mRNA_L-elsbetiae_contig8496.17515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8496.17515.1
Unique NamemRNA_L-elsbetiae_contig8496.17515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: A0A6H5KNK6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK6_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 1.610e-97
Identity = 143/164 (87.20%), Postives = 158/164 (96.34%), Query Frame = 1
Query:    1 TGNCVGARNYRAFMAFIILVTISASLVCAMSVLHTVTRTGHVGPLHLTDSINLPGSRFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQPSSMLKDMTEFPTGQSVHGGINYTESAYTELQEVIQPQGGDMV 492
            TGNCVGARNYRAFMAFIILVTIS+SLVCAMSV+HTVTRTGHVGP++LTDS+NLPGSR VSPVLGMW AMIT+LVGALLCFH+YLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP+SML DM+EF TG +VHGG++YT +AYTELQEVI+PQGGD+V
Sbjct:  660 TGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSRLVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQPASMLADMSEFSTGHTVHGGVSYTANAYTELQEVIRPQGGDLV 823          
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: D7FZN5_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN5_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 6.450e-76
Identity = 111/123 (90.24%), Postives = 122/123 (99.19%), Query Frame = 1
Query:    1 TGNCVGARNYRAFMAFIILVTISASLVCAMSVLHTVTRTGHVGPLHLTDSINLPGSRFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQPS 369
            TGNCVGARNYR+FMAFIIL+TIS+SLVCAMSV+HTVTRTGHVGP++LTDS+NLPGSRFVSPVLG+W AMIT+LVGALLCFH+YLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP+
Sbjct:  314 TGNCVGARNYRSFMAFIILITISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSRFVSPVLGLWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQPT 436          
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: D8LTN2_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN2_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.290e-43
Identity = 79/146 (54.11%), Postives = 100/146 (68.49%), Query Frame = 1
Query:    1 TGNCVGARNYRAFMAFIILVTISASLVCAMSVLHTVT-RTGHVGPLHLTDSINLPGSRFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQPSSMLKDMTEFPTGQSVHGGINYT 435
            TGNC+GARNYRAFMAFI +VTIS    CA+SVLH V  R  +VGP+ L +   +PGS+F   +L +W A++ +LVG LL FHI+L+AKGQTTNEYLR E   G+   R F  +C ELWCG +P S+L DMTE     +  GG + T
Sbjct:  149 TGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARPPSLLSDMTESVNTDNSAGGTDDT 294          
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: A0A7S3UWP6_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWP6_HETAK)

HSP 1 Score: 131 bits (330), Expect = 6.860e-34
Identity = 67/166 (40.36%), Postives = 93/166 (56.02%), Query Frame = 1
Query:    1 TGNCVGARNYRAFMAFIILVTISASLVCAMSVLHTVTRTGHVGPLHLT----DSINLPGSRFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQPSSMLKDMTEFPTGQSVHGGINYTESAYTELQEVIQPQGGD 486
            TGNC+G RNYR F  F++ +T S++ V  MS  +       +   +      D   + G +F++P+L +W  ++T LVGALL FHI LL +GQTTNEYLRGEK RG++PH +   NC  LWC   P S L  M E P  +     +     A + LQE +Q +  D
Sbjct:   82 TGNCIGRRNYRFFYLFLMSITASSAYVLVMSANYLTRHLTDIDSKYFDAIFKDEWKIKGGQFIAPLLILWTLLVTTLVGALLVFHIILLGRGQTTNEYLRGEKNRGDIPHGNIFTNCGNLWCHDMPESRLLPMWEHPGKEDDDRNLKAAVDAMSSLQEAMQARTED 247          
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: A0A835YZ83_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ83_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.140e-32
Identity = 64/155 (41.29%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 GNCVGARNYRAFMAFIILVTISASLVCAMSVLHTVTRTGHVGPLHLTDSINLPGSRFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKR--RGNVPHRSFGPNCRELWCGTQPSSMLKDMTEFPTGQSVHGGINYTESAYTELQE 462
            GNC+G RNYR+F+ F+I++         +S +H +TR G+VGP  LT    +PGS +VSP LG+WA ++T +VG LL  H+YLL +GQTTNE+L+GE    RG V  +     C  LWC   P S+L    E+PT   V        +    L +
Sbjct:  180 GNCIGHRNYRSFLRFLIVLAXXXXXXXXLSAIHALTRLGNVGPEDLTSQSGVPGSEYVSPFLGVWALLVTAIVGGLLLLHMYLLFQGQTTNEFLKGEPVHVRGRVMRK-----CLLLWCERLPPSLLPPFDEYPTQDDVDANAKRATATLESLSD 329          
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: A0A6H5LMK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMK7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.020e-14
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  163 GSRFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP 366
            GS+FV  +L +W A++ ILVG LLCFH++L+ K QTTN YLR E   G+   R F  +C ELW G +P
Sbjct:   96 GSQFVPHLLALWTAVVMILVGGLLCFHVFLVTKSQTTNLYLRREAPSGSRLGRPFLASCHELWSGARP 163          
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: A0A812WJG5_SYMMI (Palmitoyltransferase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WJG5_SYMMI)

HSP 1 Score: 70.9 bits (172), Expect = 2.360e-11
Identity = 48/162 (29.63%), Postives = 77/162 (47.53%), Query Frame = 1
Query:    1 TGNCVGARNYRAFMAFIILVTISASLVCAMS---VLHTVTRTGHVGPL--HLTDSINLPGSRFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQPSSMLKDMTEFPTGQSVHGGINYTESAYTELQEVIQ 471
            TG C+G RNY  F  FI L T+SA+  C+ S   ++       H   L  ++ D         V+P++  +  ++ +LVG+LL FH++L+ + QTTNE+LRG +   +    S   N  +L   + P S L  M E      +    N    A   ++  I+
Sbjct:  217 TGTCIGVRNYAYFCVFITLATVSAAFACSTSAYLIVQWAEGRNHEPRLLMYIRD--------VVAPLVCAFTLLVFVLVGSLLAFHLFLIGRQQTTNEFLRGVRPSHSDYKNSTTGNVVKLCNTSIPDSKLLPMWEKCQADDIERSSNAVAQAINSMRSAIE 370          
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: F0Y087_AURAN (Palmitoyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y087_AURAN)

HSP 1 Score: 69.3 bits (168), Expect = 6.960e-11
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    4 GNCVGARNYRAFMAFIILVTISASLVCAMSVLHTVTRTGHVGPLHLTDSINLPGSRFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKR 300
            G CVGARNYRAF+ F++     A  VC+ +  + V        +H   +    G   V+ +   W+A++ + V  L+ FH+YL+   QTTNEYLR E+R
Sbjct:  160 GTCVGARNYRAFVLFLVWTLAGALYVCSRAARYLV----RCSTVHACSAYVDFGRPIVAGISVAWSAVVALPVATLIAFHLYLMGHDQTTNEYLRDERR 254          
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: A0A7R9UDC7_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.380e-10
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    4 GNCVGARNYRAFMAFIILVTISASLVCAMSVLHTVTRTGHVGPLHLTDSINLPGS----RFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKRR 303
            GNC+GARNYR F+ FII   ++   V ++S+   ++ TG +    +    + PG+    R ++ VL  W  ++T LVGAL  FH  L+  GQTTNEY++  + R
Sbjct:  249 GNCIGARNYRFFLLFIISTVLACVFVLSVSLYAFLSGTGGL----IVQVQDDPGADTVLRVLALVLVFWTFLLTALVGALTFFHCSLMCMGQTTNEYVKAARAR 348          
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Match: A0A1I7RVI0_BURXY (Palmitoyltransferase n=2 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7RVI0_BURXY)

HSP 1 Score: 67.8 bits (164), Expect = 3.600e-10
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 1
Query:    4 GNCVGARNYRAFMAFIILVTISASLVCAMSVLHTVTRTGHVGPLHLTDSINL-PGSRFVS--PVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLR-------GEKRRGNVPHRSFGPNCRELWCGTQPSSML 378
            GNCVG RNYR F  F++L+TI   LV A S+ H +  +  +   +  ++IN  PGS FVS   ++ +W+ +       L CFH YLLA  QTTNE ++       G          +   NC    C  +P S++
Sbjct:  399 GNCVGLRNYRNFYLFVVLLTILDFLVGACSITHLIMLS--MEHRNFVEAINATPGSVFVSLVAIISVWSVL------GLSCFHTYLLASNQTTNEEVKDTFSDLLGSYCGSLYSTGNLFTNCLATLCAPEPPSLI 525          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8496.17515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNK6_9PHAE1.610e-9787.20Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FZN5_ECTSI6.450e-7690.24Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
D8LTN2_ECTSI1.290e-4354.11Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S3UWP6_HETAK6.860e-3440.36Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YZ83_9STRA6.140e-3241.29Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A6H5LMK7_9PHAE2.020e-1451.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812WJG5_SYMMI2.360e-1129.63Palmitoyltransferase n=1 Tax=Symbiodinium microadr... [more]
F0Y087_AURAN6.960e-1137.37Palmitoyltransferase n=1 Tax=Aureococcus anophagef... [more]
A0A7R9UDC7_9STRA2.380e-1038.46Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1I7RVI0_BURXY3.600e-1034.81Palmitoyltransferase n=2 Tax=Bursaphelenchus xylop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8496contigL-elsbetiae_contig8496:296..3324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.0
Seed ortholog evalue9.5e-62
Seed eggNOG ortholog2880.D7FZN5
KEGG koko:K16675,ko:K20030,ko:K20032
KEGG TC9.B.37.1,9.B.37.3
KEGG Pathwayko04391,map04391
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons3
Model size495
Cds size495
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8496.17515.1prot_L-elsbetiae_contig8496.17515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8496 296..3324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816931.645989-CDS-L-elsbetiae_contig8496:295..4561622816931.645989-CDS-L-elsbetiae_contig8496:295..456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8496 296..456 +
1691683921.726307-CDS-L-elsbetiae_contig8496:295..4561691683921.726307-CDS-L-elsbetiae_contig8496:295..456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8496 296..456 +
1622816931.6586041-CDS-L-elsbetiae_contig8496:1059..12691622816931.6586041-CDS-L-elsbetiae_contig8496:1059..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8496 1060..1269 +
1691683921.7396193-CDS-L-elsbetiae_contig8496:1059..12691691683921.7396193-CDS-L-elsbetiae_contig8496:1059..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8496 1060..1269 +
1622816931.672849-CDS-L-elsbetiae_contig8496:3200..33241622816931.672849-CDS-L-elsbetiae_contig8496:3200..3324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8496 3201..3324 +
1691683921.7527473-CDS-L-elsbetiae_contig8496:3200..33241691683921.7527473-CDS-L-elsbetiae_contig8496:3200..3324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8496 3201..3324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8496.17515.1

>prot_L-elsbetiae_contig8496.17515.1 ID=prot_L-elsbetiae_contig8496.17515.1|Name=mRNA_L-elsbetiae_contig8496.17515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
TGNCVGARNYRAFMAFIILVTISASLVCAMSVLHTVTRTGHVGPLHLTDS
INLPGSRFVSPVLGMWAAMITILVGALLCFHIYLLAKGQTTNEYLRGEKR
RGNVPHRSFGPNCRELWCGTQPSSMLKDMTEFPTGQSVHGGINYTESAYT
ELQEVIQPQGGDMV*
back to top

mRNA from alignment at L-elsbetiae_contig8496:296..3324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8496.17515.1 ID=mRNA_L-elsbetiae_contig8496.17515.1|Name=mRNA_L-elsbetiae_contig8496.17515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3029bp|location=Sequence derived from alignment at L-elsbetiae_contig8496:296..3324+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGCAACTGTGTCGGTGCCCGCAACTACCGCGCGTTCATGGCGTTCAT CATCCTGGTGACCATCAGCGCGTCCCTCGTGTGCGCCATGAGCGTCTTGC ACACCGTCACCCGAACGGGGCACGTGGGGCCGTTGCACCTCACCGATTCC ATCAACCTACCGTGAGTAACTAACTCTCTGCTACAAGTAAATATTTAAAG TTTTTATTCGTTTTTTTTTTTTTTTTTTTCAAGTTTTTAGCGCGATCGGT CTACGTCCGCCTGTGAAGATGTCGTTAAGACCGACATCCACGAGACAGAG AGACCCTGCTGCTGCCGCAGACTCTCGTTTTCAACTCTGGTGTCGTCTCC CTCCTGAAACGGCATCCCCGAGACATAGAGCAAGCAAGTGCTTGCGTGCC CGCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCGGGGGGGGGACGGCC CCGGCCCCCCCCCACAACGAAGGACGCGGCGCGCCCCCCCTCTTCCCCCC CGGCCTCCCCCCCCCCCCCCAACCCCCACCCCCACCCGCGGGGCGACGCG GGGCGCCCCCCCCCCCCCCCCCCCCCCCCCCGACCCAATGAGGATGCGTG GGGGATTTACTACTGCACCCCCCTCGAAAAGGATCGTCGGGGGGTCCACA CTTATATCAAAGGAGTACATGCCCCCCCCCCGTACGCCCCTCCTGAATCC CCCCCCCGCCCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCT CGCGGTTGTTTCAGGGGAAGCCGTTTCGTGAGCCCGGTGCTGGGGATGTG GGCGGCGATGATCACGATCCTGGTCGGGGCGCTGCTGTGCTTCCACATCT ACCTCCTGGCGAAGGGCCAGACGACCAACGAGTACCTCAGAGGAGAGAAG CGCAGGGGGAACGTGCCGCACCGGTCCTTCGGCCCGAACTGCCGGGAGCT GTGGTGCGGGACGCAGCCGAGCAGGTCAGTGCGCTCGCGGGCGGGGACGG GGGCGGGGGCGGGGGCGGGCCGGTGGTCTATACACGCAGGGTTTTCATCT TTTCATCTTCAGCTGACATATGAGATAAAGTATGGAAAACCGGGAAAGGG GGGTCGGTGGTTGGGGTTAGGGTTAGGGTTATTTTCCTAGATAAACTTAG CTTCCGGCGTAGGCGATCCCGGCGCGCGGGCGCGCGGGCGCCCCTCCGCT GCCTGCCCGCCCCCCTTTTCTTTTACCCCTCACGTTGTTGTTGTTGTTGT TGTTGTTGTTGTTTCTCGCATTAGCTCTCTACATGGTCCAAAAACATCCT TGGGGGCCCGGCCCGTGGTCACAAAACACTTAAGGGGGCACACTCGACGC CGCAGAAGAAACAGTAAAATATGTAGAAGTATGTTTGTATGTATGATAGA GATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTCACATTGGCTCTCT AAATACATGGTCCAAAAACATCCATGGGGGCCCGGCGTGGTCACAAAGAC AGGACACACTCGACGCCGCTGAAGAAACTGTAAAACAAAACTACGATTGT ACGTATGTATGTACGCTCCAGGCAATACTAAACTGACTCCCAGAGGGGTC TTGTGTCTCGCTAGCACAAAAAAATTAAACATAAGGTACATAGGCGTAAT CACGTTGACGAGGGAAAGGGACAGCTGAACCCTTCTCGCGATAAAACCCA AGGCAAGAACCGCAGGAGGAAAGTGGGGCAAAAAAAAAAAAAAAAAAAAA AAAAAAGCCCCAGTGTTCACCTCCCCCTGTGGACCCCGGTTGGTTCTAGT TGTACAGACAAATGCGCTACAAAGTGTAGTACCTCTAAGTACACCTCAAG GTGTAGTACACGTCTCCACTTGGGGGGACTGTCGCCAAAGTTAATGGAAA GGACACACGCACACACTACATACTACTTCGGAAGATAAAATAAAGTAAAG CTAGAAAAAGCAGATACCACGCCAGGTGTGTTGTTGGTGCTGTTGTGCTT TTGGTCCCCATCTCTTCTTTTGGTCCCCATCTCTTCTGGCGTCTGTCTCG CGTTTCAGCCGGCATGTGTAGGCACTCACGCATTTCCCCACGTGTGCAGC ATTATTTGTGTAGCACGGCCTTGGACGTGCCCGTTCTCGTGTGCGATGTG CAGCGGGAGAAGTGTTTATGTATTGTAGCCTCGACTATTTGTTGCTCCTC GCGCTTGCAACGGGCAGCTGCAGCAGTCAGTGCTGGTGTGCGTACGTTCG ACGCAAAGAATCACGATAAACTTCAAGTCACACTGTTGTTGTGCACCATA CGTTTTTTTTGTGTGTGTTCGTGTGCAGATTTGGCAGCCAGCCGTTCGGA GTATTATTGTAGAGAACGTGTTTTTGTCGCGAAGTTGTGGGCAGCTCCGG CGTTGGCGGTGCATCCCTATGCGAGTGCTGCGCGTGCAATGCGGATGATG CACAGGGCCAAGATGGTCGCAACCTGGCCCGTGTAGGTGGATACATCGTA TTCGAAAAAAGACTCATAAATATGTAGAAGTACCAAAGAAGCGCCTGTGA TCCTCCTCACCCATTTTGTTTTTTGCTCCTCCCATTAATTATTGGCATAT TTGTCGTCTGCCCCACTGGCCCCCATACTCCACTACCACTAGCTAGACGA CCCAACCGGGGTCACACAGGGGGGGGGGGGGGGGGTGTACCCCCTCCTCC TGCGGTGCCTGCCTGTTAGGTTCTTATCGCGAGCATGCGTGGTGCTGTGT CTCACTCTCCCTTCCCCCGTCTTGTACGCTGCGCTCCCGTCGCTTTGCTT TTCCCGCCCGCTGAACGACGATCCGAAATGACGCCATCCCTCGTGGTGGA TGGTCTCGACGACGCCCGGACCGTTTTTGTGTGGATGGCCGCCCGTACCC ATCAGCATGCTGAAAGACATGACCGAGTTCCCCACCGGCCAGAGCGTCCA CGGCGGGATCAACTACACGGAAAGCGCTTACACCGAGCTGCAGGAAGTCA TCCAGCCGCAAGGCGGTGACATGGTGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8496:296..3324+

>mRNA_L-elsbetiae_contig8496.17515.1 ID=mRNA_L-elsbetiae_contig8496.17515.1|Name=mRNA_L-elsbetiae_contig8496.17515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig8496:296..3324+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGCAACTGTGTCGGTGCCCGCAACTACCGCGCGTTCATGGCGTTCAT
CATCCTGGTGACCATCAGCGCGTCCCTCGTGTGCGCCATGAGCGTCTTGC
ACACCGTCACCCGAACGGGGCACGTGGGGCCGTTGCACCTCACCGATTCC
ATCAACCTACCACCGGCAACTGTGTCGGTGCCCGCAACTACCGCGCGTTC
ATGGCGTTCATCATCCTGGTGACCATCAGCGCGTCCCTCGTGTGCGCCAT
GAGCGTCTTGCACACCGTCACCCGAACGGGGCACGTGGGGCCGTTGCACC
TCACCGATTCCATCAACCTACCGGGAAGCCGTTTCGTGAGCCCGGTGCTG
GGGATGTGGGCGGCGATGATCACGATCCTGGTCGGGGCGCTGCTGTGCTT
CCACATCTACCTCCTGGCGAAGGGCCAGACGACCAACGAGTACCTCAGAG
GAGAGAAGCGCAGGGGGAACGTGCCGCACCGGTCCTTCGGCCCGAACTGC
CGGGAGCTGTGGTGCGGGACGCAGCCGAGCAGGGGAAGCCGTTTCGTGAG
CCCGGTGCTGGGGATGTGGGCGGCGATGATCACGATCCTGGTCGGGGCGC
TGCTGTGCTTCCACATCTACCTCCTGGCGAAGGGCCAGACGACCAACGAG
TACCTCAGAGGAGAGAAGCGCAGGGGGAACGTGCCGCACCGGTCCTTCGG
CCCGAACTGCCGGGAGCTGTGGTGCGGGACGCAGCCGAGCAGCATGCTGA
AAGACATGACCGAGTTCCCCACCGGCCAGAGCGTCCACGGCGGGATCAAC
TACACGGAAAGCGCTTACACCGAGCTGCAGGAAGTCATCCAGCCGCAAGG
CGGTGACATGGTGTGACATGCTGAAAGACATGACCGAGTTCCCCACCGGC
CAGAGCGTCCACGGCGGGATCAACTACACGGAAAGCGCTTACACCGAGCT
GCAGGAAGTCATCCAGCCGCAAGGCGGTGACATGGTGTGA
back to top