mRNA_L-elsbetiae_contig8494.17513.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: D8LHQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ6_ECTSI) HSP 1 Score: 306 bits (783), Expect = 2.010e-90 Identity = 172/251 (68.53%), Postives = 193/251 (76.89%), Query Frame = 1 Query: 58 GTAVPPGGSREIRARPELANRRREGGGAVPAMGAPWRGGQAEGKARAVAGLRKLGRCLLKMPWVNKYEFRGRARVPIIAMVDARGGVECDVGW----GGGDGLDDPANAPGPTYFANMFPGTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIASHLQACGCGRAGQQ-HDLGDLLLGFLRRYSVTSKERITPTTVLRIKGLTVDLGSAFRAIEASMAFGRASEELSPA----AKSADDSHLEGKGK 783 G AVPPGG EI ARP LA RR G + PWRGG+A GKARAV+GLRKLG+ LLK WV K+EFR RA+VPIIAM+DARGGV+CDV W GGGD +DPA APGPTYFA MFPGTFRPLAL LK VFMRQRG+DKPFTGG+GSFKLYALIASHLQACGC RA QQ DLG LLLGF RRYS TSKER+ PTTVLR+K LTVDLGSA+RA+ AS F +A++ LS A A S+ + L +GK Sbjct: 1199 GIAVPPGGVLEIHARPGLAGRR----GGWDSGREPWRGGRAGGKARAVSGLRKLGKQLLKKRWVEKFEFRSRAKVPIIAMLDARGGVDCDVSWAGDGGGGDCWEDPAEAPGPTYFAKMFPGTFRPLALILK-VFMRQRGLDKPFTGGVGSFKLYALIASHLQACGCERAQQQPRDLGHLLLGFFRRYSYTSKERLAPTTVLRVKDLTVDLGSAYRAMAASKDFAKAAQALSLAIAEEASSSKNRGLSAEGK 1444
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: A0A6H5JXD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD9_9PHAE) HSP 1 Score: 287 bits (735), Expect = 5.480e-84 Identity = 174/270 (64.44%), Postives = 196/270 (72.59%), Query Frame = 1 Query: 1 LQAALTVAAGAAAKRRLSVGTAVPPGGSREIRARPELANRRREGGGAVPAMGAPWRGGQAEGKARAVAGLRKLGRCLLKMPWVNKYEFRGRARVPIIAMVDARGGVECDVGW----GGGDGLDDPANAPGPTYFANMFPGTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIASHLQACGCGRAGQQ-HDLGDLLLGFLRRYSVTSKERITPTTVLRIKGLTVDLGSAFRAIEASMAFGRASEELSPA----AKSADDSHLEGKGK 783 LQAALT +A AAAKRR S G AVPP G +I ARP LA +R G + AP GKARAV+ G+ LLK WV K+EFR RA+VPIIAM+DARGGV+CDV W GGGD +DP APGP YFA MFPGTFRPLAL LK VFMRQRG+DKPFTGG+GSFKLYALIASHLQACGCGRA QQ DLG LLLGF RRYS TSKER+ PTTVLR+K LTVDLGSA+RA+ AS F RA++ LS A A S+ + L +GK Sbjct: 1240 LQAALTASAEAAAKRRRS-GIAVPPEGVLKIHARPGLAGKR----GGWGSGRAPXXXXXXGGKARAVS-----GKHLLKKRWVEKFEFRSRAKVPIIAMLDARGGVDCDVSWAGDGGGGDCWEDPTEAPGPAYFAKMFPGTFRPLALILK-VFMRQRGLDKPFTGGVGSFKLYALIASHLQACGCGRAQQQPRDLGQLLLGFFRRYSYTSKERLAPTTVLRVKDLTVDLGSAYRAMAASKDFARAAQALSLAIAEEASSSKNGGLSAEGK 1498
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: A0A7S4QNC3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QNC3_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 5.310e-14 Identity = 57/143 (39.86%), Postives = 72/143 (50.35%), Query Frame = 1 Query: 187 KARAVAGLRKLGRCLLKMPWVNKYEFRGRARVPIIAMVDARGGVECDVGWGGGDGLDDPANAPGPTYFANMFPGTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIA----SHLQACGCGRAGQQHDLGDLLLGFLRRY 603 + + +A LR LG+ L K P + E R ARVPII V R G E D+ GG +G D A G F + L K+ +RQ +DKPFTGGLGS+KLY L+A HL GC R + +LL F RY Sbjct: 722 RKKVIAALRSLGKKLWKSPLAHTVEVRRHARVPII-NVATRFGFEGDIALGGHNGTDTSHYAAGQVQQYRSFA-----CVVLLLKILLRQTDLDKPFTGGLGSYKLYVLVAYHMEQHLALGGCDRPSE------VLLSFFHRY 852
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: A0A7S4JQU7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JQU7_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 3.220e-13 Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 1 Query: 148 AMGAPWRGGQAEGKARAVAGLRKLGRCLLKMPWVNKYEFRGRARVPIIAMVDARGGVECDVGWGGGDGLDDPANAPGPTYFANMFPGTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIASHLQACGCGRAGQQHDLGDLLLGFLRRY 603 A AP+ G Q E + R + LRK+ + L + P + EFR +ARVPI+ R G + D+ GG +G D A A +F P+ LFLK + + Q +DKPFTGGLGS+KLY L+A H++ G L ++LL FL R+ Sbjct: 829 APNAPY-GPQGEDRKRVLTALRKMTKRLWRHPMTHTVEFRSKARVPIVCA-SLRLGFDADLAIGGHNGTDTGGYAG---CMAEKHR-SFAPVVLFLK-ILLHQTDLDKPFTGGLGSYKLYVLVAHHVEKHKA--LGGTDRLSEVLLTFLLRF 971
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: A0A7S2REY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2REY8_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.770e-13 Identity = 49/110 (44.55%), Postives = 62/110 (56.36%), Query Frame = 1 Query: 199 VAGLRKLGRCLLKMPWVNKYEFRGRARVPIIAMVDARGGVECDVGWGGGDGLDDPANAPGPTYFANMFPGTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIASHL 528 ++ LR L + L K V+ E R RARVPIIA+ + R G E D+ GG +G D A FP L LK +F RQ +DKPFTGGLGS+KLY L+A H+ Sbjct: 27 ISALRTLSKKLWKSEVVHTVELRTRARVPIIAL-NTRLGFESDIALGGHNGTDTSLYASKQVDRFKSFPEVM----LLLKSLF-RQTDLDKPFTGGLGSYKLYVLVAKHV 130
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: A0A7S3HNA6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNA6_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 6.160e-13 Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 1 Query: 208 LRKLGRCLLKMPWVNKYEFRGRARVPIIAMVDARGGVECDVGWGGGDGLDDPANAPGPTYFANMFPGTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIASHLQACGCGRAGQQHDLGDLLLGFLRRYSVTSKERITPTTVLRIKG 657 L KL + + M WV + EFR ARVPI+ + R GVECDV D + + P + L+ FLK +++ Q G+D PFTGGLGS+KLY L+A H++ Q LG LL+ FL+ YS ++ + TV+ + G Sbjct: 277 LAKLYKTIKSMAWVQRIEFRKHARVPILNLTH-RNGVECDVSL---DMSQQATSLVVRSLLQRCGPALAK-LSAFLK-IYLNQLGLDAPFTGGLGSYKLYVLLARHIERE--PELAQTQALGPLLVSFLKFYS--HRKNMHEGTVVEVAG 416
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: B8BQD9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQD9_THAPS) HSP 1 Score: 75.1 bits (183), Expect = 4.150e-11 Identity = 64/177 (36.16%), Postives = 89/177 (50.28%), Query Frame = 1 Query: 187 KARAVAGLRKLGRCLLKMPWVNKYEFRGRARVPIIAMVDARGGVECDVGWGGGDGLDDPANAPGPTYFANMFPGTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIASHLQACGCGRAGQQHDLGDLLLGFLRRYSVTSKERITPTT----VLRIKGLT------VDLGSAFR 687 + R V+ L+ L L + + + E R RA+VPII + R G E D+ GG +G+D A A T F +F + L LK V ++Q G+DKPFTGGLGS+KLY L+A H++ G ++L+ L RY T +T LR KGL DL + FR Sbjct: 668 RMRVVSVLQSLTTQLRRSSFTHTIECRSRAKVPIINC-NTRTGFEGDIAIGGHNGVDTSAYAM--TQVKRFF--SFASVVLLLKVVSVQQ-GLDKPFTGGLGSYKLYVLVAHHIEQH-LANGGNDRP-SEILISILFRYGRVGSADDTASTDLKDQLRYKGLIHSDGGLCDLSNVFR 836
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: A0A1Z5JZM4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZM4_FISSO) HSP 1 Score: 72.8 bits (177), Expect = 2.080e-10 Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 244 WVNKYEFRGRARVPIIAMVDARGGVECDVGWGGGDGLDDPANAPGPTYFANMFPGTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIASHLQACGCGRAGQQHDLGDLLLGFLRRY 603 W+ K F +ARVPI+ M D GVE DV GG +G D A + +F + LFLK + + Q +D P+TGGLGS+KLY L+A H+Q AG Q + G++L+ F R+ Sbjct: 415 WIRKVTFITKARVPILKM-DTTLGVEVDVAIGGHNGTDTSQFAAKQSELYK----SFATVVLFLKAL-LHQHRLDVPYTGGLGSYKLYVLVAYHIQQHLL--AGGQDEPGEVLMSFFFRF 526
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: A0A7S3Q6E9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q6E9_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 3.190e-10 Identity = 49/154 (31.82%), Postives = 75/154 (48.70%), Query Frame = 1 Query: 169 GGQAEGKARAVAGLRKLGRCLLKMPWVNKYEFRGRARVPIIAMVDARGGVECDVGWGGGDGLDDPANAPGPTYFANMFP----GTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIASHLQACGCGRAGQQHDLGDLLLGFLRRYSVTSK 618 G E + + + L +G+ L K P+ R ARVPII M R G + D+ GG +G D Y + +F + LFLK + ++Q +DKPF+GGLGS++LY L+A+H G ++++ F RYS +K Sbjct: 547 GPSGESRKKVLKALALMGKRLRKAPFSRNIHVRKHARVPIICMT-TRSGFDTDIALGGHNGTDT------SHYVRKLVDKYGKNSFATVVLFLK-ILLQQADLDKPFSGGLGSYRLYVLVANHFNMH--TSLGGGDSAAEMMVSFFFRYSTPTK 690
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Match: A0A7S4AF91_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AF91_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 9.670e-10 Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1 Query: 250 NKYEFRGRARVPIIAMVDARGGVECDVGWGGGDGLDDPANAPGPTYFANMFPGTFRPLALFLKKVFMRQRGMDKPFTGGLGSFKLYALIASHLQ 531 ++ R +ARVPII M+ G ECD+ GG +G D + A T + +F L +FLK + + Q+G+DKPFTGG+GS+ LY L+ASHL+ Sbjct: 506 SQIHVRSKARVPIINML-TNFGFECDIALGGHNGADTSSYAS--TQLSRF--KSFSTLVVFLK-ILLGQQGLDKPFTGGIGSYSLYVLVASHLE 593 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8494.17513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8494.17513.1 >prot_L-elsbetiae_contig8494.17513.1 ID=prot_L-elsbetiae_contig8494.17513.1|Name=mRNA_L-elsbetiae_contig8494.17513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=341bp LQAALTVAAGAAAKRRLSVGTAVPPGGSREIRARPELANRRREGGGAVPAback to top mRNA from alignment at L-elsbetiae_contig8494:2201..8577- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8494.17513.1 ID=mRNA_L-elsbetiae_contig8494.17513.1|Name=mRNA_L-elsbetiae_contig8494.17513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6377bp|location=Sequence derived from alignment at L-elsbetiae_contig8494:2201..8577- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8494:2201..8577- >mRNA_L-elsbetiae_contig8494.17513.1 ID=mRNA_L-elsbetiae_contig8494.17513.1|Name=mRNA_L-elsbetiae_contig8494.17513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2046bp|location=Sequence derived from alignment at L-elsbetiae_contig8494:2201..8577- (Laminarionema elsbetiae ELsaHSoW15)back to top |