mRNA_L-elsbetiae_contig8461.17471.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8461.17471.1
Unique NamemRNA_L-elsbetiae_contig8461.17471.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8461.17471.1 vs. uniprot
Match: A0A6H5K6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E2_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 2.740e-40
Identity = 70/107 (65.42%), Postives = 86/107 (80.37%), Query Frame = 2 
Query:   17 TSTPDTVEMQVEDGLKSSFMDRVARKFPTRPLRGGSVAGGRKRSRPLSDILVEVDPRWDGEGRPPIIARGADADKTLAEWLDRRRP-EKRPAPLSIGAWLDRYSGGG 334
            T+TPDTVEM+VEDG   S ++  A+K P RPLRGGS++G RKRSRPLSD+LV +DP WDG G P ++ARGADAD+ LAEWLD  RP  +RP PLSI AWLD+++GGG
Sbjct:  682 TATPDTVEMEVEDGPALSALEAAAKKLPVRPLRGGSLSGSRKRSRPLSDVLVALDPEWDGSGPPRVVARGADADEMLAEWLDSSRPARRRPPPLSICAWLDKFAGGG 788
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8461.17471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6E2_9PHAE2.740e-4065.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8461contigL-elsbetiae_contig8461:3910..4261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size352
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816928.0633419-CDS-L-elsbetiae_contig8461:3909..42601622816928.0633419-CDS-L-elsbetiae_contig8461:3909..4260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8461 3910..4260 +
1691683919.005173-CDS-L-elsbetiae_contig8461:3909..42601691683919.005173-CDS-L-elsbetiae_contig8461:3909..4260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8461 3910..4260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8461.17471.1prot_L-elsbetiae_contig8461.17471.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8461 3910..4260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8461.17471.1

>prot_L-elsbetiae_contig8461.17471.1 ID=prot_L-elsbetiae_contig8461.17471.1|Name=mRNA_L-elsbetiae_contig8461.17471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
RSRVQHLNARHGRDAGRGRPEELVHGQSREEVPDATPAGRLRGGRAEAQP
PAVGHPRGGGPAVGRGGSAPDHRPRGRRGQDVGGVAGQKEAGEAACSAVN
RGLARQIFRRRGARRWR
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mRNA from alignment at L-elsbetiae_contig8461:3910..4261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8461.17471.1 ID=mRNA_L-elsbetiae_contig8461.17471.1|Name=mRNA_L-elsbetiae_contig8461.17471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=352bp|location=Sequence derived from alignment at L-elsbetiae_contig8461:3910..4261+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAGCCGAGTCCAGCACCTCAACGCCCGACACGGTCGAGATGCAGGTCG
AGGACGGCCTGAAGAGCTCGTTCATGGACAGAGTCGCGAGGAAGTTCCCG
ACGCGACCCCTGCGGGGCGGCTCCGTGGCGGGCGGGCGGAAGCGCAGCCG
CCCGCTGTCGGACATCCTCGTGGAGGTGGACCCGCGGTGGGACGGGGAGG
GTCGGCCCCCGATCATCGCCCGCGGGGCCGACGCGGACAAGACGTTGGCG
GAGTGGCTGGACAGAAGGAGGCCGGAGAAGCGGCCTGCTCCGCTGTCAAT
CGGGGCCTGGCTAGACAGATATTCCGGCGGCGGGGAGCACGACGGTGGAG
GC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8461:3910..4261+

>mRNA_L-elsbetiae_contig8461.17471.1 ID=mRNA_L-elsbetiae_contig8461.17471.1|Name=mRNA_L-elsbetiae_contig8461.17471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig8461:3910..4261+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAGCCGAGTCCAGCACCTCAACGCCCGACACGGTCGAGATGCAGGTCG
AGGACGGCCTGAAGAGCTCGTTCATGGACAGAGTCGCGAGGAAGTTCCCG
ACGCGACCCCTGCGGGGCGGCTCCGTGGCGGGCGGGCGGAAGCGCAGCCG
CCCGCTGTCGGACATCCTCGTGGAGGTGGACCCGCGGTGGGACGGGGAGG
GTCGGCCCCCGATCATCGCCCGCGGGGCCGACGCGGACAAGACGTTGGCG
GAGTGGCTGGACAGAAGGAGGCCGGAGAAGCGGCCTGCTCCGCTGTCAAT
CGGGGCCTGGCTAGACAGATATTCCGGCGGCGGGGAGCACGACGGTGGAG
GAGGAGCCGAGTCCAGCACCTCAACGCCCGACACGGTCGAGATGCAGGTC
GAGGACGGCCTGAAGAGCTCGTTCATGGACAGAGTCGCGAGGAAGTTCCC
GACGCGACCCCTGCGGGGCGGCTCCGTGGCGGGCGGGCGGAAGCGCAGCC
GCCCGCTGTCGGACATCCTCGTGGAGGTGGACCCGCGGTGGGACGGGGAG
GGTCGGCCCCCGATCATCGCCCGCGGGGCCGACGCGGACAAGACGTTGGC
GGAGTGGCTGGACAGAAGGAGGCCGGAGAAGCGGCCTGCTCCGCTGTCAA
TCGGGGCCTGGCTAGACAGATATTCCGGCGGCGGGGAGCACGACGGTGGA
GG
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