mRNA_L-elsbetiae_contig8464.17473.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8464.17473.1 vs. uniprot
Match: D7FHG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG1_ECTSI) HSP 1 Score: 311 bits (796), Expect = 3.490e-95 Identity = 154/195 (78.97%), Postives = 168/195 (86.15%), Query Frame = 3 Query: 441 RCNSSFGWYDETSAFESVDVPHSSAFYQIEDWRNLETWDGGRETRESQEEVADVEFVVPNARVTSTKTFRHG-NQRPEPYAVCIGSTRVRRVSPFAVYAEYQVLMSTKDETYKSWKRFSDFKLLAEYAKISDLRDTVTAWTDIQQTQRWFRCLEANYLKTKCRLLEKFLAQLLFEVHTPSLLMTFVGAQQPGLRR 1022 R SSFGWY+ET+AFES+D P S AF Q+ DWRNLETWDGGR E QEE A VEFVVPNA+VT+TKTFR G Q+PEPYAV IGSTRVRR+SPFAV+AEYQVL+STKD+ +KSWKR+SDFKLLAEYAKISDLRDTV AW IQQTQRWFRCLEANYLKTKC LLE+FLAQ LFEV TPSLLM FVGAQQPG R Sbjct: 120 RSTSSFGWYEETAAFESMDAPQSKAFCQVSDWRNLETWDGGR--HEPQEEAATVEFVVPNAQVTTTKTFRQGMGQQPEPYAVSIGSTRVRRLSPFAVHAEYQVLVSTKDQVHKSWKRYSDFKLLAEYAKISDLRDTVKAWAHIQQTQRWFRCLEANYLKTKCSLLERFLAQFLFEVPTPSLLMNFVGAQQPGFVR 312
BLAST of mRNA_L-elsbetiae_contig8464.17473.1 vs. uniprot
Match: A0A835ZFA2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA2_9STRA) HSP 1 Score: 166 bits (420), Expect = 7.630e-43 Identity = 96/203 (47.29%), Postives = 127/203 (62.56%), Query Frame = 3 Query: 441 RCNSSFGWYDETSAFESVDVPHSSAFYQIEDWRNLETWDGGRETRE----------------SQEEVADVEFVVPNARVTSTKTFRHGNQRPEPYAVCIGSTRVRRVSPFAVYAEYQVLMSTKDETYKSWKRFSDFKLLAEYAKISDLRDTVTAWTDIQQTQRWFRCLEANYLKTKCRLLEKFLAQLLFEVHTPSLLMTFVGA 1001 R SSFG++++ A + D S+F QI+DWR + W + + + S E V+F N +T+TF+ N + PYAV I + RV +S +A+YQV++ST+ + +K WKRFSDFKLLAEYAKISDL TV AW +IQ TQRWFRCLEANYL+TKC LEKF+ LLFE+ +PSLL+TFV A Sbjct: 34 RSQSSFGFFEDV-ALDGED--QLSSFIQIDDWREI-NWKMAQPSSDDAAAGSTSSALPPSPRSASEQESVQFEYINELTVATRTFQSPNGQSVPYAVAIRAFRV--ISSGGGHAQYQVVVSTQTKVWKCWKRFSDFKLLAEYAKISDLTQTVQAWGEIQSTQRWFRCLEANYLRTKCYYLEKFIGCLLFELPSPSLLLTFVQA 230
BLAST of mRNA_L-elsbetiae_contig8464.17473.1 vs. uniprot
Match: A0A7S3XY65_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY65_HETAK) HSP 1 Score: 67.8 bits (164), Expect = 4.900e-10 Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 3 Query: 726 VYAEYQVLMSTKDETYKSWKRFSDFKLLAEYAKISD-----LRDTVTAWTDIQQTQRWFRCLEANYLKTKCRLLEKFLAQLLFEVHTPSLLMTFVG 998 V+AEY V++ W+R+++FK LAE D R+ + +W +++ +RW+RCL+ YL KC +L++FL L++E PS + F+G Sbjct: 11 VHAEYLVVLLVGAHRIGVWRRYTEFKGLAERLADRDEGKDQYRNALLSWESLRRKRRWYRCLDREYLALKCFMLQRFLQDLVYEAIHPSAIREFLG 106
BLAST of mRNA_L-elsbetiae_contig8464.17473.1 vs. uniprot
Match: A0A835YXN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN3_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.320e-10 Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 3 Query: 627 VTSTKTFRHGNQRPEPYAVCIGSTRVRRVSPFAVYAEYQVLMSTKDETYKSWKRFSDFKLLAEYAKISDLRDTVTAWTDIQQTQRWFRCLEANYLKTKCRLLEKFLAQLLFEVHTPSLLMTFVGA 1001 + STK F + +A IG R+ R S + +AE+QVL D ++ +W R+++F+ W D++ Q W+RCL YL+ KC LLE +L+Q+LF+ + L+ FV + Sbjct: 92 LVSTKCFGG-----KTFAWGIGGFRIVRGSAGSRHAEFQVLARYGDTSWAAWIRWTEFEQKLAEGPAKHWHRAACCWCDVKANQPWYRCLNTEYLRRKCLLLEGYLSQVLFDAPEVNQLLEFVAS 211
BLAST of mRNA_L-elsbetiae_contig8464.17473.1 vs. uniprot
Match: D7G182_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G182_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 1.810e-8 Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 3 Query: 726 VYAEYQVLMSTKDETYKSWKRFSDFKLLAEYAKISDLRD----TVTAWTDIQQTQRWFRCLEANYLKTKCRLLEKFLAQLLFEVHTPSLLMTFVG 998 V+AEY +++ T W+RFS+F+ LA S RD + +W +++ QRWFRCL+ +YL K LLE+FL +FE +P+ + F+G Sbjct: 270 VHAEYLIVVGLGTVTLGVWRRFSEFQRLASKLSRSRRRDQFHNALCSWRCLRERQRWFRCLDVDYLILKTFLLERFLHDFVFESMSPNTVREFLG 364
BLAST of mRNA_L-elsbetiae_contig8464.17473.1 vs. uniprot
Match: A0A8J2SNU0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNU0_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 3.560e-8 Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 3 Query: 729 YAEYQVLMSTKDETYKSWKRFSDFKLLAEYA----KISDLRDTVTAWTDIQQTQRWFRCLEANYLKTKCRLLEKFLAQLLFEVHTPSLLMTF 992 +AE+ V+ T+ W+R+S F+ L E + D +T +W +++ QRWFRCL+ +YL KC LLE+FL L+FE H S+ F Sbjct: 284 HAEFLVVARLGAVTFGLWRRYSHFEALNEKVTRNFRREDYSNTHWSWRCLRRRQRWFRCLDRDYLALKCFLLERFLHDLVFEAHNSSVFAEF 375
BLAST of mRNA_L-elsbetiae_contig8464.17473.1 vs. uniprot
Match: A0A835ZDH9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH9_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 3.670e-7 Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 3 Query: 726 VYAEYQVLMSTKDETYKSWKRFSDFKLLAEYAKISDLR----DTVTAWTDIQQTQRWFRCLEANYLKTKCRLLEKFLAQLLFEVHTPSLLMTFVG 998 V+AEY +++ T W+RF +FK LA + S+ R + + +W ++ QR FRCL+ +YL KC LLE+FL L+FE +P + F+G Sbjct: 300 VHAEYLIVVGLGAVTLGVWRRFREFKNLANKLEGSNKRQQFHNALCSWHCLRARQRLFRCLDKDYLILKCFLLERFLHDLVFESMSPDTVREFLG 394
BLAST of mRNA_L-elsbetiae_contig8464.17473.1 vs. uniprot
Match: F0XVE8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVE8_AURAN) HSP 1 Score: 64.3 bits (155), Expect = 5.070e-7 Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 3 Query: 729 YAEYQVLMSTKDETYKSWKRFSDFKLLAEYAKIS------DLRDTVTAWTDIQQTQRWFRCLEANYLKTKCRLLEKFLAQLLFEVHTPSLLMTFV 995 +AEY V+ T+ W+RF+ F L + KIS D ++T+ +W +++ QRWFRCL+ +YL KC LLE+FL +FE + +L F+ Sbjct: 306 HAEYLVVARLGAVTFGLWRRFAHFTALHD--KISKTLDKDDYQNTLWSWRCLRRRQRWFRCLDRDYLALKCFLLERFLHDAVFESASSTLFADFL 398 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8464.17473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8464.17473.1 >prot_L-elsbetiae_contig8464.17473.1 ID=prot_L-elsbetiae_contig8464.17473.1|Name=mRNA_L-elsbetiae_contig8464.17473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=214bp MVFSFLAPSPVPVFLGVSRCNSSFGWYDETSAFESVDVPHSSAFYQIEDWback to top mRNA from alignment at L-elsbetiae_contig8464:579..4919+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8464.17473.1 ID=mRNA_L-elsbetiae_contig8464.17473.1|Name=mRNA_L-elsbetiae_contig8464.17473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4341bp|location=Sequence derived from alignment at L-elsbetiae_contig8464:579..4919+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8464:579..4919+ >mRNA_L-elsbetiae_contig8464.17473.1 ID=mRNA_L-elsbetiae_contig8464.17473.1|Name=mRNA_L-elsbetiae_contig8464.17473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1284bp|location=Sequence derived from alignment at L-elsbetiae_contig8464:579..4919+ (Laminarionema elsbetiae ELsaHSoW15)back to top |