mRNA_L-elsbetiae_contig8475.17488.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8475.17488.1
Unique NamemRNA_L-elsbetiae_contig8475.17488.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8475.17488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8475contigL-elsbetiae_contig8475:8412..8702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size284
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8475.17488.1prot_L-elsbetiae_contig8475.17488.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8475 8442..8702 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816929.1721525-UTR-L-elsbetiae_contig8475:8411..84411622816929.1721525-UTR-L-elsbetiae_contig8475:8411..8441Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8475 8412..8441 -
1691683919.8156984-UTR-L-elsbetiae_contig8475:8411..84411691683919.8156984-UTR-L-elsbetiae_contig8475:8411..8441Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8475 8412..8441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816929.1819847-CDS-L-elsbetiae_contig8475:8441..85611622816929.1819847-CDS-L-elsbetiae_contig8475:8441..8561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8475 8442..8561 -
1691683919.825205-CDS-L-elsbetiae_contig8475:8441..85611691683919.825205-CDS-L-elsbetiae_contig8475:8441..8561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8475 8442..8561 -
1622816929.1917396-CDS-L-elsbetiae_contig8475:8570..87021622816929.1917396-CDS-L-elsbetiae_contig8475:8570..8702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8475 8571..8702 -
1691683919.8342907-CDS-L-elsbetiae_contig8475:8570..87021691683919.8342907-CDS-L-elsbetiae_contig8475:8570..8702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8475 8571..8702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8475.17488.1

>prot_L-elsbetiae_contig8475.17488.1 ID=prot_L-elsbetiae_contig8475.17488.1|Name=mRNA_L-elsbetiae_contig8475.17488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
RYRSDVTAALLSTATAPTGCFCVGTPPLINTLRLCQHRAVQVNTICAPEP
CVSCCCSDVFYFNCKSSWCHTDVRFGPLIPTAC*
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mRNA from alignment at L-elsbetiae_contig8475:8412..8702-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8475.17488.1 ID=mRNA_L-elsbetiae_contig8475.17488.1|Name=mRNA_L-elsbetiae_contig8475.17488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig8475:8412..8702- (Laminarionema elsbetiae ELsaHSoW15)
CGTTATAGATCAGACGTAACAGCTGCCCTCCTAAGCACAGCAACAGCACC
AACCGGGTGCTTCTGTGTGGGCACTCCGCCCTTGATCAATACGCTCCGCC
TTTGTCAACACAGAGCTGTGCAGGTCAACACAGCTGCGCAGATCTGTGCC
CCCGAGCCGTGTGTTTCCTGCTGCTGCTCTGACGTGTTTTACTTCAACTG
CAAGAGCAGCTGGTGTCATACTGACGTTCGTTTTGGGCCATTGATACCGA
CAGCCTGCTGATGACATACCGGAACAGTAGTTTTCCCGTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8475:8412..8702-

>mRNA_L-elsbetiae_contig8475.17488.1 ID=mRNA_L-elsbetiae_contig8475.17488.1|Name=mRNA_L-elsbetiae_contig8475.17488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig8475:8412..8702- (Laminarionema elsbetiae ELsaHSoW15)
CGTTATAGATCAGACGTAACAGCTGCCCTCCTAAGCACAGCAACAGCACC
AACCGGGTGCTTCTGTGTGGGCACTCCGCCCTTGATCAATACGCTCCGCC
TTTGTCAACACAGAGCTGTGCAGGTCAACACACGTTATAGATCAGACGTA
ACAGCTGCCCTCCTAAGCACAGCAACAGCACCAACCGGGTGCTTCTGTGT
GGGCACTCCGCCCTTGATCAATACGCTCCGCCTTTGTCAACACAGAGCTG
TGCAGGTCAACACAATCTGTGCCCCCGAGCCGTGTGTTTCCTGCTGCTGC
TCTGACGTGTTTTACTTCAACTGCAAGAGCAGCTGGTGTCATACTGACGT
TCGTTTTGGGCCATTGATACCGACAGCCTGCTGAATCTGTGCCCCCGAGC
CGTGTGTTTCCTGCTGCTGCTCTGACGTGTTTTACTTCAACTGCAAGAGC
AGCTGGTGTCATACTGACGTTCGTTTTGGGCCATTGATACCGACAGCCTG
CTGA
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