mRNA_L-elsbetiae_contig8489.17506.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8489.17506.1
Unique NamemRNA_L-elsbetiae_contig8489.17506.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8489.17506.1 vs. uniprot
Match: D7FLQ1_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ1_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.600e-34
Identity = 74/121 (61.16%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:   40 SLAPFQGSLLAELNTTALEFGVAFTFRLSAGNIFGGADEATATVTRSDDDVPSVVVLGSSSRAVKRSRSTSLRMAATPPACGESQLLAFAWSEAGAAGFDAIGTEVLQGLEQRDATVLTLP 402
            +LA F+GSL+AEL+  ALE GV F F L+ GN  G  +  T  VTR  +DVPSV VLGS++R VKRSR TSLR+ AT PACGE QLL  +WSE G A +D IGTEV QGL QRD TV+T P
Sbjct:  174 ALALFEGSLVAELDAAALEPGVKFMFALTVGNFLGDTNGVTVAVTRIAEDVPSVAVLGSATRVVKRSRPTSLRITATSPACGERQLLNRSWSEVGGAAYDEIGTEVFQGLAQRDPTVITFP 294
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BLAST of mRNA_L-elsbetiae_contig8489.17506.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.420e-33
Identity = 72/121 (59.50%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:   40 SLAPFQGSLLAELNTTALEFGVAFTFRLSAGNIFGGADEATATVTRSDDDVPSVVVLGSSSRAVKRSRSTSLRMAATPPACGESQLLAFAWSEAGAAGFDAIGTEVLQGLEQRDATVLTLP 402
            +LA F+GSL+AEL+  ALE GV F F L+ GN  G  +  T  VTR  +D+PSV VLGS++R VKRSR TSLR+ AT PACGE Q L  +WSE G AG+D IGTEV QGL QRD T +T P
Sbjct:  466 ALALFEGSLVAELDAAALEPGVKFMFALTVGNFLGDTNGVTVAVTRIAEDIPSVAVLGSATRVVKRSRPTSLRITATSPACGERQQLNHSWSEVGGAGYDEIGTEVFQGLAQRDPTAITFP 586
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BLAST of mRNA_L-elsbetiae_contig8489.17506.1 vs. uniprot
Match: D7G3A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A0_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.250e-29
Identity = 67/128 (52.34%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:   19 AAAAARDSLAPFQGSLLAELNTTALEFGVAFTFRLSAGNIFGGADEATATVTRSDDDVPSVVVLGSSSRAVKRSRSTSLRMAATPPACGESQLLAFAWSEAGAAGFDAIGTEVLQGLEQRDATVLTLP 402
            A  A   +L PFQGSL A LN+T+LE  V F   L   N  G  D A  TVTR ++DVPSVVV+G +++   RSR TSLRMAATPPACG++  L+F+W+E+G  G+DA+GT V++ L   D T LT+P
Sbjct:   93 AVVAVAGALEPFQGSLHATLNSTSLEPLVEFEISLIVENFLGSFDTAAVTVTRVNEDVPSVVVVGPATKTAIRSRVTSLRMAATPPACGDASSLSFSWTESGTDGYDALGTSVMEDLVGNDPTALTIP 220
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BLAST of mRNA_L-elsbetiae_contig8489.17506.1 vs. uniprot
Match: D7G398_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G398_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.350e-28
Identity = 68/133 (51.13%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:   10 ADDAAA--AARDSLAPFQGSLLAELNTTALEFGVAFTFRLSAGNIFGGADEATATVTRSDDDVPSVVVLGSSSRAVKRSRSTSLRMAATPPACGESQLLAFAWSEAGAAGFDAIGTEVLQGLEQRDATVLTLP 402
            A D+AA  A   +L PFQGSL A +N+T+LE  V F   L   N  G  D A  TVTR ++D PSVVV+G +++   RSR TSLRMAATPPACG++  L+F W+E+G  G+DA+GT V++ L   D T LT+P
Sbjct:  469 ASDSAAVTAVAGALKPFQGSLYATVNSTSLEPLVEFKISLIVENFLGSVDAAAVTVTRVNEDAPSVVVVGPAAKTAIRSRPTSLRMAATPPACGDASSLSFTWTESGMDGYDALGTSVMENLVGNDPTALTIP 601
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BLAST of mRNA_L-elsbetiae_contig8489.17506.1 vs. uniprot
Match: A0A6H5JHJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.910e-24
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:  187 DVPSVVVLGSSSRAVKRSRSTSLRMAATPPACGESQLLAFAWSEAGAAGFDAIGTEVLQGLEQRDATVLTLP 402
            DVPSV VLGS++R VKRSR TSLR+ AT PACGE QLL ++WSE G AG+D IGTEV QGL QRD TV+T P
Sbjct:    7 DVPSVAVLGSATRVVKRSRPTSLRVTATSPACGERQLLNYSWSEVGGAGYDEIGTEVFQGLAQRDPTVITFP 78
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BLAST of mRNA_L-elsbetiae_contig8489.17506.1 vs. uniprot
Match: D7G3A1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A1_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 3.720e-17
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:   19 AAAAARDSLAPFQGSLLAELNTTALEFGVAFTFRLSAGNIFGGADEATATVTRSDDDVPSVVVLGSSSRAVKRSRSTSLRMAATPPACGES 291
            A AA   +L PFQGSL A LN+T+LE  V F   L   N  G  D A  TVTR ++D PSVVV+G +++   RSR TSLRMAATPPACG S
Sbjct:   93 AVAAVAGALQPFQGSLYATLNSTSLEPLVEFKISLIVENFLGAVDAAAVTVTRVNEDAPSVVVVGPATKTAIRSRPTSLRMAATPPACGTS 183
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8489.17506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FLQ1_ECTSI2.600e-3461.16REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4X3_ECTSI1.420e-3359.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3A0_ECTSI5.250e-2952.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G398_ECTSI1.350e-2851.13GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHJ2_9PHAE1.910e-2470.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3A1_ECTSI3.720e-1756.04GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8489contigL-elsbetiae_contig8489:2682..4454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue4.6e-30
Seed eggNOG ortholog2880.D7FLQ1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size405
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8489.17506.1prot_L-elsbetiae_contig8489.17506.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8489 2682..4452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816930.6798544-CDS-L-elsbetiae_contig8489:2681..28601622816930.6798544-CDS-L-elsbetiae_contig8489:2681..2860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8489 2682..2860 +
1691683920.9326038-CDS-L-elsbetiae_contig8489:2681..28601691683920.9326038-CDS-L-elsbetiae_contig8489:2681..2860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8489 2682..2860 +
1622816930.6931906-CDS-L-elsbetiae_contig8489:3223..33271622816930.6931906-CDS-L-elsbetiae_contig8489:3223..3327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8489 3224..3327 +
1691683920.9468305-CDS-L-elsbetiae_contig8489:3223..33271691683920.9468305-CDS-L-elsbetiae_contig8489:3223..3327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8489 3224..3327 +
1622816930.7044156-CDS-L-elsbetiae_contig8489:3726..38061622816930.7044156-CDS-L-elsbetiae_contig8489:3726..3806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8489 3727..3806 +
1691683920.9566643-CDS-L-elsbetiae_contig8489:3726..38061691683920.9566643-CDS-L-elsbetiae_contig8489:3726..3806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8489 3727..3806 +
1622816930.7164316-CDS-L-elsbetiae_contig8489:4413..44521622816930.7164316-CDS-L-elsbetiae_contig8489:4413..4452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8489 4414..4452 +
1691683920.9668198-CDS-L-elsbetiae_contig8489:4413..44521691683920.9668198-CDS-L-elsbetiae_contig8489:4413..4452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8489 4414..4452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8489.17506.1

>prot_L-elsbetiae_contig8489.17506.1 ID=prot_L-elsbetiae_contig8489.17506.1|Name=mRNA_L-elsbetiae_contig8489.17506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
DAGADDAAAAARDSLAPFQGSLLAELNTTALEFGVAFTFRLSAGNIFGGA
DEATATVTRSDDDVPSVVVLGSSSRAVKRSRSTSLRMAATPPACGESQLL
AFAWSEAGAAGFDAIGTEVLQGLEQRDATVLTLP
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mRNA from alignment at L-elsbetiae_contig8489:2682..4454+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8489.17506.1 ID=mRNA_L-elsbetiae_contig8489.17506.1|Name=mRNA_L-elsbetiae_contig8489.17506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1773bp|location=Sequence derived from alignment at L-elsbetiae_contig8489:2682..4454+ (Laminarionema elsbetiae ELsaHSoW15)
GACGCAGGCGCCGACGACGCAGCAGCCGCCGCCAGAGACTCTCTGGCCCC
CTTCCAGGGCTCCCTGCTCGCCGAGCTGAACACCACGGCGCTGGAGTTCG
GAGTGGCGTTCACCTTCCGGCTTTCGGCGGGAAATATTTTCGGGGGAGCG
GACGAGGCTACCGCCACGGTCACTAGAAGGTTCGGAGTTGCATGGCCATA
GGAACACAAAATGCCGGAGAGCACGTTAGCCGCGAAATGTGTCCAGGGGC
CTCGAGGGAAGACAAGTCCGTTAGGCACGATGGAGAGCGTGGTACCTTGC
GAACGAAGCCAGCTTTAGACGTACTTTGTGGCGCTGACCAATGCACCTTG
GATACCCTAGCTGCTGCCGATCGATGCCCCCTCCTGCCTCTTCATCGCCA
TCCACGCCGACCAAACATCTTAACTTCGGGTTCTCCACATGCTGTTTCGT
GGCCAGGACGCAAGCAAACCCGCTATTTAGCACCACCACTACTGATGTGA
TCCTAGCCCTGTTACCTTTGTCCTTTAACCCTGACCCCGCAGTGACGATG
ACGTGCCTTCAGTCGTTGTTCTTGGATCGTCATCGAGGGCGGTAAAAAGG
TCTCGATCGACCTCTCTCCGGATGGCAGCCACCCCGCCGGCCTGCGGTAA
GGAAAAAGCTGCAGAATGCGATCCGCGAGGCTAGATGCATTTGTATCGCC
CGCAGGACGCGTGCTGCCGGCCATAACGTCATTCTCGGCCGCGCGCCCCC
CTAGGGTGCGGAGCCTGCGCTATGCTAGGCCATTGCCTGGTTGTCTCTAA
CGCCCCCTGTGGCCACAAAGATTGATGGCTATTCGAAGTTGTACATACCA
TATGAACTTGGAGCGAGATTGCGTTGAAAGCGCGTTAGGTGACGTGACGT
GAAACCTGGGCGCCGGAGGTAGTCACCTACAAAGCACCGCGCCAAATATA
CAGCTGTAAACATATACACGAAGTATGCACATAAATTTCATTTGTTCCAT
CTCTTCTCTCGCGTCGTCCTGTCGCCGATCTTGAACGCTTTTCAGGCGAA
AGTCAGCTGCTCGCCTTCGCCTGGTCAGAGGCTGGAGCGGCTGGTTTCGA
CGCGATCGGCACGGAGGTGTTGCAGGTATGTACATGAGCGTTTGTGTTGT
TTTCCGGCCCCCCTCCTCTGGCCGCCATTCTTGGTGCTTCGGGTGCTATC
TCCATATGTTGGGCTTGACCGCTCGACACGTGATGACGTCACCGATGTCG
GCTGTATTCCCCGTTCCCGCCGCCACAGCGTCTCCAAAACCGGAGCATTG
AGCGATTAATGATGTTCGTTGGCAGCATCTTGAACCAGCGTTTCGGTAGC
AAGGAGGACGACGAGTTCCGGCAGCGGCGCGATCGATAACCACGCAGTCA
ACAACCATTTTACTTTGGTGTTCTGTGATAGAGCGTACAGTAGAAGCTCA
AGGAGCGACGACGATGACGCGTGTACAGTGTGTCTGGTGCATTCCCTTGA
TTTGCCTCGTTGCACGTGTAAAACAACGATACCAATACGGTCTGCACTAG
ACGTGGCCACAATGACCCCCCCGGTAAGTGCTGCCTCACGCCTCAAGACA
TCGAGTAGCGCCTCGCGGAGATCCGCATGGTAAACGACGATACATCAGAG
AAGCTAGCGAGAAAGGGCAACGAACTCAGCAACGCTGAACGAAGTACCTG
GTGGACCTTTCCACGGCCTCGAATGCTGATAGGGTTTGGAGCAGCGGGAC
GCGACTGTACTGACCCTCCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8489:2682..4454+

>mRNA_L-elsbetiae_contig8489.17506.1 ID=mRNA_L-elsbetiae_contig8489.17506.1|Name=mRNA_L-elsbetiae_contig8489.17506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig8489:2682..4454+ (Laminarionema elsbetiae ELsaHSoW15)
GACGCAGGCGCCGACGACGCAGCAGCCGCCGCCAGAGACTCTCTGGCCCC
CTTCCAGGGCTCCCTGCTCGCCGAGCTGAACACCACGGCGCTGGAGTTCG
GAGTGGCGTTCACCTTCCGGCTTTCGGCGGGAAATATTTTCGGGGGAGCG
GACGAGGCTACCGCCACGGTCACTAGAAGGACGCAGGCGCCGACGACGCA
GCAGCCGCCGCCAGAGACTCTCTGGCCCCCTTCCAGGGCTCCCTGCTCGC
CGAGCTGAACACCACGGCGCTGGAGTTCGGAGTGGCGTTCACCTTCCGGC
TTTCGGCGGGAAATATTTTCGGGGGAGCGGACGAGGCTACCGCCACGGTC
ACTAGAAGTGACGATGACGTGCCTTCAGTCGTTGTTCTTGGATCGTCATC
GAGGGCGGTAAAAAGGTCTCGATCGACCTCTCTCCGGATGGCAGCCACCC
CGCCGGCCTGCGTGACGATGACGTGCCTTCAGTCGTTGTTCTTGGATCGT
CATCGAGGGCGGTAAAAAGGTCTCGATCGACCTCTCTCCGGATGGCAGCC
ACCCCGCCGGCCTGCGGCGAAAGTCAGCTGCTCGCCTTCGCCTGGTCAGA
GGCTGGAGCGGCTGGTTTCGACGCGATCGGCACGGAGGTGTTGCAGGCGA
AAGTCAGCTGCTCGCCTTCGCCTGGTCAGAGGCTGGAGCGGCTGGTTTCG
ACGCGATCGGCACGGAGGTGTTGCAGGGTTTGGAGCAGCGGGACGCGACT
GTACTGACCCTCCCGGGTTTGGAGCAGCGGGACGCGACTGTACTGACCCT
CCCG
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