mRNA_L-elsbetiae_contig8484.17502.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8484.17502.1
Unique NamemRNA_L-elsbetiae_contig8484.17502.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8484.17502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8484contigL-elsbetiae_contig8484:7218..7880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size663
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8484.17502.1prot_L-elsbetiae_contig8484.17502.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8484 7396..7731 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816930.4317594-UTR-L-elsbetiae_contig8484:7217..73951622816930.4317594-UTR-L-elsbetiae_contig8484:7217..7395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8484 7218..7395 +
1691683920.7656279-UTR-L-elsbetiae_contig8484:7217..73951691683920.7656279-UTR-L-elsbetiae_contig8484:7217..7395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8484 7218..7395 +
1622816930.4535542-UTR-L-elsbetiae_contig8484:7731..78801622816930.4535542-UTR-L-elsbetiae_contig8484:7731..7880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8484 7732..7880 +
1691683920.7936916-UTR-L-elsbetiae_contig8484:7731..78801691683920.7936916-UTR-L-elsbetiae_contig8484:7731..7880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8484 7732..7880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816930.443156-CDS-L-elsbetiae_contig8484:7395..77311622816930.443156-CDS-L-elsbetiae_contig8484:7395..7731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8484 7396..7731 +
1691683920.7806964-CDS-L-elsbetiae_contig8484:7395..77311691683920.7806964-CDS-L-elsbetiae_contig8484:7395..7731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8484 7396..7731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8484.17502.1

>prot_L-elsbetiae_contig8484.17502.1 ID=prot_L-elsbetiae_contig8484.17502.1|Name=mRNA_L-elsbetiae_contig8484.17502.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MYLIPVGGVLGRRTRTGGQRVYCCTAQTLLHKKRSDTSAGVAPERLPSLS
ARCFSVPRSVFFVVLLITPVRNEKKVQQSGGGGGARHRKPSPSTYYFISV
GLHSIPRLVLR*
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mRNA from alignment at L-elsbetiae_contig8484:7218..7880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8484.17502.1 ID=mRNA_L-elsbetiae_contig8484.17502.1|Name=mRNA_L-elsbetiae_contig8484.17502.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=663bp|location=Sequence derived from alignment at L-elsbetiae_contig8484:7218..7880+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAGGTGTACGACTGGAGTTAGAGACAAAAATAAAAAATAAAAAAACAC
AAGTAGTATGTTTGGATGGTACACACGCGCCCGGTCACACGTTAACTGAA
CTCCGAAGGAGTCTTAGTGGTTGTTGGCCTGTATGTATCTCGAGACGGTA
GGAGAGTTCAGGTGTGAGGTATGTATGTATGTATCTAATACCTGTGGGCG
GTGTTTTGGGCAGAAGGACCAGAACGGGAGGACAACGGGTGTACTGCTGT
ACCGCCCAAACGTTGCTGCACAAGAAGCGAAGCGACACTTCCGCCGGCGT
TGCCCCCGAGAGGCTTCCTTCTCTTTCAGCGCGCTGTTTTTCTGTTCCAA
GAAGCGTTTTTTTTGTTGTGCTGCTCATCACGCCTGTGCGCAATGAGAAG
AAAGTGCAGCAATCAGGGGGAGGAGGGGGAGCCAGACACCGAAAACCCTC
CCCCAGTACGTATTATTTTATTTCAGTTGGCCTACATAGTATTCCCCGTC
TTGTCTTGCGATGATGGGGTCGTGGTGGCCGGCTGTCGCGCCACGGGGCG
GATAAGCTACAGCGTTTTTACTGGGGAAAAAACAGGTAATTCGGTTGTTC
AGCAGCACCTGCCTGCCCCGCCTGCCCACCCACTGGCCGGCCGGGGATTT
TCAGGGGGATTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8484:7218..7880+

>mRNA_L-elsbetiae_contig8484.17502.1 ID=mRNA_L-elsbetiae_contig8484.17502.1|Name=mRNA_L-elsbetiae_contig8484.17502.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig8484:7218..7880+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATCTAATACCTGTGGGCGGTGTTTTGGGCAGAAGGACCAGAACGGG
AGGACAACGGGTGTACTGCTGTACCGCCCAAACGTTGCTGCACAAGAAGC
GAAGCGACACTTCCGCCGGCGTTGCCCCCGAGAGGCTTCCTTCTCTTTCA
GCGCGCTGTTTTTCTGTTCCAAGAAGCGTTTTTTTTGTTGTGCTGCTCAT
CACGCCTGTGCGCAATGAGAAGAAAGTGCAGCAATCAGGGGGAGGAGGGG
GAGCCAGACACCGAAAACCCTCCCCCAGTACGTATTATTTTATTTCAGTT
GGCCTACATAGTATTCCCCGTCTTGTCTTGCGATGAATGTATCTAATACC
TGTGGGCGGTGTTTTGGGCAGAAGGACCAGAACGGGAGGACAACGGGTGT
ACTGCTGTACCGCCCAAACGTTGCTGCACAAGAAGCGAAGCGACACTTCC
GCCGGCGTTGCCCCCGAGAGGCTTCCTTCTCTTTCAGCGCGCTGTTTTTC
TGTTCCAAGAAGCGTTTTTTTTGTTGTGCTGCTCATCACGCCTGTGCGCA
ATGAGAAGAAAGTGCAGCAATCAGGGGGAGGAGGGGGAGCCAGACACCGA
AAACCCTCCCCCAGTACGTATTATTTTATTTCAGTTGGCCTACATAGTAT
TCCCCGTCTTGTCTTGCGATGA
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