mRNA_L-elsbetiae_contig8470.17482.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8470.17482.1
Unique NamemRNA_L-elsbetiae_contig8470.17482.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8470.17482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8470contigL-elsbetiae_contig8470:2890..3348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816928.8130555-CDS-L-elsbetiae_contig8470:2889..33481622816928.8130555-CDS-L-elsbetiae_contig8470:2889..3348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8470 2890..3348 +
1691683919.527194-CDS-L-elsbetiae_contig8470:2889..33481691683919.527194-CDS-L-elsbetiae_contig8470:2889..3348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8470 2890..3348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8470.17482.1prot_L-elsbetiae_contig8470.17482.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8470 2890..3348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8470.17482.1

>prot_L-elsbetiae_contig8470.17482.1 ID=prot_L-elsbetiae_contig8470.17482.1|Name=mRNA_L-elsbetiae_contig8470.17482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
LSCVVPIRSDPHTKTTHQKQTHHSHSAITIFLHTIHHHHHHLTTHTMRAG
AIKLNLPAPTLKRSATLLLARFYPTPPPGSLEQTTHPNSGQHESMKAGKR
RARGGAEEAPAQRYASSTFVSFPTTTTTPRQHNTPAVGITRSSFFCVNTQ
RTF
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mRNA from alignment at L-elsbetiae_contig8470:2890..3348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8470.17482.1 ID=mRNA_L-elsbetiae_contig8470.17482.1|Name=mRNA_L-elsbetiae_contig8470.17482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=459bp|location=Sequence derived from alignment at L-elsbetiae_contig8470:2890..3348+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTCTTGCGTAGTCCCCATCAGATCAGACCCCCACACCAAAACAACTCA
CCAAAAACAAACCCACCACTCCCACTCTGCCATCACCATCTTCCTTCACA
CCATTCACCATCACCATCATCATCTCACTACGCACACCATGAGAGCAGGA
GCGATCAAACTTAATTTACCAGCCCCCACCCTAAAGAGGTCGGCTACACT
ACTACTCGCGCGCTTCTACCCCACACCACCACCCGGATCGCTTGAACAAA
CAACACATCCCAATTCTGGCCAGCACGAGAGCATGAAAGCAGGCAAACGC
AGGGCGCGTGGTGGCGCAGAAGAGGCCCCAGCCCAGCGGTATGCGTCATC
TACATTCGTTTCTTTCCCCACAACTACAACAACCCCTCGCCAACACAACA
CGCCAGCAGTCGGAATCACGCGATCCAGTTTTTTTTGCGTAAATACGCAA
AGAACCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8470:2890..3348+

>mRNA_L-elsbetiae_contig8470.17482.1 ID=mRNA_L-elsbetiae_contig8470.17482.1|Name=mRNA_L-elsbetiae_contig8470.17482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig8470:2890..3348+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTCTTGCGTAGTCCCCATCAGATCAGACCCCCACACCAAAACAACTCA
CCAAAAACAAACCCACCACTCCCACTCTGCCATCACCATCTTCCTTCACA
CCATTCACCATCACCATCATCATCTCACTACGCACACCATGAGAGCAGGA
GCGATCAAACTTAATTTACCAGCCCCCACCCTAAAGAGGTCGGCTACACT
ACTACTCGCGCGCTTCTACCCCACACCACCACCCGGATCGCTTGAACAAA
CAACACATCCCAATTCTGGCCAGCACGAGAGCATGAAAGCAGGCAAACGC
AGGGCGCGTGGTGGCGCAGAAGAGGCCCCAGCCCAGCGGTATGCGTCATC
TACATTCGTTTCTTTCCCCACAACTACAACAACCCCTCGCCAACACAACA
CGCCAGCAGTCGGAATCACGCGATCCAGTTTTTTTTGCGTAAATACGCAA
AGAACCTTCCTGTCTTGCGTAGTCCCCATCAGATCAGACCCCCACACCAA
AACAACTCACCAAAAACAAACCCACCACTCCCACTCTGCCATCACCATCT
TCCTTCACACCATTCACCATCACCATCATCATCTCACTACGCACACCATG
AGAGCAGGAGCGATCAAACTTAATTTACCAGCCCCCACCCTAAAGAGGTC
GGCTACACTACTACTCGCGCGCTTCTACCCCACACCACCACCCGGATCGC
TTGAACAAACAACACATCCCAATTCTGGCCAGCACGAGAGCATGAAAGCA
GGCAAACGCAGGGCGCGTGGTGGCGCAGAAGAGGCCCCAGCCCAGCGGTA
TGCGTCATCTACATTCGTTTCTTTCCCCACAACTACAACAACCCCTCGCC
AACACAACACGCCAGCAGTCGGAATCACGCGATCCAGTTTTTTTTGCGTA
AATACGCAAAGAACCTTC
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