mRNA_L-elsbetiae_contig846.17468.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig846.17468.1
Unique NamemRNA_L-elsbetiae_contig846.17468.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig846.17468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig846contigL-elsbetiae_contig846:9944..13087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1161
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig846.17468.1prot_L-elsbetiae_contig846.17468.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig846 9987..12743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.6097317-UTR-L-elsbetiae_contig846:9943..99861622816927.6097317-UTR-L-elsbetiae_contig846:9943..9986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig846 9944..9986 +
1691683918.7075245-UTR-L-elsbetiae_contig846:9943..99861691683918.7075245-UTR-L-elsbetiae_contig846:9943..9986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig846 9944..9986 +
1622816927.6431422-UTR-L-elsbetiae_contig846:12743..130871622816927.6431422-UTR-L-elsbetiae_contig846:12743..13087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig846 12744..13087 +
1691683918.7416515-UTR-L-elsbetiae_contig846:12743..130871691683918.7416515-UTR-L-elsbetiae_contig846:12743..13087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig846 12744..13087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.6219673-CDS-L-elsbetiae_contig846:9986..102381622816927.6219673-CDS-L-elsbetiae_contig846:9986..10238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig846 9987..10238 +
1691683918.718007-CDS-L-elsbetiae_contig846:9986..102381691683918.718007-CDS-L-elsbetiae_contig846:9986..10238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig846 9987..10238 +
1622816927.6332293-CDS-L-elsbetiae_contig846:12221..127431622816927.6332293-CDS-L-elsbetiae_contig846:12221..12743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig846 12222..12743 +
1691683918.7317514-CDS-L-elsbetiae_contig846:12221..127431691683918.7317514-CDS-L-elsbetiae_contig846:12221..12743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig846 12222..12743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig846.17468.1

>prot_L-elsbetiae_contig846.17468.1 ID=prot_L-elsbetiae_contig846.17468.1|Name=mRNA_L-elsbetiae_contig846.17468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
MSATCVPQTFRNKPLLAPASQSSLTTVRTPDIQQMLPAQHALTAGYNTIN
TNANANSSSRRSGSHHNQATAESATNAGSNTTTWTNRDRRSSHQPRGRDP
QPMTNLLRPWSGGFPPSFPRRRQDTESNGSARQQQQQQGRRRGPAAEKEG
DGGYRRPAVLQLRKPRRFVVWTRRHQHKRGSSAAADRARRRGGERKTPPP
LLLYGQQHRQKKTAGFLVRLRRRQRWRLRRLLKSLLSSPAGSPACQQQPP
PPAGSPR*
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mRNA from alignment at L-elsbetiae_contig846:9944..13087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig846.17468.1 ID=mRNA_L-elsbetiae_contig846.17468.1|Name=mRNA_L-elsbetiae_contig846.17468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3144bp|location=Sequence derived from alignment at L-elsbetiae_contig846:9944..13087+ (Laminarionema elsbetiae ELsaHSoW15)
AATCTCTTCCTATTTTGTGTTCCTTTTTTTTTCTGGTCGACAGATGTCAG
CCACCTGCGTACCTCAAACTTTTCGGAACAAGCCCCTGCTCGCCCCTGCC
TCCCAGAGCTCACTTACTACTGTACGCACGCCAGATATCCAACAGATGCT
CCCAGCTCAGCACGCACTTACCGCCGGCTACAACACGATCAACACCAACG
CCAACGCCAACAGCAGCAGCAGAAGGAGCGGTTCGCACCACAACCAGGCG
ACAGCAGAGTCAGCCACCAACGCAGGCAGCAACACAACGACATGGGTGAG
AGAGAGAGAGAGAGAGAGACAGAGAGGGAAATTGAGGGTAGCTTGCCCTG
AACACTGTAGCGCAGGCATCTTATCCTCAGGGCATGCCTCCTCTCGCTTG
CGTCGAGCGAGCGAGCGAGCTGCAAACAATCGTTGGCGTTAAAAAGATGG
CGCATGTGGATATTGTGACTGGCCGAAAGGTACGGGGTGGCTTCCGAAAA
AAGACGACCCTGTGACTGCACCAAACACAAGACAGCAGTCAAAAGCAGCC
AATAAACTCCCCCCGCCCTCGCGACGGCGGCTTGATCGCAACACCCGGGA
TGCCTGACTTTCAGCCACGGTCAGGTATGCTATGGTTTATCTCGCGAGGT
TTCTGTGCCACCGTTGCGTGTGCATGAGCGGGCAGCAAGAAGATGACCAA
AAAAGATGCCCATGTTGTTTTTCGCCCTAGACTCGAAGAACACGCAGCAT
CAACCCCCAAAAGACCCATTAATTCGGAAGCCTTGCGTAGCGAGAACAGA
CCCCGTTCGTCGACCTGCAGAGGCGCAATCGTCGTTGCGTTGTTGTGACG
AGGGCCCTGATTTCGCGGGCGGAGCAAAATCGGGGTGATACCCTACAAAA
AAAGGGCCGACACAAAAGCCCGTGAGTTGAATGTCGAGGGTTGGCGTCAC
GTGCCTTACAGGATCACACCGACGATATGATCGTATCCCACGACGAAAGC
GAAACGGGATTTCACGCGCGCCAATATGCCCCGAGGTCAGCGCCTCCTTT
ATGATCGGCCTCGAGGTTGTACATAGGAGAAAAAGGTAGTCTTCCCCAGA
AACGACACAAAAAGGCGGGCCGTTTTATTATATGTTGATGTGTGTGTGTT
GTCTCATCGCTACCGTCCCAAGATACCAGAACCAGGGGTACAGATGGATG
TTGTGCAAAAAAAAAACAATGCCGATTTTTCTCGACGGCAGCACCTGGGC
TTTGCTGGGCCTGCGGCGTCCAGTCGTGGCATCGTTCGTTATCTCCTGCC
CCATGCGCTCCCTGTTCTGTAGAAACGACCAGCTGAAAAAACGGCTGGGT
GCCTTGTTGCTGTTTGTTCCACCCGCCACTTCTCTCTCCCTGTGCCTCGG
CTCTCTCTCATTTCGCGAAAAGACTTTGTGTGGGTGGATTTGACCAGGCG
CCTGTCCCTCCCCCCCTTCTCTATTACAGATAAGCATATACTACAGCCGT
ACATACACTTCTTCTCTTCCTCCTCTCTCTCGGTGTGGTGATCCTTTGGA
GCAGGCACAGCGCAGCAGCAGCGATACGCATATCTAGATAGAGTTGAAAC
GATACGCAACGATACATACGGCACAATTCGGCACCAACAAGCCGGCCACC
ACGAAAGTTACGAGATCCGTCGACCCGTCGTGTTGTGACCGTCATGGCAC
GTATAGGGGTACGTCAACGTTTGCCACACAGACTATAAAACGTAGGAGAG
GTAACAAACGCGAGAGTGTTTTTCCCCTTTCCTCCTTGCTCCTTTACCCC
CCACCCGCGTTTTCTACACCCTCGCCCAAACCCGTTTTTTTTTTTTCTTT
CTTCACATTTACTATAGTCTATAGAGTGCTCGATGCGCTCCTTGGCCACG
AGGGCATCTTGCCAGAAAGATGTTCCTTGCCCCGATGCCGGCCCCCAATC
CCCCCGTCTGCGGTGCTTGCCTAAGATTTTTGTCGCGAGAAGGGTTTCAC
CCGCCGGATCCCTTTTCCCTCGTCGACGGTTGAAGTCGAAGTACTCTGCA
AAAGCTCAACCAGTCCGTTCTTCTCGACAATTTTTTCCTTTTTCCTCCAG
TCCGTCCTGCTCTGCAAAAACAATTCCGGTTTCTCATGTTTCTCAATGCG
CGCTTCTGCCTGGTCATTCAACACGACCCCACCCCCCCCCCCCCCCTCTC
CCGATGCGCCCCCACCCCGCCGTTACTCGCTGTCTCACCCGCCCTTTTTG
CACAACAACAACGACGACGAAAAAGCAGACCAACCGGGATCGACGAAGCA
GCCATCAACCCAGGGGTCGGGACCCGCAACCGATGACAAATCTTTTGAGG
CCATGGTCGGGGGGATTTCCTCCCAGTTTCCCGCGCCGCCGGCAAGACAC
CGAAAGTAATGGCTCTGCCCGGCAGCAGCAGCAGCAGCAGGGGAGAAGGC
GGGGGCCAGCGGCGGAAAAGGAAGGCGACGGCGGCTATCGGCGGCCCGCC
GTCCTCCAACTCCGCAAGCCGCGCCGGTTCGTCGTCTGGACGCGTCGGCA
CCAACACAAGAGAGGAAGCAGTGCCGCCGCTGACCGCGCAAGACGACGGG
GTGGCGAGCGGAAGACGCCACCCCCGCTGCTGCTCTACGGGCAGCAGCAC
CGGCAAAAAAAGACGGCGGGTTTCCTGGTGCGGCTGCGGCGGCGGCAGCG
GTGGCGGCTGCGGCGGTTGCTGAAGAGCCTGCTGTCGTCGCCTGCCGGTT
CTCCGGCTTGCCAGCAACAGCCGCCGCCGCCCGCTGGTTCTCCTAGATGA
CGGCTTGCCGGCGGCGGTGGGCGATGGGCCGGCAGCGGGAAAAATGTTTT
TTTTAGTTAATAAATCGTCAGTCATCGTCGTCGCGTGTTGTGCCGTGTTG
TCCGGTGGTGCCGGCCGCTCGGCTCTCCCGAGGGTCACAGCTTTGTGCCA
ACAACTCACTTTCTCGGGGGTCCTCCTCGACTCGGCCGCAGCAGCATCAG
CAGCAGCATTGTGGCCAAGTTCCTAGGTGCAGCGGGATAGAGAGGAAGCA
CGACCGCACATGAAACCGTGCCACGAAGGGAAAGAAAGGGAGGGCTTGTA
GGGTGCTGTTTCTGTGTTAAGTGTTGGATGGATGAGAAGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig846:9944..13087+

>mRNA_L-elsbetiae_contig846.17468.1 ID=mRNA_L-elsbetiae_contig846.17468.1|Name=mRNA_L-elsbetiae_contig846.17468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig846:9944..13087+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGCCACCTGCGTACCTCAAACTTTTCGGAACAAGCCCCTGCTCGC
CCCTGCCTCCCAGAGCTCACTTACTACTGTACGCACGCCAGATATCCAAC
AGATGCTCCCAGCTCAGCACGCACTTACCGCCGGCTACAACACGATCAAC
ACCAACGCCAACGCCAACAGCAGCAGCAGAAGGAGCGGTTCGCACCACAA
CCAGGCGACAGCAGAGTCAGCCACCAACGCAGGCAGCAACACAACGACAT
GGATGTCAGCCACCTGCGTACCTCAAACTTTTCGGAACAAGCCCCTGCTC
GCCCCTGCCTCCCAGAGCTCACTTACTACTGTACGCACGCCAGATATCCA
ACAGATGCTCCCAGCTCAGCACGCACTTACCGCCGGCTACAACACGATCA
ACACCAACGCCAACGCCAACAGCAGCAGCAGAAGGAGCGGTTCGCACCAC
AACCAGGCGACAGCAGAGTCAGCCACCAACGCAGGCAGCAACACAACGAC
ATGGACCAACCGGGATCGACGAAGCAGCCATCAACCCAGGGGTCGGGACC
CGCAACCGATGACAAATCTTTTGAGGCCATGGTCGGGGGGATTTCCTCCC
AGTTTCCCGCGCCGCCGGCAAGACACCGAAAGTAATGGCTCTGCCCGGCA
GCAGCAGCAGCAGCAGGGGAGAAGGCGGGGGCCAGCGGCGGAAAAGGAAG
GCGACGGCGGCTATCGGCGGCCCGCCGTCCTCCAACTCCGCAAGCCGCGC
CGGTTCGTCGTCTGGACGCGTCGGCACCAACACAAGAGAGGAAGCAGTGC
CGCCGCTGACCGCGCAAGACGACGGGGTGGCGAGCGGAAGACGCCACCCC
CGCTGCTGCTCTACGGGCAGCAGCACCGGCAAAAAAAGACGGCGGGTTTC
CTGGTGCGGCTGCGGCGGCGGCAGCGGTGGCGGCTGCGGCGGTTGCTGAA
GAGCCTGCTGTCGTCGCCTGCCGGTTCTCCGGCTTGCCAGCAACAGCCGC
CGCCGCCCGCTGGTTCTCCTAGATGAACCAACCGGGATCGACGAAGCAGC
CATCAACCCAGGGGTCGGGACCCGCAACCGATGACAAATCTTTTGAGGCC
ATGGTCGGGGGGATTTCCTCCCAGTTTCCCGCGCCGCCGGCAAGACACCG
AAAGTAATGGCTCTGCCCGGCAGCAGCAGCAGCAGCAGGGGAGAAGGCGG
GGGCCAGCGGCGGAAAAGGAAGGCGACGGCGGCTATCGGCGGCCCGCCGT
CCTCCAACTCCGCAAGCCGCGCCGGTTCGTCGTCTGGACGCGTCGGCACC
AACACAAGAGAGGAAGCAGTGCCGCCGCTGACCGCGCAAGACGACGGGGT
GGCGAGCGGAAGACGCCACCCCCGCTGCTGCTCTACGGGCAGCAGCACCG
GCAAAAAAAGACGGCGGGTTTCCTGGTGCGGCTGCGGCGGCGGCAGCGGT
GGCGGCTGCGGCGGTTGCTGAAGAGCCTGCTGTCGTCGCCTGCCGGTTCT
CCGGCTTGCCAGCAACAGCCGCCGCCGCCCGCTGGTTCTCCTAGATGA
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