mRNA_L-elsbetiae_contig8464.17474.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8464.17474.1
Unique NamemRNA_L-elsbetiae_contig8464.17474.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8464.17474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8464contigL-elsbetiae_contig8464:5887..6862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816928.146392-CDS-L-elsbetiae_contig8464:5886..59511622816928.146392-CDS-L-elsbetiae_contig8464:5886..5951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8464 5887..5951 -
1691683919.0466015-CDS-L-elsbetiae_contig8464:5886..59511691683919.0466015-CDS-L-elsbetiae_contig8464:5886..5951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8464 5887..5951 -
1622816928.1598465-CDS-L-elsbetiae_contig8464:6543..68621622816928.1598465-CDS-L-elsbetiae_contig8464:6543..6862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8464 6544..6862 -
1691683919.0585208-CDS-L-elsbetiae_contig8464:6543..68621691683919.0585208-CDS-L-elsbetiae_contig8464:6543..6862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8464 6544..6862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8464.17474.1prot_L-elsbetiae_contig8464.17474.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8464 5887..6862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8464.17474.1

>prot_L-elsbetiae_contig8464.17474.1 ID=prot_L-elsbetiae_contig8464.17474.1|Name=mRNA_L-elsbetiae_contig8464.17474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
SKSDRTERGSSGASGGAGTARGDSSDERRSSRSHSPALVEIPASTSMDIK
KRAAGFGDLRPVGVKRERVGSDRMDEDEPRSCSEPDGVVKTEDMEVPYKV
EPREAAGGTKLERRKRRMIAGGQGRGS*
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mRNA from alignment at L-elsbetiae_contig8464:5887..6862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8464.17474.1 ID=mRNA_L-elsbetiae_contig8464.17474.1|Name=mRNA_L-elsbetiae_contig8464.17474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=976bp|location=Sequence derived from alignment at L-elsbetiae_contig8464:5887..6862- (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGAGTGACAGGACTGAAAGGGGTAGCTCAGGAGCAAGCGGGGGTGC
TGGCACAGCGCGCGGTGATAGCTCCGACGAGAGGAGGAGCAGCCGATCCC
ATTCGCCTGCACTGGTAGAGATTCCTGCCAGCACGAGCATGGATATCAAG
AAACGAGCCGCTGGTTTTGGGGACCTACGCCCAGTTGGAGTTAAGAGAGA
ACGCGTCGGCAGTGACAGGATGGACGAAGACGAACCCAGGTCATGTTCGG
AGCCAGACGGTGTAGTGAAGACAGAAGACATGGAGGTGCCCTACAAGGTG
GAACCTAGGGAAGCTGCAGGTAGGTGCGTTTAAGTCTGTCTTCTGCATCG
CATTTTTTCCGTGGTGGGTACTTGAAGAAGTGGGTAGATACGTAGAGAGC
ATGAGGGCTAGATGGATAGAAAAAACGGTAATAGCTGAAGGGCGAACAAG
GCTTGGCCGCGATCCTAAATACTAAATAGCTAGATTTACAACGTCGGTCT
CGACACATTCTGTATTTTGAAGGCACACAGAGCATACCATGTTGTACCGT
GAACGTGGGAGGAATGTTATGTATTGCCAGATTGTGGTCTCTAGCACCAG
TGATTTTCACCAACAATGCTTGGGCCCCTCTTTCGGCCATGTACACCAAA
CCTTGCCGGTCTGGCGCTTGTTTGAATATGCGTTATCTTCTGCCGCTAGA
GTGGGTTTCGCTCAACCTGGTTCTGCTCGGAAACAACGCGGCTGCTTGGT
AATACATGTAGCATTGATTTCCTGGGGATACAGGCATAGGCCCATTATGT
CATTGTTGCTCTGTTGCTTGAAGATATCATTCTGTTACCGGCCGCCCCCG
CTTACTCGGTTATCGTACTGCTGTGCTTCATCTTTGTAACACATCCCTTC
CGCCATCCCAGGTGGAACCAAGCTAGAGAGGAGGAAGAGGAGAATGATCG
CGGGGGGGCAAGGGCGAGGTTCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8464:5887..6862-

>mRNA_L-elsbetiae_contig8464.17474.1 ID=mRNA_L-elsbetiae_contig8464.17474.1|Name=mRNA_L-elsbetiae_contig8464.17474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig8464:5887..6862- (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGAGTGACAGGACTGAAAGGGGTAGCTCAGGAGCAAGCGGGGGTGC
TGGCACAGCGCGCGGTGATAGCTCCGACGAGAGGAGGAGCAGCCGATCCC
ATTCGCCTGCACTGGTAGAGATTCCTGCCAGCACGAGCATGGATATCAAG
AAACGAGCCGCTGGTTTTGGGGACCTACGCCCAGTTGGAGTTAAGAGAGA
ACGCGTCGGCAGTGACAGGATGGACGAAGACGAACCCAGGTCATGTTCGG
AGCCAGACGGTGTAGTGAAGACAGAAGACATGGAGGTGCCCTACAAGGTG
GAACCTAGGGAAGCTGCAGAGCAAGAGTGACAGGACTGAAAGGGGTAGCT
CAGGAGCAAGCGGGGGTGCTGGCACAGCGCGCGGTGATAGCTCCGACGAG
AGGAGGAGCAGCCGATCCCATTCGCCTGCACTGGTAGAGATTCCTGCCAG
CACGAGCATGGATATCAAGAAACGAGCCGCTGGTTTTGGGGACCTACGCC
CAGTTGGAGTTAAGAGAGAACGCGTCGGCAGTGACAGGATGGACGAAGAC
GAACCCAGGTCATGTTCGGAGCCAGACGGTGTAGTGAAGACAGAAGACAT
GGAGGTGCCCTACAAGGTGGAACCTAGGGAAGCTGCAGGTGGAACCAAGC
TAGAGAGGAGGAAGAGGAGAATGATCGCGGGGGGGCAAGGGCGAGGTTCC
TGAGTGGAACCAAGCTAGAGAGGAGGAAGAGGAGAATGATCGCGGGGGGG
CAAGGGCGAGGTTCCTGA
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