAACCTACCCCACACTAGAGCAAGGGCTCGATATGGGGTCCAAACGG
TATTCCATACAGTGACGTAATATTTGGCGAAGCGAGCAGAAAAACAAACC
TGAAATATCAAAAGAGTTCAACATCACCCCTGCAAAGATTTGCGAGGCTG
CTTTTATTTGGGTGATGGTGCTGGCGTTTTTAATCAATGTAAATGTTCTT
ACTAAAAAACGTTCCAACCTGCGAAAACGTCGTGTTCCAGGGGGGACTCT
TACAGACGTTTTTTGTCGAATGTTTTGTGACGATCATGGTTTTGCATCAT
TTTGTTTTTTTGACAGGCTGGGCAACGAGCCCAGGCAGAGGAGCTAATGC
GCCGGGGCGGGGGAAGCACAATAGGAGGGGGGGCGAGGGATTTTTCGGAG
GTTGGTGGCGGGCCTGGCGGGCTGGGCGGGCTGGGCCCGGACCTCGCTCA
GCAGAGCCTCGCAAGGTGATTCTTGTTTCTTAATAAAATGTTTGATGTTT
GTGGTATTTGTTTCAAGGGACAAAGGTCAAAATGCCGCCAGTGTTTGCCC
CCCATTTTTTTTCGATGTCGTCGGCATATTGTACACGGGAACTACAGCAG
TAGAGTAGATCGACGTTCTCTTCGTCAGCGAAACGAATAGCAACTACAAG
CTGGTTAAGATTGAACGCCCAAAATTCATTCCCCGACTAATAACGAACGC
AATACAAGCTCAATTTAGATGAAATCCGTATCGTAGTGTTGTCTACGAGC
GACTCAACAAGGTGACATGTTCCTTCTTCGAATTCTGGGCTTGGGTGCGA
AGCTTTAGGCGGAAATGTAGTCTCGGCCAATCAGCGGCCTCCAAACTGTC
TAGTACTAAAAATACGAGTTTTCAACCCAATATGTCGTTCAATCTCCATA
CTTTTTGTATCATGGCGATTGCGATCCTCTAGGGAACCTAGCAAAAAAAA
CTGTTTTGAAAACGGTTGTCCTGGCATCGAGTTATACCGAAAAATATTAT
ATTTCGGTGACGACGACGCCAATTTTTCCTAATGATATAGAAGTAGGACT
AAGACCGTAGAGCCGGCGCCAACGGTTTCTTGCATATCTCCCCGAAAAAA
GATTCAATCAATCTCAAACTTTACATCGCGATGGATATTGACGCTGCAAA
TATGAGAAAAAAATCCGGGGTGTTCCGGTAAGTGGTGGGTCTGTACTGGC
TTTCGGGGGTCCCGCCGGCGTCAGAACCCCCAATAGCCAGTGCAAAACTC
TCTGCGCAAAACTAAAACTTCCACGCTCTCCGCCGTCCCCCAAGGAACAT
TCGCCGGCGGGACCCCCGAAAGCCAGTGCAAAACTCTCTGCGCAAAACTA
AAACTTCCACGCTCTCCGCCGTCCCCCAAGGAACATTCGTACCAAGTTTG
GTTGGATAACTCAAAAGACTGACCCCGCAGGCCCCGCAGGGTCGTTTGCC
GTGAAAAAAACGTGAAAAATGTCCAAAGTATACTTTAATCAAGTAATTAG
GGGGGTACGCAGACTTTTTTACACTTCCGAGCACGTTTTGGCGTTTTCTC
ACGCCGTTTTCACGAGTTAGGCCTTGGAATTTTGCACACATGTACTACGG
GTGATGGTAAAAAGACGGATCAGGGGGCTTTTTTTATTTTTTACTTTGCT
GCCTTTTTATCCATGGTCGCAATCGACCTATTTGACCGGGGGAGGGGGGG
TAACCCGGGTATCTCGACAACAAAACCCCTTCCTGGAGAGTTTGATAATG
CCTTACTGATCATGTGTGCAAATTTTCATGGTCTAACTCGAAAAAACGGC
GTGAGAAAACGCCGGGGAATAATTTTTGGGCATTCAATCTGAACCAGCTT
GTACCGTCATCCTTCTTATTTTCATTTTTTTCAACTACTGTTAAGCTACT
TGCTCTCCCCGCCAATGTTGAGCTTGGTCGGCTTCGTTCTCGCGTGTCAA
GATTTTTGGTGTCTTTAAAAATAAACAATGCATCAAAGATCAAAGATGGA
ACCTAACCCACACTAGAGCAAGGACTGGATATGGGACTCGAACGATATTC
CATACAGTGTGACGTAGTATTTGGCGAAGCGAGCAGAAAAACAAACCTAA
AATATCAGAAGAGTTTAACATCTCCCCTGCAAAGATTCGCGAGGTCGGCC
AACAAATATTCCGGCGGGTAGATGCCCGCCATGATGCCGTAATGTTGTCA
TCTACTTCAAAATAGGGACACATCGCATTGTTGAACTAAATCAAAATGCT
GGTTTAATATATGTGGGTTACTGATTTTAGGAGAACATACTTCAATATTA
GTGGTAGGTGATGAGGCAATAGCCAGGATTGAGAGGGATGGTATCTAGCG
TGTCAGAAAATAATGTGGGTGTGATATCTTCCGTATGTCAACGTGCCAAC
ATGGTCTGGATCCGAACGCTCGTACCCCGAGTGCGCAATGGAAGCTATGT
ACCGTAGAATCCAAGGTCGTAGAAAGCTCGCGGAAAGCCATCTCAACAGA
GCTCAAAACCTTTTGGGCTCATTCTGTTGGCGTGGCCCCAAAAATCAGGA
ACGCCAAGGGTAGCCCGAACTGATTGTAAGTGAACGGTAGATGGCATAGG
GAGACTTGAGGCAAGCAATACCTAGAATAGCCCGTGTATGTGTAGGCGCA
TAACGCGCACACACGTCCGTGTCGAAAGCGTCTGCGTCGGCGGTGGTCGA
GCGACTGCCTGCTGTACCCCCGAACGACAACACACATGCGTGTACACACA
TAGATACAGACATACATACGTCCTGCGTCATCGGTACACATATGTATGCA
GACATCAAGACGACGCCCGCACACTGGACGTGACGTCTTGCGTCGTCGGT
ACGTAAGCATCACAACAAAATTCGTTCATTCGGTGCCCTGCCGCTTCCCA
CGGGTCTGGCCAGGAGCCGCTTGAGTCTTCTCGACTCTCGGCGAGTGCTG
GAAGAGACGGAGGGCATCGGGCGCGGGGTAATGGGCGACCTGGAGTCCCA
GCGCGAGTCCCTGCTGCGATCGCGGGCAAACGTAAGGGACACGGAGGGGG
CGGCGTCCAAGGCGCGGCGGCTGCTGCGGTCCATCTCCCGGAGGGAGCTG
AGGCACCGCCTCTGCCTCTACTTCGTCATCGCCGTGCTGAGCGCTTCCAT
CGCCGGCGTGCTTTACTTCAAGATTCGAAGACGCTTGTCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig85:15995..21087-

>mRNA_L-elsbetiae_contig85.17524.1 ID=mRNA_L-elsbetiae_contig85.17524.1|Name=mRNA_L-elsbetiae_contig85.17524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig85:15995..21087- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCCTTTCGGGTTTGAGCCTGGGCCGAGCCGGGCGATGATAACGTT
CAAGCAGCACGAGGATGGCTATCATCGGTGCTCCGTATCGATCAACCGGG
CGATAAATGGGATTCAGCTCAACACCCTCGTCGAGGCCGTAGGCGCGACA
TCCCTCCCGAGTTTCCTGCAGGAGGCAAATCAACACATGGAGCCTTTCGG
GTTTGAGCCTGGGCCGAGCCGGGCGATGATAACGTTCAAGCAGCACGAGG
ATGGCTATCATCGGTGCTCCGTATCGATCAACCGGGCGATAAATGGGATT
CAGCTCAACACCCTCGTCGAGGCCGTAGGCGCGACATCCCTCCCGAGTTT
CCTGCAGGAGGCAAATCAACACGTGAAGGGGATGGAGATCGAAGTCCGTT
CCATGAAGGGGGACGAGCGGCGCCAGTGCCAGAGTCGGGCAAACCAGTGC
AGGGCCGACTTGAAAGCCCTGCGCAAGAACATAGATCAGGTGAAGGGGAT
GGAGATCGAAGTCCGTTCCATGAAGGGGGACGAGCGGCGCCAGTGCCAGA
GTCGGGCAAACCAGTGCAGGGCCGACTTGAAAGCCCTGCGCAAGAACATA
GATCAGGCTGGGCAACGAGCCCAGGCAGAGGAGCTAATGCGCCGGGGCGG
GGGAAGCACAATAGGAGGGGGGGCGAGGGATTTTTCGGAGGTTGGTGGCG
GGCCTGGCGGGCTGGGCGGGCTGGGCCCGGACCTCGCTCAGCAGAGCCTC
GCAAGGCTGGGCAACGAGCCCAGGCAGAGGAGCTAATGCGCCGGGGCGGG
GGAAGCACAATAGGAGGGGGGGCGAGGGATTTTTCGGAGGTTGGTGGCGG
GCCTGGCGGGCTGGGCGGGCTGGGCCCGGACCTCGCTCAGCAGAGCCTCG
CAAGGAGCCGCTTGAGTCTTCTCGACTCTCGGCGAGTGCTGGAAGAGACG
GAGGGCATCGGGCGCGGGGTAATGGGCGACCTGGAGTCCCAGCGCGAGTC
CCTGCTGCGATCGCGGGCAAACGTAAGGGACACGGAGGGGGCGGCGTCCA
AGGCGCGGCGGCTGCTGCGGTCCATCTCCCGGAGGGAGCTGAGGCACCGC
CTCTGCCTCTACTTCGTCATCGCCGTGCTGAGCGCTTCCATCGCCGGCGT
GCTTTACTTCAAGATTCGAAGACGCTTGTCGTGAGAGCCGCTTGAGTCTT
CTCGACTCTCGGCGAGTGCTGGAAGAGACGGAGGGCATCGGGCGCGGGGT
AATGGGCGACCTGGAGTCCCAGCGCGAGTCCCTGCTGCGATCGCGGGCAA
ACGTAAGGGACACGGAGGGGGCGGCGTCCAAGGCGCGGCGGCTGCTGCGG
TCCATCTCCCGGAGGGAGCTGAGGCACCGCCTCTGCCTCTACTTCGTCAT
CGCCGTGCTGAGCGCTTCCATCGCCGGCGTGCTTTACTTCAAGATTCGAA
GACGCTTGTCGTGA
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