mRNA_L-elsbetiae_contig847.17481.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig847.17481.1
Unique NamemRNA_L-elsbetiae_contig847.17481.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig847.17481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig847contigL-elsbetiae_contig847:28754..29192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816928.5314808-CDS-L-elsbetiae_contig847:28753..291131622816928.5314808-CDS-L-elsbetiae_contig847:28753..29113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig847 28754..29113 +
1691683919.2979178-CDS-L-elsbetiae_contig847:28753..291131691683919.2979178-CDS-L-elsbetiae_contig847:28753..29113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig847 28754..29113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816928.5427327-UTR-L-elsbetiae_contig847:29113..291921622816928.5427327-UTR-L-elsbetiae_contig847:29113..29192Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig847 29114..29192 +
1691683919.3079176-UTR-L-elsbetiae_contig847:29113..291921691683919.3079176-UTR-L-elsbetiae_contig847:29113..29192Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig847 29114..29192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig847.17481.1prot_L-elsbetiae_contig847.17481.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig847 28754..29113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig847.17481.1

>prot_L-elsbetiae_contig847.17481.1 ID=prot_L-elsbetiae_contig847.17481.1|Name=mRNA_L-elsbetiae_contig847.17481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
FDQPIVGVSWPASLVRLEFGDAFNQPIAGVVWPASLQELEFGGLRASFDQ
PIVGVSWPVSLVKLSFGDSFNQPIAGVVWPASLQELGFGCNHPKFDQPIV
GVEWPAPLRRVTRGRVILL*
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mRNA from alignment at L-elsbetiae_contig847:28754..29192+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig847.17481.1 ID=mRNA_L-elsbetiae_contig847.17481.1|Name=mRNA_L-elsbetiae_contig847.17481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=439bp|location=Sequence derived from alignment at L-elsbetiae_contig847:28754..29192+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGATCAGCCCATCGTCGGGGTTTCGTGGCCGGCATCTCTCGTGAGGCT
AGAGTTCGGGGATGCCTTCAATCAGCCTATTGCCGGAGTGGTGTGGCCGG
CATCCCTCCAGGAGCTGGAGTTCGGGGGGCTCCGGGCGAGCTTTGATCAG
CCCATCGTCGGGGTTTCGTGGCCGGTATCTCTCGTCAAACTATCGTTCGG
GGATTCCTTCAATCAGCCTATTGCCGGAGTGGTGTGGCCGGCATCCCTGC
AGGAGCTAGGGTTTGGGTGTAACCATCCAAAATTCGACCAGCCCATCGTC
GGGGTTGAGTGGCCCGCTCCCCTTCGACGTGTTACTCGTGGGAGAGTTAT
TCTACTCTGAAAGCGTTCGGGCCGGGCGACGATAGGTTTTGTGGCTATTT
AACGGTATCTACGAGGAGGGGCAGATTTGGAGGATAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig847:28754..29192+

>mRNA_L-elsbetiae_contig847.17481.1 ID=mRNA_L-elsbetiae_contig847.17481.1|Name=mRNA_L-elsbetiae_contig847.17481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig847:28754..29192+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGATCAGCCCATCGTCGGGGTTTCGTGGCCGGCATCTCTCGTGAGGCT
AGAGTTCGGGGATGCCTTCAATCAGCCTATTGCCGGAGTGGTGTGGCCGG
CATCCCTCCAGGAGCTGGAGTTCGGGGGGCTCCGGGCGAGCTTTGATCAG
CCCATCGTCGGGGTTTCGTGGCCGGTATCTCTCGTCAAACTATCGTTCGG
GGATTCCTTCAATCAGCCTATTGCCGGAGTGGTGTGGCCGGCATCCCTGC
AGGAGCTAGGGTTTGGGTGTAACCATCCAAAATTCGACCAGCCCATCGTC
GGGGTTGAGTGGCCCGCTCCCCTTCGACGTGTTACTCGTGGGAGAGTTAT
TCTACTCTGATTTGATCAGCCCATCGTCGGGGTTTCGTGGCCGGCATCTC
TCGTGAGGCTAGAGTTCGGGGATGCCTTCAATCAGCCTATTGCCGGAGTG
GTGTGGCCGGCATCCCTCCAGGAGCTGGAGTTCGGGGGGCTCCGGGCGAG
CTTTGATCAGCCCATCGTCGGGGTTTCGTGGCCGGTATCTCTCGTCAAAC
TATCGTTCGGGGATTCCTTCAATCAGCCTATTGCCGGAGTGGTGTGGCCG
GCATCCCTGCAGGAGCTAGGGTTTGGGTGTAACCATCCAAAATTCGACCA
GCCCATCGTCGGGGTTGAGTGGCCCGCTCCCCTTCGACGTGTTACTCGTG
GGAGAGTTATTCTACTCTGA
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