mRNA_L-elsbetiae_contig8457.17465.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8457.17465.1
Unique NamemRNA_L-elsbetiae_contig8457.17465.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: D7FHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB7_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.220e-34
Identity = 116/304 (38.16%), Postives = 150/304 (49.34%), Query Frame = 2 
Query:  368 AEGTAVPATLVFESSEAVSRFRNADAGSEVWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESEDGLCWWTPETRAPDL--------------------------------QKKPKAGKRKPSTNGERGEQGVEFRAAAVAAQACGARVLLGDRDLEDILRRQAEARSAD----EKLAEKP---------SHKRRRAGLDMEKLEGLIARRSALGQEVAVTREVMRRWSAAMKRL-RPREHAASVTERDEIMAKNLMKLEGGGNATTTVAVVGFGHLDGIETALEAEGW 1141
            A   AVPA   F S++ VS  RN D GSE+WLVG  H  +++VEL + V+ T +P+VVM+ELD+ R   LP GEA ++EDGL W+ PE +  D                                 + K   G  K   +    E+  E   A + AQACGARVLLGDRD E+  RR   A  AD    E+L +           S++++ AGLD+ K E               TRE      AAMKRL   R   A V ERDE+MA NLM ++G      TVA+VG  H+DGIE  L+  GW
Sbjct:   20 ARSEAVPA---FTSNDGVSYLRNPDTGSEIWLVGVVHGQETSVELSKSVVRTTRPQVVMLELDSKRLDDLPPGEAQKAEDGLTWFMPEKQPDDAVAQYVTLEGGGDDVELSRGDRWKGPFSFMSSSRAKSFVGAIKAMVDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKKFAGLDLRKPE---------------TRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTIKG---KPITVALVGLFHVDGIERILKRNGW 302
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BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: A0A6H5KLL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL9_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.080e-31
Identity = 114/300 (38.00%), Postives = 150/300 (50.00%), Query Frame = 2 
Query:  380 AVPATLVFESSEAVSRFRNADAGSEVWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESEDGLCWWTPETRAP----------------DLQKKPK----------------AGKRKPSTNGERGEQGVEFRAAAVAAQACGARVLLGDRDLEDILRRQAEARSAD----EKLAEKP---------SHKRRRAGLDMEKLEGLIARRSALGQEVAVTREVMRRWSAAMKRL-RPREHAASVTERDEIMAKNLMKLEGGGNATTTVAVVGFGHLDGIETALEAEGW 1141
            A+PA   F S++ VS  RN D GSE+WLVG  H  +++VEL + V+ T +P+VVM+ELD+ R   LP GEA ++EDGL W+ P+ +                  DL +  K                 G  K   +    E+  E   A + AQACGARVLLGDRD E+  RR   A  AD    E+L +           S+++  AGLD+ K +               TRE      AAMKRL   R   A V ERDE+MA+NLM L+G      TVA+VG  H+DGIE  L+  GW
Sbjct:  120 AIPA---FASNDGVSYLRNPDTGSEIWLVGVVHGQETSVELSKSVVRTTRPQVVMLELDSSRLDDLPPGEAQKAEDGLTWFMPQKQPDNAVAQGVTSRGGGDDVDLPRGEKWKGPFAFMSSSRVKSFVGAMKAIIDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKTFAGLDLRKPD---------------TREAAGEHYAAMKRLSNQRALEAMVPERDEVMARNLMTLKG---KPITVALVGLFHVDGIERILKRNGW 398
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BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: A0A6H5LN04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN04_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.580e-25
Identity = 83/187 (44.39%), Postives = 107/187 (57.22%), Query Frame = 2 
Query:  410 SEAVSRFRNADAGSEVWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESEDGLCWWTP---ETRAPDLQKKPKAGKRKPSTNGERG-----EQGV-EFRAAAVAAQACGARVLLGDRDLEDILRRQAEARSADEK-LAEKPSHKRR---RAGLDMEKLEGLIARRSALGQEV 931
            S+AVS  RN   GSE+WL+G  H+ +  V+LV+ VI  +KP+VVM+ELDA R  LLP G  ++ ED L WW P   + R P      K  K + +T  +R        GV E   A   AQAC ARVLLGDR  E   RR+ EA  AD + LAE    +R+   RAG +++KL  LI RR + G EV
Sbjct:   94 SDAVSHIRNPSTGSEIWLLGIIHQAEPYVQLVQSVIREIKPQVVMLELDAERTFLLPPGTPYQGEDKLWWWKPAKAKGRRPGAVSNRKKAKPRKTTRNQRNFYQDEHVGVSEIWTAGREAQACRARVLLGDRSNEVSKRREREAERADSQMLAEITGTERKELERAGKELQKLTALIERRRSFGFEV 280
[Close]
BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: D7FHB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHB5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 5.250e-23
Identity = 90/256 (35.16%), Postives = 119/256 (46.48%), Query Frame = 2 
Query:  407 SSEAVSRFRNADAGSEVWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESEDGLCWWTPETR---APDLQKKPKAGKRKPSTNGERGEQG------VEFRAAAVAAQACGARVLLGDRDLEDILRRQAEARSADEKLAEKPSHKRRRAGLDMEKLEGLIARRSALGQEVAVTREVMRRWSAAMKRLRPREHAASVTERD-EIMAKNLMKLEGGGNATTTVAVVGFGHLDGIETALEAEGWE 1144
            S++AVS + +    S +WLVG  H  KS V+LVE+ I  ++P VVMVELDA R  +LP GEA E+ +GL WW PE     + D+ +           +    ++       +E + A   A ACGARVLLGDRD E   R   +A+ AD       S K R+   D+                                           T  D E+MAKNLMKL G     TTVAV+G  HLDG+E  L+  GW+
Sbjct:  118 SNDAVSYWVHPAKESHIWLVGVVHGAKSGVQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEGSADVDEDGXXXXEYAEDDXXXXDEEESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRAD-----MASAKERKEFNDL------------------------------------------TTSFDCEVMAKNLMKLRG---EQTTVAVIGMAHLDGVEKVLKGHGWQ 323
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BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: A0A6H5K4M4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4M4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.760e-22
Identity = 100/282 (35.46%), Postives = 134/282 (47.52%), Query Frame = 2 
Query:  401 FESSEAVSRFRNADAGSEVWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESEDGLCWWTPETRAPDLQKK--------------PKA------------------GKRKPSTNGERGEQGVEFRAAAVAAQACGARVLLGDRDLEDILRRQAEA-RSAD-EKLAEKPSHKRRRAGLDMEKLEGLIARRSALGQEVAVTREVMRRWSAAMKRLRPREHAASVTERDEIMAKNLMKLEGGGNATTTVAVVGFGHLDGIETALEAEGWE 1144
            F   +AVS   N    SEVWLVG  H   S+  LVE+VI  +KP+VVMVELDA R     K  + + E  L   T +  AP  ++               PK                    K   S + +    G EF  A   A+ACGA++LLGDRD+   LRR +EA R  D +K+++    +    GL +E L+G          ++   RE MR+     K   P  + A + ERD++MA NLM L+G      TVAVVG  H+DGIE  L A GW+
Sbjct:  119 FLCDDAVSYLYNPTKQSEVWLVGTAHISNSSATLVENVIRQIKPQVVMVELDAQRVGSFMK-PSKQGEKTLADGTGKEIAPPAERTRNPFFGAFFKQLLDPKVPVNDRITDFFAAALGKAISKMYESMDQKGLSSGQEFTIAINEARACGAKLLLGDRDVRITLRRLSEALRKIDLQKISQSGQME---TGLGLEALDGSSVESINSSLDILKNRETMRKVIGFYKEEAPELYNAMIGERDKVMAVNLMGLDG---KQVTVAVVGLAHVDGIEGILMANGWK 393
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BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: A0A6H5KTH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.320e-16
Identity = 83/239 (34.73%), Postives = 114/239 (47.70%), Query Frame = 2 
Query:  542 MVELDAHRARLLPKGEAHESEDGLCWWTP------------------ETRAPDLQKKPKAG------------KRKPSTNGERGEQGVEFRAAAVAAQACGARVLLGDRDLEDILRRQAEARSADEK-----LAEKPSHKRRRAGLDMEKLEGLIARRSALGQEVAV---TREVMRRWSAAMKRLRPREHAASVTERDEIMAKNLMKLEGGGNATTTVAVVGFGHLDGIETALEAEGWE 1144
            MVE+D  R ++LP GEA +  DGL WW                    E +A +  + P  G            +R  +     G +  EF AAA  A ACGARVLLGDRD ++  RR ++A  AD++     L +  + K+         +E  I RR   G   A+    R++ + W       +PR+ A  VTERDE+MA NL+K+E G     TVAVVG  H  GI   L+A GW+
Sbjct:    1 MVEIDPCRIKMLPPGEATKDGDGLWWWDAVQEAGPATAVSSGDRDKDEVQAANTSRTPGDGLETATNAVARTRRRAKNDMNTDGMEMSEFYAAARQAVACGARVLLGDRDFQETTRRVSDADRADQEEAMSSLGDSSAGKKNT-------VEPRIKRRVLEGTSPALWRKLRDLEKTW-------KPRKFAVLVTERDEVMASNLLKVEEGQG---TVAVVGAHHTIGIGGILKANGWK 222
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BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: A0A2P6U1S8_CHLSO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1S8_CHLSO)

HSP 1 Score: 81.6 bits (200), Expect = 1.630e-12
Identity = 81/252 (32.14%), Postives = 113/252 (44.84%), Query Frame = 2 
Query:  431 RNADAGSEVWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESE-------------DGLCWWTPETRAPDLQKKPKAGKRKPSTNGERGEQGVEFRAAAVAAQACGARVLLGDRDLEDILRRQAEARSADEKLAEKPSHKRRRAGLDMEKLEGLIARRSALGQ------EVAVTREVMRRWSAAMKRLRPREHAASVTERDEIMAKNLMKLEGGGNATTTVAVVGFGHLDGIETALE 1129
            RN   G+E++LVG  H  K + + V D+I  VKP  VMVEL A RA  L  G  HE++                     +   P + K  K    +P         G EF+ A   A ACGARV+ GDRD++  L+R ++     + L           GL       + A RS+ G+      E    R ++R     M+ + P    A + ERD+IM ++L++LEG       V VVG  HLDGIE   E
Sbjct:  868 RNLSNGAEIFLVGTAHVSKQSAQEVRDMIRLVKPSSVMVELCAQRAARLRAGPEHEADYLQQMLKQIMFGGGTFSQKMVQVSLPMMYKMMKMMGMEP---------GGEFKVALEEADACGARVVYGDRDVQATLQRLSQNMDLQQLLQIATGR-----GLPEPPASLVEAFRSSGGEGLKGQVEGMKNRRLVRDMCEYMRTVNPGLAKALIDERDDIMTRSLLRLEG-----RVVGVVGLAHLDGIERRWE 1100
[Close]
BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: D7G9B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B8_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.190e-11
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  410 SEAVSRFRNADAGSEVWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESEDGLCWWTPETRAPD 646
            S+AVS  RN   GSE+WL+G  H+ +  V+LV+ VI  +KP+VVM+ELDA RA LLP G  ++  D     T   R+P+
Sbjct:   40 SDAVSHIRNPTTGSEIWLLGIIHQAEPYVQLVQSVIREIKPQVVMLELDAERAFLLPPGTPYQGGDLELSGTGTKRSPE 118
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BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: A0A061R3V5_9CHLO (Uncharacterized protein (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R3V5_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-10
Identity = 79/248 (31.85%), Postives = 113/248 (45.56%), Query Frame = 2 
Query:  422 SRFRNADAGSEVWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESEDGLCWWTPETRAPDLQKKPKAGKRKPSTNGERG---------EQGVEFRAAAVAAQACGARVLLGDRDLEDILRRQAEA---RSADEKLAEKPSHKRRRAGLDMEKLEGLIARRSALGQEVAVTREVMRRWSAAMKRLRPREHAASVTERDEIMAKNLMKLEGGGNATTTVAVVGFGHLDGIETALE 1129
            S  RN   G E+++VG  H  + + + V DVI  VKP VV +EL   RA +L +  A E    L     E     L        +  S  G+           + G EFR A   A   GAR++ GDR  ++ + R  ++    +  + ++ K S + +RA ++   L+  +       +  AV RE++RR   A     P    A + ERDEIMA+ L K  G       VAVVG GHLDGIE   E
Sbjct:   40 SYLRNLSNGGEIFIVGTSHVSECSADEVRDVIRRVKPDVVFLELCRERASILRRDSAAEHRSFL-----EDVVSALSGGGGLASKILSLTGKTYGRMFRAFGLDMGKEFRVAIAEADRIGARLVYGDRSQQETISRVCQSIDMGAISQMMSSKLSPEEQRATMEAASLKDAVEGM----KNRAVVREMVRRVEKAA----PGLAQALIHERDEIMARALAKETG-----RVVAVVGLGHLDGIERRWE 269
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BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Match: A0A2P6VJR0_9CHLO (Conjugal transfer n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VJR0_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 1.270e-8
Identity = 72/243 (29.63%), Postives = 112/243 (46.09%), Query Frame = 2 
Query:  431 RNADAGSEVWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESE--DGLCWWTPETRAPDLQKKPKAGK----RKPSTNGERGEQGVEFRAAAVAAQACGARVLLGDRDLEDILRRQAEARSADEKLAEKPSHKRRRAGLDMEK----LEGLIARRSALGQEVAV----TREVMRRWSAAMKRLRPREHAASVTERDEIMAKNLMKLEGGGNATTTVAVVGFGHLDGIE 1117
            RN   G+E++LVG  H  K + E V ++I  V+P  VM+EL + R   L  G   ++E    +            QK  +AG     R     G   + G EF+AA   A+  GAR++ GDRD++  L+R ++  +  + +       R   G  +      +    AR+S    E  V    TR ++R  +  ++++ PR     + ERD+ M   L +LEG       V VVG  HLDG+E
Sbjct:   80 RNLHNGAEIFLVGTAHVSKQSAEEVREMIRLVRPSTVMLELCSGRLARLRSGGTSDAELLKSMMGTFAAPGGTMSQKVVQAGLPLVYRAMKALGM--DPGAEFKAAVEEAERIGARIVCGDRDVQQTLQRLSQTVNFQDLM-------RMMTGRGLPDPPPGMAEFYARQSGSSIETKVEGMKTRAMVREMAEYLRQVNPRLAEVMIDERDQHMVDALARLEG-----RVVGVVGLAHLDGME 308
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8457.17465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FHB7_ECTSI3.220e-3438.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLL9_9PHAE1.080e-3138.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LN04_9PHAE4.580e-2544.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHB5_ECTSI5.250e-2335.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K4M4_9PHAE3.760e-2235.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KTH2_9PHAE1.320e-1634.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2P6U1S8_CHLSO1.630e-1232.14Cleavage and polyadenylation specificity factor su... [more]
D7G9B8_ECTSI4.190e-1146.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A061R3V5_9CHLO1.530e-1031.85Uncharacterized protein (Fragment) n=2 Tax=Tetrase... [more]
A0A2P6VJR0_9CHLO1.270e-829.63Conjugal transfer n=1 Tax=Micractinium conductrix ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8457contigL-elsbetiae_contig8457:933..5289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog2880.D7FHB1
KEGG rclassRC00034,RC00767,RC02141,RC02755
KEGG koko:K03781
KEGG ReactionR00009,R00602,R02670
KEGG Pathwayko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TraB family
EggNOG OGsCOG1916@1,KOG2860@2759
Ec32 ortholog descriptionPheromone shutdown, TraB
Ec32 orthologEc-03_004060.1
EC1.11.1.6
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_004400.1
Exons7
Model size1559
Cds size1167
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.485441-UTR-L-elsbetiae_contig8457:932..9361622816927.485441-UTR-L-elsbetiae_contig8457:932..936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8457 933..936 +
1691683918.6227415-UTR-L-elsbetiae_contig8457:932..9361691683918.6227415-UTR-L-elsbetiae_contig8457:932..936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8457 933..936 +
1622816927.5744188-UTR-L-elsbetiae_contig8457:4901..52891622816927.5744188-UTR-L-elsbetiae_contig8457:4901..5289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8457 4902..5289 +
1691683918.6924627-UTR-L-elsbetiae_contig8457:4901..52891691683918.6924627-UTR-L-elsbetiae_contig8457:4901..5289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8457 4902..5289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.4965374-CDS-L-elsbetiae_contig8457:936..12531622816927.4965374-CDS-L-elsbetiae_contig8457:936..1253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 937..1253 +
1691683918.6336548-CDS-L-elsbetiae_contig8457:936..12531691683918.6336548-CDS-L-elsbetiae_contig8457:936..1253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 937..1253 +
1622816927.5065484-CDS-L-elsbetiae_contig8457:1725..19031622816927.5065484-CDS-L-elsbetiae_contig8457:1725..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 1726..1903 +
1691683918.641733-CDS-L-elsbetiae_contig8457:1725..19031691683918.641733-CDS-L-elsbetiae_contig8457:1725..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 1726..1903 +
1622816927.517217-CDS-L-elsbetiae_contig8457:2186..22851622816927.517217-CDS-L-elsbetiae_contig8457:2186..2285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 2187..2285 +
1691683918.6502192-CDS-L-elsbetiae_contig8457:2186..22851691683918.6502192-CDS-L-elsbetiae_contig8457:2186..2285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 2187..2285 +
1622816927.5273101-CDS-L-elsbetiae_contig8457:2836..30251622816927.5273101-CDS-L-elsbetiae_contig8457:2836..3025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 2837..3025 +
1691683918.659053-CDS-L-elsbetiae_contig8457:2836..30251691683918.659053-CDS-L-elsbetiae_contig8457:2836..3025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 2837..3025 +
1622816927.5384386-CDS-L-elsbetiae_contig8457:3313..34541622816927.5384386-CDS-L-elsbetiae_contig8457:3313..3454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 3314..3454 +
1691683918.6676185-CDS-L-elsbetiae_contig8457:3313..34541691683918.6676185-CDS-L-elsbetiae_contig8457:3313..3454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 3314..3454 +
1622816927.5526395-CDS-L-elsbetiae_contig8457:3839..39351622816927.5526395-CDS-L-elsbetiae_contig8457:3839..3935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 3840..3935 +
1691683918.6759124-CDS-L-elsbetiae_contig8457:3839..39351691683918.6759124-CDS-L-elsbetiae_contig8457:3839..3935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 3840..3935 +
1622816927.5636997-CDS-L-elsbetiae_contig8457:4754..49011622816927.5636997-CDS-L-elsbetiae_contig8457:4754..4901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 4755..4901 +
1691683918.6842988-CDS-L-elsbetiae_contig8457:4754..49011691683918.6842988-CDS-L-elsbetiae_contig8457:4754..4901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8457 4755..4901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8457.17465.1prot_L-elsbetiae_contig8457.17465.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8457 937..4901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8457.17465.1

>prot_L-elsbetiae_contig8457.17465.1 ID=prot_L-elsbetiae_contig8457.17465.1|Name=mRNA_L-elsbetiae_contig8457.17465.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=389bp
MLATTFGPCPPGVAPFTSLRPFVPSTSPFSLLLGDMRHPGVMYLCFGLAC
RPAGSFFLCPGSEPHLPRAARLNGRRGCVRARPESGVGALEDVRRTRNRD
GTGTFWRRRSYLPAATAAAQSAEGTAVPATLVFESSEAVSRFRNADAGSE
VWLVGCYHRGKSTVELVEDVIATVKPRVVMVELDAHRARLLPKGEAHESE
DGLCWWTPETRAPDLQKKPKAGKRKPSTNGERGEQGVEFRAAAVAAQACG
ARVLLGDRDLEDILRRQAEARSADEKLAEKPSHKRRRAGLDMEKLEGLIA
RRSALGQEVAVTREVMRRWSAAMKRLRPREHAASVTERDEIMAKNLMKLE
GGGNATTTVAVVGFGHLDGIETALEAEGWEAVAELSVD*
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mRNA from alignment at L-elsbetiae_contig8457:933..5289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8457.17465.1 ID=mRNA_L-elsbetiae_contig8457.17465.1|Name=mRNA_L-elsbetiae_contig8457.17465.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4357bp|location=Sequence derived from alignment at L-elsbetiae_contig8457:933..5289+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTATGCTTGCAACGACTTTTGGTCCGTGCCCCCCCGGAGTTGCGCCTT
TCACTTCACTCCGTCCTTTTGTGCCATCCACTTCCCCCTTCTCTCTGCTG
CTGGGAGATATGAGGCATCCGGGTGTAATGTATCTCTGTTTTGGATTGGC
TTGCCGTCCCGCGGGCTCGTTCTTCCTGTGTCCGGGTAGCGAACCTCACT
TACCACGTGCGGCGAGACTCAACGGGCGACGTGGCTGCGTACGAGCCCGG
CCGGAAAGTGGTGTCGGTGCACTTGAGGACGTGCGCCGCACCAGGAATCG
GGATGGCACTGGAACGTTTTGGTGAGTGCGTTTCGATGGTGCCATAGACA
TTGTGGGTAATAGTACAAAGGTGTCGTGTGTGTTACGAAATATCTAATGT
CTAAGTATGTATGTATGAGCACGAGATCATGATCCAGGATCCAGGTATGT
AGCGGTACCTACAACCGGCCTTTCTTGATGGTGCAGACGTACAGACGGCG
CGTTGTGCATTCACCCACCTTGGTGCGTTGCACACAAACTTCAACCGCGC
TCTCCCTCTCCGAGAGCGGGACGCATCTACAAATGAAAAAGCGTGACTAC
GATCGCCTGATCTTCCGTCATTCGTTCACGGCCATGGGCTGCATGTTTGC
CGCCCGCCTGCCGAATGTTCCAAGCGTTTTTTTTTTTTTTTTGCGCTTTT
CGGCTATCCAGGCGATCGTTTACATCGTACGATCGGCCGTTTTTTTCCCA
TGCGCCTACTTTCGTTCCGCTCTCGGTGCCACCGCTGTTTCAGGCGTCGT
CGCTCGTACCTCCCAGCAGCGACGGCCGCCGCGCAGTCGGCGGAGGGGAC
AGCAGTCCCGGCGACTCTAGTGTTTGAGTCCAGCGAGGCTGTTTCGCGAT
TCCGGAACGCGGATGCGGGATCAGAAGTATGGCTGGTGGGGTGTTATCAT
CGCGGAAAATCGACCGTCGAGGTGAGGGGCCACCGGTACTGGTGGCACCG
CCGTTTTGTCCAGCAAGTGTGAGGCACATATGTATGTACATGAGTAAATG
CACCAGCATCGCCTCACGGGGAGAACGCAGTTGGCGGCCCAAATTGCGGT
ACGCATCCGCCGAATCTGCCTTGAGAGAGGAAACCTTGGCAGCACGCAAC
AAAGGTTAGAAGTGTGAGCACGCGCCTTGCTGATTTATATGTATGTATGC
GCTGTATGCGCGTCGGTCATGTTCGCCTCGCGCCACTCGGTCTCGTATTA
GCAGTTAGTGGAGGACGTTATCGCGACAGTCAAGCCTCGGGTGGTCATGG
TGGAACTGGACGCGCACCGGGCCAGGCTTTTGCCGAAAGGAGAGGCACAC
GAGGTGGGCGTCTCTTGGCACTGGAAAGTCGCCATATGTTCGTTCCTGTG
GCGTGGTTGGGCATGGGAGTCTGCGTCTGGGCTGCAGGCTAGAGAGTGTG
TTGTGCGTGTGTTGTCTTCACATTAATCGCCGTTCAAAAAAATATATATA
TATATCCAGTACATCTCCATGAGTCCGTACTAATCCAACATTGACGCGGT
CAATTCCCGTGGTCACAGGATAACTTACCCTAAAAGGGTATAGACTACTG
AAAAATGTTATACGGGCAATAAAAACCACGTGGAGTACACCCCTATGTTG
TTCGATCGTACATACATCTGTATCATGTTCAATCTCGCCATCGCGAACAC
CAAAACAGCCAGTTCCATTTCGTGGCTTTCTCAGGCCCATGTTCCGTTCG
TTGTCCCTGTTATGTAGCCTCGCTTCGGGCTGTTTTCTCTGTTCCTCTAG
ATAAAAACGCCCTGAAGACTGTACCCCAACAGCAGTGGTGGACGGGTTGC
CAACCCACGCTTGCCCATCTCACGCCCCCCCTCCCTGCTCCTGCGATACC
CCAGAGCGAGGACGGCTTGTGCTGGTGGACGCCGGAAACACGAGCACCGG
ACCTCCAAAAAAAGCCGAAAGCGGGGAAAAGAAAACCAAGCACGAACGGC
GAGAGAGGCGAACAGGGCGTGGAGTTTCGTGCGGCGGCCGTCGCGGCTCA
GGCGTGCGGCGCGAGAGTGCTCCTGGGCGACCGAGACCTCGAGGTGTGCG
TTTTGTTTTACCCTGTGCGTGGTACATCTACCGACCGCTTCACTGTCACT
GACCCGGCCGGGATTCCGGGGTTTGCGTACTCGGGGTTTACCGCTTGGTG
CCACCCTGCAGGTCCTCTTGTGAAGACGTTGGTCCCTCCGAACACTCTGG
GGCGAGGTCTCTCCTATACGTTGAGAAGCATGTCGCCATTGCCTGCATTG
GTACAAAGGCCCTGATTGCAGCATCTGACACCTTGCCCCCAACCGCAACC
GGTACCCTCGGACCTGTGTGATGATCCGCAGGATATCTTGCGCCGGCAGG
CTGAAGCCAGAAGCGCGGACGAGAAACTGGCAGAAAAACCCTCCCACAAG
CGGCGGAGAGCGGGGTTGGACATGGAGAAGCTGGAAGGGCTCATCGCACG
CAGAAGCGCCCTGGGCCAAGAGGTACGGCAGTAGTTACTCTGCCATTGCC
GACGTTGTTCTCGGCAAGAAATCGTGTTGTGGAGGCATGCAATGCAGGCG
GGAATATAGGTATCGAACATAAATGTTATGTGACCCCAGCCGACGCATGA
AACTGTCCCGGAAGGTGCATGTATCCGGCCCGTGAGATGAAGGGGGTGTG
CCGCGGACAGCATCACGCGTAACAACCCAAACATGCCGCCATTTTCACAA
GCAAAACCGCTCTTATTCGACGTAAATCGAGAGGTTTTGAAGCGTTCCCT
CCCGTCCTCCTCGCTGACCTGCGCAAAACCCCCTGCCTGCCTGCCTGCGT
GTGCGTGCATCCGCCGCCCCTCTGTGCCGCGTTTTTCTGTTCACCGGGGG
GGGGCAGGTGGCAGTTACGCGAGAGGTCATGCGGAGATGGAGCGCGGCGA
TGAAACGGCTGCGGCCGCGGGAGCACGCTGCAAGTGTTACCGAGCGAGAC
GAGGTAGGCAAGACAGGGTTAGCAAGCGAGCGGCGCGCGCGCGGCTTTCC
CCCCGCCCCGTGTTCTATCCCAATGCCGTTCGCGGCATACGCACTGAGGC
AACCCCTGCTCGTCTGACCCGGCTAGGCCATGCCTTGTCGTTTTTATTTT
CAAGAATGCCCATTTGAATAATCCCGTTTGGATTTGCTCCGGGGATATTG
TCCATCGGTGACCCGGCATATCTAAACCCATTTTAGCCGACGACGGTTCC
GTGTATACACAACAAACCAGATCGACAGACGGTGGTCTCTATATTGCTTG
CTGTGTTATATACTTCGAGGGGGTGTATCTTAGGTCGGCCACGTGTGGGA
GCCACGCGGCCTGCTCGATTGTTCGTTGTCGCTGAGATCTGGGTGATGGC
CCGGATTTGTTTTCGGTGACGCTTTTGTCGACGGCTACGGCCGACCAAGC
CGCGACCTGGATGTAGCTACTGCATGTTCGACACGGTTGATTTTCACTCC
ATCGACCACATTATCTTGGCCTTCAGTGCGCGTGAAGGAGCTGTTCGCGG
GGAAGCGTTTTTGCCCTCTCTGCAGCGCGTGTTGTTACGTCCGTGTGTGC
TGTTTGGCGTAGTATTTTGCAGTAAGTGAATGTTCGAGCGTGCGATTTAC
ATAGGTATGAACGACAACTTATCGTGTAAACGTGTCAATTCACCACCTCT
AGCATGCTGTGGCGTGTTCAGCCCTGAAGTTGCGCATAAATACGCAAGCC
CAACTACGATATCGCACGTCGTCAGCACTCTTGACCGTCACCCCCCATCT
CCTCTCGATCCCTCCCCCCCAGATAATGGCGAAAAACCTGATGAAGCTCG
AGGGCGGCGGCAACGCAACAACCACGGTAGCCGTAGTCGGCTTCGGACAC
CTCGACGGGATTGAAACTGCCTTGGAGGCTGAGGGCTGGGAGGCCGTGGC
GGAGCTGAGTGTTGATTGACTTCACCGAGTCTGGCTCCACGAAGGGGTTT
GGAAGAGCAGAGACTACCGGCGACGGTCTTGTCGGACTTTCGGCGAGTGA
ATTCGCGGGCTCTTGGCACACGATTTTACCTTCTTAAAAAGTCTGGCATA
GAAGAGGGTACGGCCCGTGAGAGCCGGAACGGAGGACGGTGTTGTGGTCG
GAACTTTTTGTGCGGCTTTTTTTGTCCTGGAGGTGTCGCGGCGTCTTCGC
CATCGTCTCTCCACACCTCGATGTCGCGGTGCGTTGGTGACAACATCTGG
CACATTTGACGTGTTGGGCTCTGCAGTGGGCGCTAAAATTGGCCTGGACA
CTAGCTGATGTTGAACATTTTCGTGAAAAATCTCCCCCCTAAAAAACGAA
ACGAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8457:933..5289+

>mRNA_L-elsbetiae_contig8457.17465.1 ID=mRNA_L-elsbetiae_contig8457.17465.1|Name=mRNA_L-elsbetiae_contig8457.17465.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2334bp|location=Sequence derived from alignment at L-elsbetiae_contig8457:933..5289+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGCAACGACTTTTGGTCCGTGCCCCCCCGGAGTTGCGCCTTTCAC
TTCACTCCGTCCTTTTGTGCCATCCACTTCCCCCTTCTCTCTGCTGCTGG
GAGATATGAGGCATCCGGGTGTAATGTATCTCTGTTTTGGATTGGCTTGC
CGTCCCGCGGGCTCGTTCTTCCTGTGTCCGGGTAGCGAACCTCACTTACC
ACGTGCGGCGAGACTCAACGGGCGACGTGGCTGCGTACGAGCCCGGCCGG
AAAGTGGTGTCGGTGCACTTGAGGACGTGCGCCGCACCAGGAATCGGGAT
GGCACTGGAACGTTTTGATGCTTGCAACGACTTTTGGTCCGTGCCCCCCC
GGAGTTGCGCCTTTCACTTCACTCCGTCCTTTTGTGCCATCCACTTCCCC
CTTCTCTCTGCTGCTGGGAGATATGAGGCATCCGGGTGTAATGTATCTCT
GTTTTGGATTGGCTTGCCGTCCCGCGGGCTCGTTCTTCCTGTGTCCGGGT
AGCGAACCTCACTTACCACGTGCGGCGAGACTCAACGGGCGACGTGGCTG
CGTACGAGCCCGGCCGGAAAGTGGTGTCGGTGCACTTGAGGACGTGCGCC
GCACCAGGAATCGGGATGGCACTGGAACGTTTTGGCGTCGTCGCTCGTAC
CTCCCAGCAGCGACGGCCGCCGCGCAGTCGGCGGAGGGGACAGCAGTCCC
GGCGACTCTAGTGTTTGAGTCCAGCGAGGCTGTTTCGCGATTCCGGAACG
CGGATGCGGGATCAGAAGTATGGCTGGTGGGGTGTTATCATCGCGGAAAA
TCGACCGTCGAGGCGTCGTCGCTCGTACCTCCCAGCAGCGACGGCCGCCG
CGCAGTCGGCGGAGGGGACAGCAGTCCCGGCGACTCTAGTGTTTGAGTCC
AGCGAGGCTGTTTCGCGATTCCGGAACGCGGATGCGGGATCAGAAGTATG
GCTGGTGGGGTGTTATCATCGCGGAAAATCGACCGTCGAGTTAGTGGAGG
ACGTTATCGCGACAGTCAAGCCTCGGGTGGTCATGGTGGAACTGGACGCG
CACCGGGCCAGGCTTTTGCCGAAAGGAGAGGCACACGAGTTAGTGGAGGA
CGTTATCGCGACAGTCAAGCCTCGGGTGGTCATGGTGGAACTGGACGCGC
ACCGGGCCAGGCTTTTGCCGAAAGGAGAGGCACACGAGAGCGAGGACGGC
TTGTGCTGGTGGACGCCGGAAACACGAGCACCGGACCTCCAAAAAAAGCC
GAAAGCGGGGAAAAGAAAACCAAGCACGAACGGCGAGAGAGGCGAACAGG
GCGTGGAGTTTCGTGCGGCGGCCGTCGCGGCTCAGGCGTGCGGCGCGAGA
GTGCTCCTGGGCGACCGAGACCTCGAGAGCGAGGACGGCTTGTGCTGGTG
GACGCCGGAAACACGAGCACCGGACCTCCAAAAAAAGCCGAAAGCGGGGA
AAAGAAAACCAAGCACGAACGGCGAGAGAGGCGAACAGGGCGTGGAGTTT
CGTGCGGCGGCCGTCGCGGCTCAGGCGTGCGGCGCGAGAGTGCTCCTGGG
CGACCGAGACCTCGAGGATATCTTGCGCCGGCAGGCTGAAGCCAGAAGCG
CGGACGAGAAACTGGCAGAAAAACCCTCCCACAAGCGGCGGAGAGCGGGG
TTGGACATGGAGAAGCTGGAAGGGCTCATCGCACGCAGAAGCGCCCTGGG
CCAAGAGGATATCTTGCGCCGGCAGGCTGAAGCCAGAAGCGCGGACGAGA
AACTGGCAGAAAAACCCTCCCACAAGCGGCGGAGAGCGGGGTTGGACATG
GAGAAGCTGGAAGGGCTCATCGCACGCAGAAGCGCCCTGGGCCAAGAGGT
GGCAGTTACGCGAGAGGTCATGCGGAGATGGAGCGCGGCGATGAAACGGC
TGCGGCCGCGGGAGCACGCTGCAAGTGTTACCGAGCGAGACGAGGTGGCA
GTTACGCGAGAGGTCATGCGGAGATGGAGCGCGGCGATGAAACGGCTGCG
GCCGCGGGAGCACGCTGCAAGTGTTACCGAGCGAGACGAGATAATGGCGA
AAAACCTGATGAAGCTCGAGGGCGGCGGCAACGCAACAACCACGGTAGCC
GTAGTCGGCTTCGGACACCTCGACGGGATTGAAACTGCCTTGGAGGCTGA
GGGCTGGGAGGCCGTGGCGGAGCTGAGTGTTGATTGAATAATGGCGAAAA
ACCTGATGAAGCTCGAGGGCGGCGGCAACGCAACAACCACGGTAGCCGTA
GTCGGCTTCGGACACCTCGACGGGATTGAAACTGCCTTGGAGGCTGAGGG
CTGGGAGGCCGTGGCGGAGCTGAGTGTTGATTGA
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