mRNA_L-elsbetiae_contig8455.17463.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8455.17463.1
Unique NamemRNA_L-elsbetiae_contig8455.17463.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8455.17463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8455contigL-elsbetiae_contig8455:5004..5605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size602
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8455.17463.1prot_L-elsbetiae_contig8455.17463.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8455 5058..5507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.3767781-UTR-L-elsbetiae_contig8455:5003..50571622816927.3767781-UTR-L-elsbetiae_contig8455:5003..5057Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8455 5004..5057 +
1691683918.5656276-UTR-L-elsbetiae_contig8455:5003..50571691683918.5656276-UTR-L-elsbetiae_contig8455:5003..5057Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8455 5004..5057 +
1622816927.4006894-UTR-L-elsbetiae_contig8455:5507..56051622816927.4006894-UTR-L-elsbetiae_contig8455:5507..5605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8455 5508..5605 +
1691683918.5818715-UTR-L-elsbetiae_contig8455:5507..56051691683918.5818715-UTR-L-elsbetiae_contig8455:5507..5605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8455 5508..5605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.390474-CDS-L-elsbetiae_contig8455:5057..55071622816927.390474-CDS-L-elsbetiae_contig8455:5057..5507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8455 5058..5507 +
1691683918.5739996-CDS-L-elsbetiae_contig8455:5057..55071691683918.5739996-CDS-L-elsbetiae_contig8455:5057..5507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8455 5058..5507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8455.17463.1

>prot_L-elsbetiae_contig8455.17463.1 ID=prot_L-elsbetiae_contig8455.17463.1|Name=mRNA_L-elsbetiae_contig8455.17463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
MLAIVEKIVSTNDFLVVPVHTDNCLQKEKCPMLLCAEITSSFRGRGHDQK
PLTRLCAPTGGRVRVWFASIWTILCRSGGSKRWKWRMDAFPEQQHRPEAL
VDSKSSPTLSTLILPGQHVLQGRAKGVFAPKAGQSAKKTGKSCILHMCI*
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mRNA from alignment at L-elsbetiae_contig8455:5004..5605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8455.17463.1 ID=mRNA_L-elsbetiae_contig8455.17463.1|Name=mRNA_L-elsbetiae_contig8455.17463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=602bp|location=Sequence derived from alignment at L-elsbetiae_contig8455:5004..5605+ (Laminarionema elsbetiae ELsaHSoW15)
CACTTTTTCCAGAACACGGTCGGCGGGGTGGTCCTGACGCCCGTGAACCA
GGCTATGCTCGCGATCGTTGAAAAAATTGTGTCGACAAATGATTTTCTCG
TGGTCCCTGTGCACACAGACAACTGCCTACAAAAAGAGAAGTGCCCTATG
CTTCTCTGTGCAGAGATCACGAGTTCTTTTAGAGGGCGCGGGCATGACCA
AAAACCGCTTACCCGACTTTGCGCACCTACCGGGGGTAGGGTTCGAGTGT
GGTTTGCGAGTATTTGGACGATTTTGTGTCGTAGTGGTGGTTCAAAACGC
TGGAAATGGCGCATGGATGCGTTTCCTGAACAACAGCACAGGCCGGAAGC
ACTTGTAGACTCAAAAAGCTCGCCAACGCTTTCAACGTTAATCTTGCCGG
GGCAACACGTGCTGCAAGGCCGTGCAAAGGGTGTTTTTGCACCCAAAGCA
GGACAAAGCGCGAAAAAAACGGGAAAGTCGTGCATCCTACATATGTGCAT
ATAAAGCTCACTGACTAACAGAGCAGTGCGTGGGAGTGTGGTTTCATTGC
GATCGCTCCAAACCCCCGATTTTCGTATTGTAGCCCCGGCCTCGGAAATG
CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8455:5004..5605+

>mRNA_L-elsbetiae_contig8455.17463.1 ID=mRNA_L-elsbetiae_contig8455.17463.1|Name=mRNA_L-elsbetiae_contig8455.17463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig8455:5004..5605+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGCGATCGTTGAAAAAATTGTGTCGACAAATGATTTTCTCGTGGT
CCCTGTGCACACAGACAACTGCCTACAAAAAGAGAAGTGCCCTATGCTTC
TCTGTGCAGAGATCACGAGTTCTTTTAGAGGGCGCGGGCATGACCAAAAA
CCGCTTACCCGACTTTGCGCACCTACCGGGGGTAGGGTTCGAGTGTGGTT
TGCGAGTATTTGGACGATTTTGTGTCGTAGTGGTGGTTCAAAACGCTGGA
AATGGCGCATGGATGCGTTTCCTGAACAACAGCACAGGCCGGAAGCACTT
GTAGACTCAAAAAGCTCGCCAACGCTTTCAACGTTAATCTTGCCGGGGCA
ACACGTGCTGCAAGGCCGTGCAAAGGGTGTTTTTGCACCCAAAGCAGGAC
AAAGCGCGAAAAAAACGGGAAAGTCGTGCATCCTACATATGTGCATATAA
ATGCTCGCGATCGTTGAAAAAATTGTGTCGACAAATGATTTTCTCGTGGT
CCCTGTGCACACAGACAACTGCCTACAAAAAGAGAAGTGCCCTATGCTTC
TCTGTGCAGAGATCACGAGTTCTTTTAGAGGGCGCGGGCATGACCAAAAA
CCGCTTACCCGACTTTGCGCACCTACCGGGGGTAGGGTTCGAGTGTGGTT
TGCGAGTATTTGGACGATTTTGTGTCGTAGTGGTGGTTCAAAACGCTGGA
AATGGCGCATGGATGCGTTTCCTGAACAACAGCACAGGCCGGAAGCACTT
GTAGACTCAAAAAGCTCGCCAACGCTTTCAACGTTAATCTTGCCGGGGCA
ACACGTGCTGCAAGGCCGTGCAAAGGGTGTTTTTGCACCCAAAGCAGGAC
AAAGCGCGAAAAAAACGGGAAAGTCGTGCATCCTACATATGTGCATATAA
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