mRNA_L-elsbetiae_contig8455.17464.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8455.17464.1
Unique NamemRNA_L-elsbetiae_contig8455.17464.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8455.17464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8455contigL-elsbetiae_contig8455:6191..6936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size746
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8455.17464.1prot_L-elsbetiae_contig8455.17464.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8455 6417..6872 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.4315338-UTR-L-elsbetiae_contig8455:6190..64161622816927.4315338-UTR-L-elsbetiae_contig8455:6190..6416Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8455 6191..6416 +
1691683918.590599-UTR-L-elsbetiae_contig8455:6190..64161691683918.590599-UTR-L-elsbetiae_contig8455:6190..6416Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8455 6191..6416 +
1622816927.4538796-UTR-L-elsbetiae_contig8455:6872..69361622816927.4538796-UTR-L-elsbetiae_contig8455:6872..6936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8455 6873..6936 +
1691683918.6133811-UTR-L-elsbetiae_contig8455:6872..69361691683918.6133811-UTR-L-elsbetiae_contig8455:6872..6936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8455 6873..6936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.4424028-CDS-L-elsbetiae_contig8455:6416..68721622816927.4424028-CDS-L-elsbetiae_contig8455:6416..6872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8455 6417..6872 +
1691683918.6044006-CDS-L-elsbetiae_contig8455:6416..68721691683918.6044006-CDS-L-elsbetiae_contig8455:6416..6872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8455 6417..6872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8455.17464.1

>prot_L-elsbetiae_contig8455.17464.1 ID=prot_L-elsbetiae_contig8455.17464.1|Name=mRNA_L-elsbetiae_contig8455.17464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MYISAFLAVVTTIIPLCVCCHCSTSTPLDLSSTRYAGRPVPRRVAASPTP
IVGSYVRYRLRSTRGSLGRVATTLRYRLCNYRAALLQFGHFKSWLMLLGP
SGALGGGGGSGEPPRPTAGNHWGLNNCICRGWAAGRPITFGFRYNPRLGS
I*
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mRNA from alignment at L-elsbetiae_contig8455:6191..6936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8455.17464.1 ID=mRNA_L-elsbetiae_contig8455.17464.1|Name=mRNA_L-elsbetiae_contig8455.17464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=746bp|location=Sequence derived from alignment at L-elsbetiae_contig8455:6191..6936+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGAGAGCGTGAGTATTTTCAGAGAGCTGCAACGTGCCTAGGAAGGC
TTCACGGTAATGTGAGGCACTTGCTCGGGGTCGTATGGGAGGGTATTTTG
CGGGTATTTGTACCATCTTGGGCGGCAGCGTTGCTCTAAAACGCTGGAAA
TGATACATGAAAACTTTTCATAAACAGCAGTACACGTCGGAAGCACCTGG
CTAATCATGAAGGACGCGAGCGCCAGATGTACATCTCGGCTTTTCTCGCC
GTTGTTACAACAATAATCCCGTTGTGTGTTTGCTGTCACTGCTCAACAAG
TACACCACTGGATTTGTCTAGCACACGGTATGCTGGTCGTCCCGTGCCTC
GGAGGGTAGCTGCCTCGCCTACGCCTATTGTGGGTAGCTACGTAAGATAT
AGGCTACGTTCAACGCGGGGTTCGTTGGGTAGGGTAGCTACTACCCTAAG
ATATAGACTATGCAACTACCGTGCCGCTCTCTTGCAATTCGGTCATTTCA
AAAGCTGGCTTATGCTTCTGGGACCGTCTGGGGCGCTGGGAGGTGGAGGT
GGCAGCGGAGAACCACCACGACCTACGGCTGGTAACCATTGGGGCCTGAA
TAATTGTATTTGTCGAGGGTGGGCGGCGGGCCGCCCCATCACATTTGGGT
TCAGGTATAACCCTCGTCTAGGATCCATATGATAAGCTCACCTAATGTCA
GACCGCGGTGGAAACTTCTCCCACAACAACATTATTGTAATCTATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8455:6191..6936+

>mRNA_L-elsbetiae_contig8455.17464.1 ID=mRNA_L-elsbetiae_contig8455.17464.1|Name=mRNA_L-elsbetiae_contig8455.17464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig8455:6191..6936+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACATCTCGGCTTTTCTCGCCGTTGTTACAACAATAATCCCGTTGTG
TGTTTGCTGTCACTGCTCAACAAGTACACCACTGGATTTGTCTAGCACAC
GGTATGCTGGTCGTCCCGTGCCTCGGAGGGTAGCTGCCTCGCCTACGCCT
ATTGTGGGTAGCTACGTAAGATATAGGCTACGTTCAACGCGGGGTTCGTT
GGGTAGGGTAGCTACTACCCTAAGATATAGACTATGCAACTACCGTGCCG
CTCTCTTGCAATTCGGTCATTTCAAAAGCTGGCTTATGCTTCTGGGACCG
TCTGGGGCGCTGGGAGGTGGAGGTGGCAGCGGAGAACCACCACGACCTAC
GGCTGGTAACCATTGGGGCCTGAATAATTGTATTTGTCGAGGGTGGGCGG
CGGGCCGCCCCATCACATTTGGGTTCAGGTATAACCCTCGTCTAGGATCC
ATATGAATGTACATCTCGGCTTTTCTCGCCGTTGTTACAACAATAATCCC
GTTGTGTGTTTGCTGTCACTGCTCAACAAGTACACCACTGGATTTGTCTA
GCACACGGTATGCTGGTCGTCCCGTGCCTCGGAGGGTAGCTGCCTCGCCT
ACGCCTATTGTGGGTAGCTACGTAAGATATAGGCTACGTTCAACGCGGGG
TTCGTTGGGTAGGGTAGCTACTACCCTAAGATATAGACTATGCAACTACC
GTGCCGCTCTCTTGCAATTCGGTCATTTCAAAAGCTGGCTTATGCTTCTG
GGACCGTCTGGGGCGCTGGGAGGTGGAGGTGGCAGCGGAGAACCACCACG
ACCTACGGCTGGTAACCATTGGGGCCTGAATAATTGTATTTGTCGAGGGT
GGGCGGCGGGCCGCCCCATCACATTTGGGTTCAGGTATAACCCTCGTCTA
GGATCCATATGA
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