mRNA_L-elsbetiae_contig8476.17490.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8476.17490.1
Unique NamemRNA_L-elsbetiae_contig8476.17490.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: A0A6H5JA57_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA57_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.000e-37
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 LKPPGASSVDIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQQV 225
            LKPP +SSVDIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDG+QV
Sbjct:   96 LKPPESSSVDIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGKQV 170          
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: A0A7R9UAM3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAM3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.730e-27
Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 1
Query:   13 GASSVDIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQQV 225
            G    D+R+AMIGNVDSGKSTLIGVL+S+GLDDGRG+ARSLVL+HRHEQ+NGRTSAVT+E+MGY +DG+QV
Sbjct:  145 GVDDSDVRVAMIGNVDSGKSTLIGVLTSAGLDDGRGSARSLVLKHRHEQDNGRTSAVTVEVMGY-RDGEQV 214          
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: A0A7S2BKI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKI3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.130e-26
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   28 DIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQQV 225
            D+R+AMIGNVDSGKSTLIGVL+S+ LDDGRG ARSLVLRHRHEQENGRTSAVT+E+MGY KDG+QV
Sbjct:   83 DVRVAMIGNVDSGKSTLIGVLTSACLDDGRGLARSLVLRHRHEQENGRTSAVTVELMGY-KDGEQV 147          
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: A0A7S2WNE9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNE9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.110e-26
Identity = 54/71 (76.06%), Postives = 66/71 (92.96%), Query Frame = 1
Query:   13 GASSVDIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQQV 225
            GA S ++R+AMIGNVDSGKSTLIGVL+S+ LDDGRG ARS++LRHRHEQENGRTSAV++E+MGY +DG+QV
Sbjct:   35 GAESGEVRVAMIGNVDSGKSTLIGVLTSASLDDGRGLARSVMLRHRHEQENGRTSAVSVELMGY-RDGEQV 104          
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: A0A7S3HE85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE85_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.860e-25
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1
Query:   28 DIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQQV 225
            D RIAMIGNVDSGKSTLIG+L+++ LDDGRGAARSLVL+HRHEQENGRTSAVT+EIMGY K+G QV
Sbjct:   64 DTRIAMIGNVDSGKSTLIGILTNATLDDGRGAARSLVLKHRHEQENGRTSAVTVEIMGY-KEGTQV 128          
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: W7TYD2_9STRA (Gtp-binding protein 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYD2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.200e-25
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    7 PPGASSVDIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQQV 225
            P      D+R+AMIGNVD+GKSTLIGVL+++ LDDGRG+ARSLVL+HRHEQENGRTSAVT+E++GY   G+QV
Sbjct:   80 PSAVDDDDVRVAMIGNVDAGKSTLIGVLTNAILDDGRGSARSLVLKHRHEQENGRTSAVTIELLGYKGTGEQV 152          
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: A0A6V2X5T2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2X5T2_HETAK)

HSP 1 Score: 102 bits (255), Expect = 5.430e-24
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 1
Query:   28 DIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQQV 225
            D+R+AMIGNVDSGKSTLIGVL++  LDDGRGAARS VL+HRHEQENGRTSAV++E+MGY +  +QV
Sbjct:   56 DVRVAMIGNVDSGKSTLIGVLTNCTLDDGRGAARSSVLKHRHEQENGRTSAVSVEVMGYNEKNEQV 121          
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: F0Y7C9_AURAN (Tr-type G domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7C9_AURAN)

HSP 1 Score: 100 bits (250), Expect = 1.730e-23
Identity = 48/64 (75.00%), Postives = 58/64 (90.62%), Query Frame = 1
Query:   28 DIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQ 219
            D+R+AMIGNVDSGKSTLIGVL++ GLDDGRG ARSLVLRH+HEQENGRTS V++E+MG+  + Q
Sbjct:    4 DVRVAMIGNVDSGKSTLIGVLTAGGLDDGRGGARSLVLRHKHEQENGRTSTVSVELMGFQGERQ 67          
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: A0A7S3K4J1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4J1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.250e-22
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1
Query:   28 DIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQQV 225
            DIR+AMIGNVDSGKS+LIGVL++  LDDGRG ARSLVL+H+HEQ NGRTSAVT+E+MG+ ++ Q V
Sbjct:   89 DIRVAMIGNVDSGKSSLIGVLTNGSLDDGRGLARSLVLKHKHEQSNGRTSAVTVELMGFKEEHQIV 154          
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Match: A0A836C8C3_9STRA (Elongation factor Tu GTP binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.430e-22
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1
Query:   43 MIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGQQV 225
            MIGNVDSGKSTLIGVL +   DDGRG+ARSLVL+HRHEQENGRTSAVT EIMGY  +G QV
Sbjct:    1 MIGNVDSGKSTLIGVLCNRCTDDGRGSARSLVLKHRHEQENGRTSAVTTEIMGYTAEGDQV 61          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8476.17490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA57_9PHAE3.000e-3796.00Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A7R9UAM3_9STRA2.730e-2777.46Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2BKI3_9STRA2.130e-2684.85Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2WNE9_9STRA6.110e-2676.06Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3HE85_9STRA1.860e-2583.33Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TYD2_9STRA8.200e-2569.86Gtp-binding protein 1 n=2 Tax=Monodopsidaceae TaxI... [more]
A0A6V2X5T2_HETAK5.430e-2475.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y7C9_AURAN1.730e-2375.00Tr-type G domain-containing protein (Fragment) n=1... [more]
A0A7S3K4J1_9STRA2.250e-2272.73Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836C8C3_9STRA9.430e-2280.33Elongation factor Tu GTP binding domain-containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8476contigL-elsbetiae_contig8476:7929..8458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue5.2e-31
Seed eggNOG ortholog2880.D7FIQ8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP metabolic process
EggNOG OGsCOG5258@1,KOG0463@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionGTPBP1, EF1alpha-like GTPase
Ec32 orthologEc-27_000690.1
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816929.4490745-CDS-L-elsbetiae_contig8476:7928..79901622816929.4490745-CDS-L-elsbetiae_contig8476:7928..7990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8476 7929..7990 +
1691683920.0140183-CDS-L-elsbetiae_contig8476:7928..79901691683920.0140183-CDS-L-elsbetiae_contig8476:7928..7990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8476 7929..7990 +
1622816929.4637141-CDS-L-elsbetiae_contig8476:8295..84581622816929.4637141-CDS-L-elsbetiae_contig8476:8295..8458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8476 8296..8458 +
1691683920.0265172-CDS-L-elsbetiae_contig8476:8295..84581691683920.0265172-CDS-L-elsbetiae_contig8476:8295..8458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8476 8296..8458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8476.17490.1prot_L-elsbetiae_contig8476.17490.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8476 7929..8458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8476.17490.1

>prot_L-elsbetiae_contig8476.17490.1 ID=prot_L-elsbetiae_contig8476.17490.1|Name=mRNA_L-elsbetiae_contig8476.17490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
LKPPGASSVDIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHR
HEQENGRTSAVTMEIMGYAKDGQQV
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mRNA from alignment at L-elsbetiae_contig8476:7929..8458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8476.17490.1 ID=mRNA_L-elsbetiae_contig8476.17490.1|Name=mRNA_L-elsbetiae_contig8476.17490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=530bp|location=Sequence derived from alignment at L-elsbetiae_contig8476:7929..8458+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAAGCCACCAGGGGCCAGCAGCGTCGACATTCGTATCGCCATGATCGG CAACGTGGACAGGTGCTTGTGCGCCATTCCGTTTTCTTGATATTTTTGTC AAGTCCGAGACCGCGTTTTTGAGGCATGTTTAGTTTCAACAGAGGGGCGA AGGAAACCCACACACATATGTATGTGGATCTTTATATTAGTCAATGGTGG AGCATCACATGTGCTTCAATACACACATGCATGTACGGCGGTGTTTTTGC AGCCCATCGTATCTCGCAAGCAGCGCGTCAAATCTCGTTCTTTCCCCGCC TATCGGGTCGGCCTTTCGCGCGCTGCCTCTATCCGCTGCACCTGTCATAT ACCTACATACATATCAGCGGGAAGTCGACCTTGATCGGGGTTCTGTCTAG CTCGGGCCTGGACGATGGCCGCGGCGCGGCGCGCAGCCTGGTCCTTCGCC ACCGCCACGAGCAGGAGAACGGCCGCACGTCGGCCGTGACCATGGAGATC ATGGGCTACGCCAAGGACGGCCAGCAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8476:7929..8458+

>mRNA_L-elsbetiae_contig8476.17490.1 ID=mRNA_L-elsbetiae_contig8476.17490.1|Name=mRNA_L-elsbetiae_contig8476.17490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig8476:7929..8458+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAAGCCACCAGGGGCCAGCAGCGTCGACATTCGTATCGCCATGATCGG
CAACGTGGACAGCTCAAGCCACCAGGGGCCAGCAGCGTCGACATTCGTAT
CGCCATGATCGGCAACGTGGACAGCGGGAAGTCGACCTTGATCGGGGTTC
TGTCTAGCTCGGGCCTGGACGATGGCCGCGGCGCGGCGCGCAGCCTGGTC
CTTCGCCACCGCCACGAGCAGGAGAACGGCCGCACGTCGGCCGTGACCAT
GGAGATCATGGGCTACGCCAAGGACGGCCAGCAGGTGCGGGAAGTCGACC
TTGATCGGGGTTCTGTCTAGCTCGGGCCTGGACGATGGCCGCGGCGCGGC
GCGCAGCCTGGTCCTTCGCCACCGCCACGAGCAGGAGAACGGCCGCACGT
CGGCCGTGACCATGGAGATCATGGGCTACGCCAAGGACGGCCAGCAGGTG
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