mRNA_L-elsbetiae_contig849.17508.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig849.17508.1
Unique NamemRNA_L-elsbetiae_contig849.17508.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig849.17508.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.180e-12
Identity = 46/122 (37.70%), Postives = 58/122 (47.54%), Query Frame = 3 
Query:   87 ETCPGDIAGILSGDGTVCCDLECGQCGGLGCGGQPGGQGN-----CCIGGPNGILSNAGDCATTGAAPCLVG-------ETCDGTIPGILSGDGSACCELECGQ-CGGVQCQFLPGGPGSCC 413
            +TC G I+G+ S    VCC LECG CGG+GC   P    +     CC      I  +   C+ TG APC++          CD    G+   D   CC LECG+ CGG  C  +PG   S C
Sbjct:   23 QTCAGGISGVESTSLDVCCTLECGTCGGVGC--TPANTSSLTANDCCA---TEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQC 139
[Close]
BLAST of mRNA_L-elsbetiae_contig849.17508.1 vs. uniprot
Match: A0A7S3AZ70_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ70_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 5.650e-9
Identity = 42/118 (35.59%), Postives = 51/118 (43.22%), Query Frame = 3 
Query:   84 DETCPGDIAGILSGDGT-------VCCDLECGQCGGLGCGGQPGGQGNCCIGGPNGILSNAGDCATTGAAPCLVGETCDG-TIPGILSGDGSACCELECGQCGGVQCQFLPGGPGSCC 413
            D +C   I G    +G+       VCC   C QC    C  +PGG   CC G P  I   A  C+    APC +     G  I G++   G ACC+  CG CGG  C    GG   CC
Sbjct:   44 DPSCVDGILGTDVSNGSDDGRRYHVCCPSSCKQCSSSECSHRPGGHHKCC-GEP--IRKRASQCSVDEHAPCWLPSATRGWCINGVVDALGVACCDKNCGSCGGAGCSKRTGGRSKCC 158
[Close]
BLAST of mRNA_L-elsbetiae_contig849.17508.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.780e-9
Identity = 44/116 (37.93%), Postives = 57/116 (49.14%), Query Frame = 3 
Query:   90 TCPGDIAGILSGDGTVCCDLECGQCGGLGCGGQPG-GQGNCCIGGPNGILSNAGDCATTGAAPCLVGE------TCDGTIPGILSGDGSACCELECGQCGGVQCQFLPGGPGS-CC 413
            TC   ++G+  G   VCC +ECG CGG GCG +PG  + +CC    + I  +   C+ T  APC++ E      TC     G+  GD   CC   CG CGG  C    G  G  CC
Sbjct:   23 TCSNGLSGLEKGG--VCCPVECGTCGGTGCGSRPGLTKYDCCT---STIKEDNHLCSVTKEAPCVIDEETEADPTCSN---GVAKGD--ICCSAGCGYCGGTGCAGRGGLSGDECC 128
[Close]
BLAST of mRNA_L-elsbetiae_contig849.17508.1 vs. uniprot
Match: A0A836CQF3_9STRA (Cation_ATPase_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQF3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.980e-6
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 3 
Query:   57 ALRGSRNLEDETCPGDIAGILSGDGTVCCDLECGQCGGLGCGGQPGGQGNCCIGGPNGILSNAGDCATTGAAPCL 281
            AL  +R +    C G + G+L  +   CC   CG+CGG GC G+PGG   CC    + I S+   C+  G+APC+
Sbjct:   12 ALITTRAIFAADCGGGVEGLLGPNKQSCCPYSCGECGGYGCAGRPGGADACC---ESEIYSSKPLCSKAGSAPCV 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig849.17508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LG71_ECTSI4.180e-1237.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3AZ70_9EUKA5.650e-935.59Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A6H5JNF5_9PHAE5.780e-937.93MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A836CQF3_9STRA9.980e-638.67Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig849contigL-elsbetiae_contig849:22344..31394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue7.5e-15
Seed eggNOG ortholog2880.D7FQV4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size431
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig849.17508.1prot_L-elsbetiae_contig849.17508.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig849 22349..31394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816930.9316597-UTR-L-elsbetiae_contig849:22343..223481622816930.9316597-UTR-L-elsbetiae_contig849:22343..22348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig849 22344..22348 +
1691683921.1382022-UTR-L-elsbetiae_contig849:22343..223481691683921.1382022-UTR-L-elsbetiae_contig849:22343..22348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig849 22344..22348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816930.942218-CDS-L-elsbetiae_contig849:22348..223791622816930.942218-CDS-L-elsbetiae_contig849:22348..22379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig849 22349..22379 +
1691683921.1486547-CDS-L-elsbetiae_contig849:22348..223791691683921.1486547-CDS-L-elsbetiae_contig849:22348..22379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig849 22349..22379 +
1622816930.9532456-CDS-L-elsbetiae_contig849:26528..265761622816930.9532456-CDS-L-elsbetiae_contig849:26528..26576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig849 26529..26576 +
1691683921.1584153-CDS-L-elsbetiae_contig849:26528..265761691683921.1584153-CDS-L-elsbetiae_contig849:26528..26576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig849 26529..26576 +
1622816930.9655185-CDS-L-elsbetiae_contig849:29605..298061622816930.9655185-CDS-L-elsbetiae_contig849:29605..29806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig849 29606..29806 +
1691683921.1692474-CDS-L-elsbetiae_contig849:29605..298061691683921.1692474-CDS-L-elsbetiae_contig849:29605..29806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig849 29606..29806 +
1622816930.9764209-CDS-L-elsbetiae_contig849:31248..313941622816930.9764209-CDS-L-elsbetiae_contig849:31248..31394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig849 31249..31394 +
1691683921.1775815-CDS-L-elsbetiae_contig849:31248..313941691683921.1775815-CDS-L-elsbetiae_contig849:31248..31394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig849 31249..31394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig849.17508.1

>prot_L-elsbetiae_contig849.17508.1 ID=prot_L-elsbetiae_contig849.17508.1|Name=mRNA_L-elsbetiae_contig849.17508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
MSNESTAAAVGKAARSSALRGSRNLEDETCPGDIAGILSGDGTVCCDLEC
GQCGGLGCGGQPGGQGNCCIGGPNGILSNAGDCATTGAAPCLVGETCDGT
IPGILSGDGSACCELECGQCGGVQCQFLPGGPGSCCIGGVNG
back to top

mRNA from alignment at L-elsbetiae_contig849:22344..31394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig849.17508.1 ID=mRNA_L-elsbetiae_contig849.17508.1|Name=mRNA_L-elsbetiae_contig849.17508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9051bp|location=Sequence derived from alignment at L-elsbetiae_contig849:22344..31394+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCGATGTCGAACGAGAGCACTGCTGCTGCTGTAGGTGAGCTTTCTTCG
TAGATTTTGCCTAACAATGCGCTTGCATGGTGACAAAAGCAGTGAGGACG
TGGACAGGGAAGGCTGCTACCTTTGCACAGCGTAGAGACAACTCTGAGGT
GCAGTAGGGCTCGCTGTCTGTAGCGCACAAGCACATCCAACCCCACTTTC
GCACTTTGGATCTTCTCATTCTTCGCGGACCCGATTCACTATTTTCACGC
TTCCCAAGAACGGTGACGAGCATCATGTGCTTCCTCGGATATCTTGGAAA
TGAGGGCTAGCTTGGCTTTCGATGAGGAGATTTCGAGCATTGTTTCCTCG
CACCACAATGCGGCTCGTTGGGATTGCTTGTTATTTCCGTGGTAATAAAC
TCTTCAAAAGACACAAAAGTGGAAATTTGACACACAACAGCAGTGACTGG
CAATTCACCACAAGCAGGTGTGCTCACGATCGAACATGACCTAGCGGATT
CATTAACGCTGTTTGCACGCGGGTCAGTCACTGCTGTTGCATAAAAGCCT
CTGTCTCGTCTACCTGGCTGTCGGCCGCCGACTGCCGCTCTACCCAGCAG
CGCGCACATAAGTATATCATATTGTTCTCTCAAGCCGGTTGCCACAAATG
GATCTCGCATATCCACATCATATAAATATGCTAGGTACATGCAAACTTCT
GTGATACTGAAGACTTATCATACTCACAGAACGTCATCGTACGGCGCACT
AGAACACTAGAAAATAGTAGGAATGGGATCCCCAAAAATGTGTATCTAGA
TTCACAGAGAGAGGGGAAGAGGTGCACACACCGCTGCTCCACACACATGC
CGACAACAAACAATCCCTCCATGTGCAGTAAGCAGCATGCTCCCTTCAAA
CTCTCGCGTACGATACCACATCTTACCACACAGAACTATCGTGCTGCATA
ATGTTGAGATATCGATGTGTAGTGTAGGGCTGAGCTAGGGGTATGCTCGA
TGCAGGAACCCACGTACTCGCGTCAAAGCTCTCTGTGCACGTAGTTGGTA
CAGTAGCTAGTGCTGGGATCGTTAAATCACATGCTCCAAGAGAGATGCGT
TCATGCTCTTTCTTAGAAGTTGCTCAGAAGCAAAGGGAGTTGCTCGAAAG
CAAAATGGGAGTGAATCGATGAGGGCTCGAAAGCACGCACATCGATCCAT
TGGAAGAAATGATTCTTCGCAGTCAAGCCAACAATTGCGCCGAATGCGCC
TTCAGTAATTGCACCGAATGTACCTTCATCAGCAGTTGCGCCGAGTGCAC
ACAGCAATCCCGACTATCATTTCACACGAAACTCTCCGCGTGTAATGAAT
CTATATTGATATCTACAACAAATACGTAACTACACTCCTGCAGTCAATTA
AAAAGGAAGTGGCACCAGGGCTACATCAAGTACTTCGGTTGAGATAGCCT
GTTCTACTAGACCATAACTATTAACATTGTTTCGTACACCGAATCCTCTA
AACGTTTTCACTTCCGATCAGTCTTCTGAATCTGGCACCTGTGCCGCAAA
CAGGCGTGGAGCCCCTGTTGCTTCCCCTAGTATGTAACATACCATACATC
AGTGTTGAAGATTGACATCGAGTTTCGATTCGAATTCGATTTTTTGGGGA
AATACGCTGTATCGAGATTGCCGGTTTGAACACCGATTTTTGTCGATACG
AATCAGTATCGGGTATCGAGATCGGTATGATATATGTTCGATATTAGGGC
CCCTTTTGCATGAATTATAGGGGGGGTGTTGGTTTCCCAGCTGCCGACCT
CCCTGTGGAACCGAACCTTCTCCCCCACCCTCTCACCCTCCTCTCACCCC
ACAACCACACCACAGCCCACAAAAAACCACCACACCACCAGCCATACAGC
ACTACTCGCTGCGAATGAATATGAGCCTTCAAGAGTTCGGCTTTGTCCCT
GGCGACAGCGCAGCCTCGGCGGTGGACGTTTCTGCGTAAAATAGAAGACG
TGCATTTTACATTTGTTTTTATTTTTTGTAATTGCGAAGTTTGATGGCGT
TTTTTTCAAGTCTGCGTGTGTGTGTGTGGAGATTCGATCAGCCAATTCGA
TCGCAACAAAATAAAGTGGCGGTCCAAATCGTGGATAATATACACTATAT
ACCAGCTGCTACACACCACACCGGGCCTCTTGTTATGGCGAAACACATTA
TCTGCTACTGTAATCGACGCACCATCACCACAAATGCATGTGCCGACGCT
TTTATAGGTAACAAACTGCACACACGCACGCTGCTGCTGTAGTAACGTGT
GCACTGCTGTGATCTGAACACTAAGGTTAAGTGCTACCTTGTCATGTGCC
ACACTGCGCCAGTACAGCAACTCTGCCGCTCAGTTTTGTAACCTGCAGCC
CTTCTAAAACATGCGTATTGAATCGCGTATCGATACTCGATACGAATCGA
GTTTTTTTTGGAGTATCGAGAGAAATATCGGTATTTGCCCTTTTTTCTCG
ATATTTTAAAATATTGTATCGAACGTTTTCTGCCGACCAATCTTCAACAC
TGCCATACATACATGGGCAGGTTTGCTGAAGCCGTGAAGCGGTGGAACAA
ACAGATATTTATTGAATGCAACCGTCCAATTTGTTTAGATTGGTTCCGAA
GGCGTTCACCGATGTTTTGGGGTACTCAGGGTGAGTTGTATTACACGGCA
CGGAGCCCCTAGTATTTGAGTACATAGAAGGTAGCTCACTTTGTGGGAGC
CACCTATCTGTTCATCTAGAGAGTTTTAGCGCTCCAGGGAGCGTAGCGCA
GAGGAAGGGAGCAAGGTGGACACGTAAAGAGCTTCAAGGAGTTGGTCAGC
TTCATTCAGAAGCGGCCAACATGTCGAGTACATACAATGTACATAGATAC
AAGGTTCCCCGTTCCGGGAGTTGGGTTCATGCTCTCCCGGTGGTGACGCA
AGATTAGAATGCCTAATACTTCTATATATTTCGCCGGACCTTGGGGAAAT
GGTAGCTAGGAAATGGCATCATCTTGGTGGGCCCTCCCATACTACCGCCG
TTGGTATGCACATGATTAACCACACCAAATATATTCGAAGTAAAAATTTA
AAATTCACCACAAAATAAATGCTGCTGTGTCCCGCCGTGGACCATCAAAC
GAAATATTTCGAGTCGGTCTTAAAAGGAGTGTACTATATTGAGGTGATCA
TTTATTTATTGAATCGCGCGATTCTTTCACCGCGCGCGTGCACACACACA
CCCATACACACACAACATGACGAGTACAAAAAACGCCCAAATGTAGAGAC
CACCTTCCAGTCTGTTGAAACTTGTAACTAGTGCCGCTGTTGATGGATGG
GCTGCAATATCTTTTGAGGGCTCTCGGTTTCGTAGAGCCAGATAATATAA
TATCTAAAACCGCAATTGTTTAGTTCCAAATGCCCAGGTTCGGGTTGATG
CACGATAGATTATCCGAATCTACCGAGATCTCGGCGAGATATGTCTCATG
CCCCGTATCTTTTGAGGGCTTTCGGTTTCGTAGAGCCAGATAATATTACA
TCTAAAACCGCAATTGTTTCGTTCAAAATGCCCAGGTTCGGGTTGGTGAA
CGATAGATTATCCGAATCTACCGAGATCTCGGCGAGATGTGTCTCATGCC
CCGTGTGTCTGCCGCGTGAAGATGCGGTGACGCGAGTGATCTTCTTGAAG
CGTGCGACGGCTGATTTGTCGCTACATACTACAGTGTTGATGCTGCGTTT
GTGTCCGCTGATCATAATACCCTTGATTGTGTTTGCGCACATGCTGCGGT
TACAAAGCAGTGCTTCCACATAATAACAACACCCCGCCAACTAACTGTTC
TGGTCCTCAGTTTCCATTTGGAGGAGGCTTTTGTGGTTCGGAAATCGTAC
CCATCCTATAGAGCCAGTGTGGGCGAGTTTTAGGCGGCGACCACGCGAAC
TCCACCGATGTCTGGCGAGATCCGTAGGTCACGGGTAATGCACCGACGGT
CCTACTGAGAGTCGTCGAGAAGAACACACGAGAAAAAGCGATGTACCGAG
AGAGAAAACACGGCAGAAGCACAAAGTTGACAAGGTTCCTATATGTCAAT
ATGAGCAATACGTTGTGTGTAAGCAACTGACAATCTACCCGCTGCTGCTC
TCACTATTCGCGATGCACGCGTGTCTTTCTCCCAGGAAAAGCCGCCCGCT
CGTCGGCCCTCAGGGGAAGCCGCAATTTGGAGGGTGAGCAGAAAGGTTAG
CGAGCACTCCTCCATGTAATGCGGGGTGTATTGTGAAATCTGTGATGACG
TTTCGGCTCGTTGTTTGAGCTACGTACTATTTGTTTCGTGTGTTTTCTAG
ACGTTTGCACCCGTAGGTGTTTGTCGAGCTCAGCGTCACACATCACACAT
TATAAAGCAAATATGTTAAGGTTTGGCCGCTTACGTACATATGACGCGGG
GGGCTAACAGCCCCCCCGTCCTTCGGTGTCTGATAGTTGATACATAGGGC
GAAGGTTCGATAATGTGTGGTTACCGATAATGTGTGGTTACCTAGACTAC
CATCATGGTACCATAGGTGAGAGAAACAGGAACTGAGCGTGTTGTACATA
TATTGTACTACACATATATGTGACTTTCTTTGTCACAATCGTTGAGGCGA
AAAGTGGTCGCGTACTAGGTCGCGAATTTAGTTTTGAAGCCGTCTTGCAT
GAAATGGATCGTAGAAAAGCACGGTCACCCGAAGGAAAACTTTTGATTGG
GCTGACGTGTCCATGAGAAAAAATCTAGCAATTCACGGGCCATGGTGACA
AACAAACGTCCTGGAGCCATCAGAAGATGCTAAGGAACACACGAAGGATG
TGAAGTGTTGAACATAGAGAGTGATGTCTGAAGTCAGAAGTGCTGTCTGA
ATGCCGGTGCTTGCTGATGCTTTGTGGTCTAGTGTGAGTGGTGTTGTGGG
TACAGCAGGCACAGCAAATACTTGAAAGCGTGTGGTGTGATGTGGTGGTG
AGACTGCTGTGTACAGGAGCCGCGCGATGACAGCATTATTGCATGGTGTG
TTTTATTCGGCAACTCGTTTACGGCTCTTTCTCGACGAATTTCTGGCCGT
TTCGGCGCGATTAAATATAAATAAGTGAATCAAAAATGAAATGCGGTTCT
CTGACGTGTAACGGGGCTGTAAAAAGTGCGTCGACACTACACCGCGGCTG
TAGCCGCAGTTTAGCCCTACCTTGACCTGCGACCTTGCACTTTACCAACG
CCCTGTGACCTAGAACTTTCCAAATGCTTCCGAATGGGTAGGGTCGGGTT
GGGGTTAGCGTCTAGGGTAAGGATAAAAAATAGCAGGCAGTCGATGAACC
CGGATCATACGTTGGGCCGTAGAGAAAATAGCACGTTGCGTCAGGTCTGC
AGTTGAGATGAAAATATAACGCCCAGCGTGGTAGACCGCAGTGTCGGCCG
CTGGCCGCTGGTTGATGACATTTGAGCTCGAGCACACCAACTCATTTGTT
GTCCCACTACTAAACTTTCCCTTCAGCGAAACTACTTCTTCTACAGAAGA
GAAGCATACCGATAAATGTCCCGTGATATGATTTACAAAGGTCCTTGATA
ATGTACGAACGTGAGCACAGACACAAAAATCTAACTTCTATAAAACACTC
ACAGGTTGAGGTCTGCAGTTACAACGTTTTGCGGATCGTTTCTAGAGTCA
GTTTTGAGGCGTTGCCCAGCGTTACTCACCGGACCCAAACGCGTCTAGAC
CCGATCCCGCGGCAACGGGTCTGGGTTGGAAAGACTTTTCTCGTTGACCT
CGCGCAAGGGGAAGCCGAACAGTGCTGGCGCGCTGTCGCTGAGAGAGGCA
ACGATCAACATGCTGATTTTTAAGAGAAGAGGAAGTATCGCCGCTTCGCT
GACAGCGCACGCTGAGCTGAGCCGTGAGCGACCGGGATGTTAAGAATCAG
ATTTTGTCATATCAGTTACCTCTGTATGACATACTGACTGAATCTCACGG
AGTCGTCTCCATATTATGGTCTCCGTTTTTGACTGAAAGGTTTCTCTTTC
AAAGCGATTCCAAGGGAATGACATTGTTTTTCTTATCTTCCAAGTCTGAC
TTTGTCGAAAGATTGTGCAACAGCAGTAGAGGTATGTGCGGGGATGGAAG
CACAAAACGGCAGTTGTTTTTTTAACCGTGCTGTGCCTCTGAAAGGGTGC
GAGTTTTATGCTCAGAGGGTACATACGGTGCGCTGTGTCTTTGTTGCAGC
GCTCACAAATCCTGCACACTTGCAGTCGCTGTGAATCCTCGTCTGAAGCA
CATGTTTGTACGAGCGCTTTCAAACATAGAGGGGGGAGCACCGCTTATTT
GCTGTGTCTGGTACCTGTTCGTACTAGGGTAGGGCTGCTGCACGGACTCG
CTGCGCTCACTACAAATACTGCGTCAGTCTTACACTCCTCACGATACCAA
ACTTTCCTGGCGGCTGAGACATGTCGTGCCTGTCAGCTAGGCATTTCGAT
TTCGAGAGCGCTGGGCATTTTCTCAGAATGATCTCTCCTGCGGCTTCGTG
CACTCTGTTTCCGTCAATCCCATCAACTTCCACCTGCATTGTACATGAAG
CCTTCTCGTTCTCGTCTCCCCCACTCCCCCTATGTGCCTCTCAATAATCT
TGTGGAAAGTTGCACGCAGAACCTCACGCGTTGTCGTTGCGGTGAAATCT
GAAAAGTCTGCCAATAGCTGTTGAGATCTCAATATTTAGACTAATGTCTC
ACACAAAAAACAATATCGCGTCCCAATATATCTAGTCTAAGCCATATCAG
TGAATTCAAGTGCCCCCCTCCATTACATGAGGCAGGTGTCAGGAGGGCAT
AGCAAGACCCTCGTAATTATATTCCTACCTCACCCTTTGTTAGTGTTCCT
CTTCTGTTCGAGGATTGAAGGCGTCATTTCAATCCTACGTAGGAGTACAT
CGTAAGAGACCATAAGACCGATCGTCGTCCTGAACGTACATAGACCATGT
ACACAGTAGCGCTTCTTCTCTTCTTGAATGCCGGGGAGTTCCCGAAAACG
ACCGAAAAACACCCAAACAGGAAATTGAACCACCCTACCGTTTTAATCCC
TCCAGCTCGATTGCGGGTCTCGTTGTCGCACTTCTTGCCAAATATTCTGT
GCACCGTAACGAGCTGTAAAATTCACTTTTTTGTCGGCATGAAGAAGAAT
TCACGTACACATTTTATTCTATTCCCGGATATATATATGTATGTATCGTG
TTGGTCCTTCAGACGAGACGTGCCCAGGCGATATCGCCGGCATCCTGTCC
GGTGATGGCACCGTGTGCTGCGACCTCGAGTGCGGGCAGTGTGGAGGGCT
CGGTTGTGGTGGCCAACCGGGGGGACAAGGCAACTGCTGCATCGGCGGAC
CCAACGGCATCTTGTCCAACGCCGGCGATTGCGCCACAACCGGAGCTGCC
CCATGCCTCGTCGGTATGTACGGTCGTACGCGTGTGTGTCCAGTATGTTG
GATGCTGCTGAGTCGTCACACCCAAGAAACACTGATCTGTTCCAGAGTCC
CCCAGCCAAGTATTGAACATACGGTCCATGCACAACAATACGGCCAATCA
ATGATGACGTTTTTTGTCATAGCTTCTGAAATAAATCAATTCGGCCGGAA
TTCCAGCCATCCTAGTGATCCCCAGTCTAAGGGGGAAGAGATGGGCTCGA
GAAAAGTTATATATTGCGGTAGTCTAATTTCAAGTCAACCAAGAGCCACA
CGCAATAAAAACAAAAATGGAACAGGAAAAAAATGGTGTTTTTCGGACAA
AAAAAGCGAATTTCTCGACAACAAGCGTTTTACTCGGCAAAAGAAGAAAA
TCCTTCCAGGTATTAAAGAGAGCAATCGTTTGCCGTGAGCTCTTTTTTTA
GATCGTTCGGTTAGTTTTCACCAAAGAAAGCTTTCAAGTTGGCCTTCTAT
ATATACGGTTTTTGGTCGATACCTCGAGAAAATATCGTTTTTCTCGGGAA
AAAAAAACGCCGCTGGGTATCGATCGGACTCTGGGTTGATTTGACGGTGT
TTTTGATCTAATCGTTTGGTCAGTTTTTATGATAAAAGCTTTCAATTTTT
ACCGGTTTTTTCCCCGTATAAAGTCAAGGAAGAAAAACAAAAACTCTGCC
ACACGACCTGCGGCTGGAGACAGGGCATTTGCAGGTACTTTCGGATTTCG
GAACAACCACGTGTGTGGTGGGAAATAAAAGTGTACGTAGGTGGGGGAAA
TTAGTGGCTGTATTGTTTCGTACGGATCATACCTTAAAGTTGCTCTCGCC
TTTTGATGCTGTCACATTATTAATGGATGCAGACTTATGCTGCTGTGAGA
TATTATCTGCGGTGCATAGTGGTGTGCCCCTCTCTCGTTCCTCGCCGGCT
CTCCCTTTGCAGGCCCTCTCGTATGTATGCCATCTGCATCATACTCGAAA
CACCATCATCCATGGTCCATGTTTTCAACTCATGTAAATCCTGCTGTAGA
AACATATGTATATATGTACTGTGTCGAAAGGCGCCGCGGGTCCCGCAGGT
TCTATTTTCGCGGCTCGGCGTGGTTGCTGGTTGGAGATCGTTTGTCCCAC
CTCTACATTCCGAGTGGCACTACAACTTATTCCATGTTTTTTTTTGCTCC
AAAGGACAGGAGCAGCGGCCTTTCGGGGCTCAAGTGCAATTTCACAGGGT
GCGGTGCGCCTAGATGTAACGGTTCTCTTACTCTTGACCGTTGAGTCGTC
CACCTCGAGCCTCGGTCGAGTTGTCTCCCCAGCCCCTCTGTTCAGCTCGA
CGTTGGGTGAAACAAAACGGCATAAACACATGAACTTAACTCGTGTTTGC
TTCGTGGATGTTAGAATGAATATAATGCGGACATAATCGTCCCTTGACCC
TCCAGGCGAGACGTGCGACGGAACCATTCCCGGCATCCTGTCCGGTGACG
GCAGCGCGTGCTGCGAGCTTGAGTGCGGGCAGTGCGGAGGCGTCCAGTGC
CAGTTTCTTCCCGGGGGTCCAGGCAGCTGTTGCATCGGCGGAGTCAACGG
C
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig849:22344..31394+

>mRNA_L-elsbetiae_contig849.17508.1 ID=mRNA_L-elsbetiae_contig849.17508.1|Name=mRNA_L-elsbetiae_contig849.17508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig849:22344..31394+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAACGAGAGCACTGCTGCTGCTGTAGATGTCGAACGAGAGCACTG
CTGCTGCTGTAGGAAAAGCCGCCCGCTCGTCGGCCCTCAGGGGAAGCCGC
AATTTGGAGGGAAAAGCCGCCCGCTCGTCGGCCCTCAGGGGAAGCCGCAA
TTTGGAGGACGAGACGTGCCCAGGCGATATCGCCGGCATCCTGTCCGGTG
ATGGCACCGTGTGCTGCGACCTCGAGTGCGGGCAGTGTGGAGGGCTCGGT
TGTGGTGGCCAACCGGGGGGACAAGGCAACTGCTGCATCGGCGGACCCAA
CGGCATCTTGTCCAACGCCGGCGATTGCGCCACAACCGGAGCTGCCCCAT
GCCTCGTCGACGAGACGTGCCCAGGCGATATCGCCGGCATCCTGTCCGGT
GATGGCACCGTGTGCTGCGACCTCGAGTGCGGGCAGTGTGGAGGGCTCGG
TTGTGGTGGCCAACCGGGGGGACAAGGCAACTGCTGCATCGGCGGACCCA
ACGGCATCTTGTCCAACGCCGGCGATTGCGCCACAACCGGAGCTGCCCCA
TGCCTCGTCGGCGAGACGTGCGACGGAACCATTCCCGGCATCCTGTCCGG
TGACGGCAGCGCGTGCTGCGAGCTTGAGTGCGGGCAGTGCGGAGGCGTCC
AGTGCCAGTTTCTTCCCGGGGGTCCAGGCAGCTGTTGCATCGGCGGAGTC
AACGGCGCGAGACGTGCGACGGAACCATTCCCGGCATCCTGTCCGGTGAC
GGCAGCGCGTGCTGCGAGCTTGAGTGCGGGCAGTGCGGAGGCGTCCAGTG
CCAGTTTCTTCCCGGGGGTCCAGGCAGCTGTTGCATCGGCGGAGTCAACG
GC
back to top